Changes between Version 1 and Version 2 of BfactorClip

Timestamp:

Sep 9, 2020, 5:31:15 PM (6 years ago)

Author:

meng

Comment:

--

BfactorClip

@@ -7 +7 @@
 for the atoms so that they can protrude from the sliced surface.
 The atoms of the protein are then colored by B-factor with
-[http://rbvi.ucsf.edu/chimerax/docs/user/commands/color.html#byattribute
-color byattribute]. This automatically colors their patches on the outer
+[http://rbvi.ucsf.edu/chimerax/docs/user/commands/color.html#byattribute color byattribute].
+This automatically colors their patches on the outer
 surface of the protein, but not the sliced surface.
 The atoms themselves are also colored even though they are not displayed,
 and their coloring is then used by
-[http://rbvi.ucsf.edu/chimerax/docs/user/commands/color.html#zone
-color zone] to color patches in the sliced surface face by the nearest atom.
+[http://rbvi.ucsf.edu/chimerax/docs/user/commands/color.html#zone color zone]
+to color the surface cap model by nearest atom.
 
 {{{
-        open 2gbp
+open 2gbp
 surface
 turn y 70
@@ -32 +32 @@
 }}}
 
-The [http://rbvi.ucsf.edu/chimerax/docs/user/commands/wait.html
-wait 1] is needed only in the context of a command file,
+The [http://rbvi.ucsf.edu/chimerax/docs/user/commands/wait.html wait 1]
+is needed only in the context of a command file,
 to force drawing the graphics to create the surface cap before it is colored.
 
 The 'update' option of
-[http://rbvi.ucsf.edu/chimerax/docs/user/commands/color.html#zone
-color zone] allows subsequently adjusting the clipping plane position
+[http://rbvi.ucsf.edu/chimerax/docs/user/commands/color.html#zone color zone]
+allows subsequently adjusting the clipping plane position
 without having to redo the coloring.
 
@@ -44 +44 @@
 
 Elaine Meng, September 9, 2020
-}
-}