= Phenix = === Fit Loops Improvements === * Use JSON output * Reworked command to use atom spec instead of chain ID and start/end residue numbers - Warn if spec selects nothing * Reported (additional) fit-loops bugs: - JSON option not working - JSON output includes null results - Chain ID w/o start/end res numbers does whole structure - Python IndexError into solution list - Phenix's Python 3.10 build basically doesn't work - Same problem as ChimeraX had: automatic type conversion to C/C++ disabled * Preliminary results-viewer tool = ChimeraX completed = * Region Browser * Combine sessions * Actions→View → Actions→Focus * Fixed bug with proportional spacing of vertical colors in Color Key * Automatically open ViewDockX tool for appropriate formats (`showTool` keyword) * Fixed problem where Help Viewer was starting with zero height