| | 53 | October 15, 2014 |
| | 54 | |
| | 55 | UCSF BP204,"Macromolecular Interactions" class: 45-minute presentation followed by 45 mins of the students (about 19 of them) doing a Chimera tutorial on their own laptops. The presentation included 5 mins on history of Computer Graphics Lab, 40 mins of Chimera demonstration: basic usage, finding H-bonds, morphing, viewing sequences, showing attribute values, building multimers, measuring buried surface area, stereo. Prep time 12 hours including updating and rehearsing the presentation, updating and preparing handouts. |
| | 56 | |
| | 57 | * Elaine Meng, Eric Pettersen |
| | 58 | |
| | 59 | October 21, 2014 |
| | 60 | |
| | 61 | UCSF BP205A,"Physical Underpinnings of Biological Systems" class: 1-hr presentation to 25 students focusing on showing sequence conservation on structures using Chimera. Covers obtaining a sequence alignment if you don't already have one, using methods available within Chimera to calculate per-column conservation and show it on structures with colors and/or worms, or creating an attribute file or alignment header file to import values that have been calculated outside of Chimera. Prep time 40 hours creating and rehearsing presentation, making [http://www.rbvi.ucsf.edu/chimera/data/tutorials/systems/outline.html web page] with images and sample data. |
| | 62 | |
| | 63 | * Elaine Meng, Eric Pettersen |
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