Changes between Version 1 and Version 2 of Grant/Core4


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Timestamp:
Mar 31, 2011, 8:32:59 PM (15 years ago)
Author:
Scooter Morris
Comment:

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  • Grant/Core4

    v1 v2  
    22== Specific Aims ==
    33 * Specific Aim 1: Develop and deploy extensions to Cytoscape and Chimera that will support the integration of macromolecular structural visualization and analysis with network visualization and analysis.
     4  * Aim 1A: Enhance and extend structureViz to support a broader range of use cases, including more complicated relationships between network objects (nodes and edges), their attributes, and structures or parts of structures displayed in Chimera.
     5  * Aim 1B: Develop and deploy a plugin and any required Cytoscape core modifications to support the Chimera extension described in Core 1 to "zoom out" from the structural context to the broader network context.
    46 * Specific Aim 2: Develop and deploy tools to support the analysis of high-throughput data (genetic, mRNA expression, RNA-Seq, ChIP-Seq, Hi-C) in the context of biological pathways, protein-protein interaction networks, or other biological network representation.
    57  * Aim 2A: Extend existing clustering tools to support fuzzy clustering