= Attendees =

Selina, Zach, TomG,  Eric,  Elaine, Greg, Scooter, TomF

June 15, 2023

= Agenda =

* Selina Liu presenting, medical imaging segmentation using machine learning
* Discussion of ChimeraX manuscript for Protein Science, due July 31, 2023
* NIAID new contract
* !ProofPoint email filtering interaction with ChimeraX bug reports and mailing list.
* New hardware
* Review Action Items listed below

= Discussion Notes =

* NIAID contract
  - Contract is finalized
  - 10 months, start May 1
  - Will produce May monthly progress report soon

* Plato operating system update
  - Expect OS upgrade to Rocky 8 to be complete in a few weeks.
  - Crick should be updated early next week.  CentOS 7 file-system still available on disk.
  - CGL primary and backup are at Rocky 9.1.
  - Scooter fixed LDAP, web tools, working on clustermaker web service
  - Selina does not yet have an account.  IT is handling 50 new account backlog.

* Power outage Wed June 21, midnight
  - Will affect N108 server room where switch we use is located.

* Email filtering
  - We will tell UCSF IT we are ready to enable ProofPoint.
  - Expect some hiccups.

* GPUs for Selina's machine learning
  - Our 4 A40 GPU node is here but not installed.
  - Other GPU nodes are at Oyster Point storage and cannot be moved because our server room has lots of equipment stacked up waiting to be installed.

* Selina on machine learning
  - Described U-net, no-new-unet, and planned application to lung cancer tumor segmentation.
  - [https://docs.google.com/presentation/d/1Uabl7qpz77NN_av-_S3n94aHx8qW6tInW0MLwN06huA/edit#slide=id.p Slides]
  - [https://docs.google.com/document/d/1sdKY6jTOLdhRjBxKb9maMo7fKI-5rtCJJCSZEmxvlNE/edit Terminology]
  - [https://docs.google.com/document/d/1orr5Ym3wFndCG9g_2oBJH2bV_Ecp8JR4p-Jr_Ik6FSs/edit Articles]
= Action Items =

* Clean up !VirtualHosts on our web servers -- !Greg/Scooter
* Document new vpn setup on Linux -- Scooter
* Audit followup -- Scooter