= Attendees = * Lars, Nadya, Zach, Eric, Elaine, TomG, Scooter On-site Genentech Hall N436A = Agenda = * Lars Jensen presenting on proteomics work * ChimeraX 1.5 roadmap 5 minute quick look * Review Action Items listed below = Discussion Notes = * Lars Jensen on proteomics data sources, visualization and VR - Lars is from NOvo Nordisk Foundation Center for Protein Research. - Talk: Visualizing omics data on protein networks in 2D and 3D - Explained 10 ways to see that genes are functionally related - Talked about text mining including deep learning - Collecting all data sources is hard and boring - Can assign confidence scores to protein-protein functional interactions - Can transfer interaction knowledge to orthologs - Talked about Cytoscape String app for making meaning full omics graph depictions. - Testing if virtual reality feasible for large network visualization - Quest 2 standalone headset is cheap, 10 million sold, can reach large audience - Browser WebXR apps simple to deliver - VR apps for single cell expression data and also general network viz exist, but they need a Windows PC. - Lars used U-CIE coloring app and A-frame web vr on quest 2 and got smooth viewing of 14000 point data set. - Lars also tried 3400 node, 16000 edge Cytoscape exported network wrapped on a hemisphere in VR -- also fine performance. - Have not yet tried any data interaction in VR. * ChimeraX roadmap - Did not have time in today's meeting to look at this. = Action Items = * Clean up !VirtualHosts on our web servers -- !Greg/Scooter * Document new vpn setup on Linux -- Scooter * Audit followup -- Scooter