= Phenix = * Made a release on the Toolshed === Fit Loops === * Undo (but not redo) === Local EM Fitting === * If symmetry requested but not found, log info about manually making symmetry copies * Paper officially published, added citation widget for it === Fit Ligand === * Implemented command version * Implemented tool UI (but not much is behind those widgets yet) = ChimeraX completed = * Support HTML in table cells * Sequence viewer expand selection to columns * If chains have been created, use that info in determining residue principal atom * Log a message when computing secondary structure * Label missing segments, and offer control over when they get labeled * Stop auto-raising Log when logging occurs * Avoid Modeller tool crash by using takeRow() instead of deleteRow() * Have render/select histograms update if underlying values change * Fixed bug showing alignment from !MatchMaker if Smith-Waterman was used with selection restriction * Optionally output contacts/clashes per residue * Also work on: !AmberTools, atom-spec parser, profile grids, match→align