= Phenix = === Fit Loops === * Revamped command/backend to handle possibly remodeling *only* a gap (no side residues) * Fixed ChimeraX bug that incorrectly sequenced newly modeled gap residues * Have tool warn user when modeling too many residues === Emplace Local === * Tool interface tweaks based on feedback * Left-align text * Align check boxes * Space between check boxes and bottom buttons = ChimeraX completed = * Repeat last phi/psi in build structure if needed * Sequential model display controls in model panel * 'altlocs show/hide' command * Log now notes that an opened structure has altlocs * 'combine' command can retain chain IDs; smartened up combining sequences of combined chains * Swapaa/na allows multiple types * Work on moving to AmberTools23 * Investigate garbage-collection crashes * Tweaks to atom typing for SPICE * Join models through non-peptide bond