= Phenix = === Fit Loops === * If structure lacks sequence information, tell user how to supply it === Fit Ligand === * Functional blob picking * Added instructions for blob picking = ChimeraX completed = * !ViewDock - Don't forget about hidden ligands when saving session * Fixed bug where deleting atoms of a model and its submodels would cause a crash * Moved Log settings from main ChimeraX preferences to the Log tool * Speeded up opening large ligand files by 2x - Bottleneck was chain-reporting code for NMR ensembles * Altloc Explorer - Button to show/hide all existing altlocs - Report occupancy in tooltip (also in main 3D window) * !ProfileGrid - Reporting column info on the fly too slow for very large alignment; for those only report on hover * Added ability to time out / continue long-running blocking jobs * Alert users to use ASCII paths for Gromacs trajectories * Scenes - Skip models that don't save in sessions (e.g. individual 2D labels) - Interpolation of coordinate sets - Catch error restoring scene with deleted structure elements, warn user, and restore what we can - Remember more structure attributes in scenes, and interpolate simple numeric ones - Tool: - Save→Add and separate Add/Update buttons - Drag and drop to reorder scenes - When adding scene, ignore conflicting name if it was automatically generated