= Phenix =

=== Fit Ligand ===
 * Controls for hiding density near existing structure
   - Still needs tweaking because "mark maximum" doesn't know about surface display
 * Improved reliability of outline box display by using different API
 * Added "conformers" command option
 * Elaine added help page
 * Put some less-often-used options into an "Options" area to simplify initial dialog
 * Added dialog to solicit desired action if conflicting residue number provided

Phenix team will discuss what tool to work on next.

= ChimeraX completed =
 * !ViewDock
   - Don't forget about hidden ligands when saving session
 * Fixed bug where deleting atoms of a model and its submodels would cause a crash
 * Moved Log settings from main ChimeraX preferences to the Log tool
 * Speeded up opening large ligand files by 2x
   - Bottleneck was chain-reporting code for NMR ensembles
 * Altloc Explorer
   - Button to show/hide all existing altlocs
   - Report occupancy in tooltip (also in main 3D window)
 * !ProfileGrid
   - Reporting column info on the fly too slow for very large alignment; for those only report on hover
 * Added ability to time out / continue long-running blocking jobs
 * Alert users to use ASCII paths for Gromacs trajectories
 * Scenes
   - Skip models that don't save in sessions (e.g. individual 2D labels)
   - Interpolation of coordinate sets
   - Catch error restoring scene with deleted structure elements, warn user, and restore what we can
   - Remember more structure attributes in scenes, and interpolate simple numeric ones
   - Tool:
     - Save→Add and separate !Add/Update buttons
     - Drag and drop to reorder scenes
     - When adding scene, ignore conflicting name if it was automatically generated