= Phenix =

=== Fit Ligand ===
 * Emit status message when job finishes
 * Optionally show H-bonds formed by fit ligand
 * Add citation info widget
 * Iteration with Tom Terwilliger to get:
   - JSON output
   - Success/failure indicator
   - Reason for any failure
   - Map CC
   - Multiple fits

= ChimeraX completed =
 * Integrated LAMMPS into main ChimeraX code
 * Session saving support in Profile Grids:
 * Significantly improved perceived load time of large alignments
   - Suppress unnecessary copying of sequences
   - If >10000 sequences, don't use AL2CO
   - Cache sequence information when computing identity histogram
 * Made "original look" preset undo tube helices
 * Fixed memory leak in command atom specs
 * Developer documentation:
   - Discussed the use of keyword args in commands
   - Described the Qt shim
 * Structure matching using alignment sequences; options:
   - High identity
   - Iteration
   - Just active region
   - Create region showing match
 * Sequence renaming
 * Aniso command
 * Deployed !UserError alternative for tools