**Phenix**
 * Decided on implementing Randy Read's fit-in-map tool.
 * Implemented command version
    * Executable name changed, so changed command name (phenix emplaceLocal) to correspond
    * Full-map arg now no longer required or accepted
      * Unclear how removing pre-fitted density will work
  * Implemented most of tool GUI
    * Needs place-marker mouse-mode control

**ChimeraX completed**
 * NIAID: Don't do missing-structure calculations when adding atoms to residue during copy
 * Coordinate set playback tool speed control
 * swapna command
 * Ensure !MatchMaker orders /A-F as expected
 * NIAID: Dock Prep tool
 * Sequence RMSD computation was wrong due to mis-indentation
 * Compute coulombic volumes
 * Developed charges for 5' phosphorylated nucleic acids
 * NIAID: Have Mol2 reader add missing-structure pseudobonds and change residue names like ALAxy to just ALA
 * NIAID: SDF with just a '0' in charges section means missing charges 
 * Sanity check PDB coordinates for NaN
 * NIAID: Add Charges tool
 * Support 8-character PDB IDs