= Phenix =

=== Local EM Fitting ===
 * Results dialog improvements
   - Limits scores to a reasonable number of digits
   - Keep sharpened map if shown
   - Symmetry copies
   - In-dialog help text, and adjusted size
   - Dock dialog so it's not easily lost
 * Alerted Randy that emplace_local is broken in the latest Phenix release candidate

=== Fit Ligand ===
 * Sent Dorothee what I would need in ligandfit JSON output
 * Tested a few systems and sent a problem report to Tom Terwilliger
   - Ligandfit was rejecting valid ligand PDB files

= ChimeraX completed =
 * Integrated LAMMPS into main ChimeraX code
 * Session saving support in Profile Grids:
 * Significantly improved perceived load time of large alignments
   - Suppress unnecessary copying of sequences
   - If >10000 sequences, don't use AL2CO
   - Cache sequence information when computing identity histogram
 * Made "original look" preset undo tube helices
 * Fixed memory leak in command atom specs
 * Developer documentation:
   - Discussed the use of keyword args in commands
   - Described the Qt shim
 * Structure matching using alignment sequences; options:
   - High identity
   - Iteration
   - Just active region
   - Create region showing match
 * Sequence renaming
 * Aniso command
 * Deployed !UserError alternative for tools