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"Chimera Outreach and Training" subproject for CGL annual report
reporting period is approximately June through May
don't include papers... they will go in the Chimera Software Dev project
2009/2010 report
May 21, 2009
Talk to ten San Francisco high school teachers, part of the Current Science Seminar Series organized by the UCSF Science and Health Education Partnership. (http://biochemistry.ucsf.edu/programs/sep/) Showed stereo visualization and manipulation of man-made molecular machines and viruses. Made paper virus models.
- Tom Goddard
June 11, 2009
Second talk to high school teachers in the Current Science Seminar Series given by the UCSF Science and Health Education Partnership. Showed stereo visualization and manipulation of man-made molecular machines and viruses. Made paper virus models.
- Tom Goddard
June 24, 2009
Virus visualization demonstration for a dozen science summer school students ages 9 to 12 (http://www.celsiusandbeyond.com/). Showed stereo visualization, space navigator, phantom force feedback, protein and rna structure and virus paper models.
- Tom Goddard
July 14, 2009
Molecular visualization demonstration for ~30 kids from the COSMOS summer school program at U.C. Davis (http://www.ucop.edu/cosmos/). Showed stereo visualization, virus structures, protein, dna, and protein docked with dna.
- Scooter Morris
July 15, 2009
Virus visualization demonstration for 5 science summer school students ages 9 to 12 (http://www.celsiusandbeyond.com/). Showed stereo visualization, space navigator, phantom force feedback, protein and rna structure and virus paper models.
- Tom Goddard
August 19, 2009
Chimera talk and demonstration, Molecular Visualization symposium (COMP division, see http://oasys2.confex.com/acs/238nm/techprogram/S32080.HTM ) at the 238th American Chemical Society National Meeting (Washington, DC).
- Tom Ferrin, Elaine Meng
September 1, 2009
Demonstration for NIH visitors from Clinical and Translation Science Awards (CTSA). Showed HIV spike tomography, T-cell tomography, clathrin cage animation, cytoscape.
- Tom Goddard, Scooter Morris, Tom Ferrin
September 22, 2009
Gave a talk and training session at the EMBO European School of Genetic Medicine course entitled "Embo Practical course on Networks in Biology analysis, modeling and reverse engineering." My talk was an introduction to the "Analysis & Visualisation of biological networks" and the practical covered uses of Cytoscape. There were 60 students from throughout Europe, and 6 faculty in attendance. Prep time for talk: 16 hours, for lab: 8 hours.
- Scooter Morris
September 28, 2009
Gave an informal seminar at Institute Pasteur for 10 members of the Systems Biology Group on uses of Cytoscape for phylogenetic analysis and cheminformatics.
- Scooter Morris
September 30, 2009
45-minute Chimera demonstration to ~20 students in UCSF BP204A, "Macromolecular Interactions" class. Included basic usage, morphing, viewing sequences, showing attribute values, building multimers.
- Elaine Meng, Eric Pettersen
October 23, 2009
Gave a 3 hour training session to the UCSF BMI206 class (14 Graduate Students) on Cytoscape and structureViz. Prep time: 12 hours. Tutorials are available on-line at http://opentutorials.rbvi.ucsf.edu/
- Scooter Morris
