= Attendees = * Zach, Eric, Elaine, Greg, TomG, Scooter On-site Genentech Hall N436A = Agenda = * TomG NIAID contract progress * Create ChimeraX 1.4 roadmap * NIAID contract * Review Action Items listed below = Discussion Notes = * NIAID contract - Scooter met with MSC, UCSF contract people, and Darrell to work out hourly contract. - Contract expected to start May 1 and last 10 months. - Will have monthly progress reports - Includes two 5 day trips for TomG to visit RML and Bethesda. * Computer security audit - UCSF assigned us a system administrator Nick to help with security upgrade tasks. * CGL email - UCSF IT wants to redirect all CGL email through ProofPoint cloud scanning service. - Would have 25 Mbyte message size limit, no Python attachments, URLs converted to go through urldefense. - This impairs our daily work, mailing list Python attachments, bug report email with large attachments. - UCSF IT said understands our special needs and is evaluating. - Sali lab email has already converted to ProofPoint scanning. - Greg says he sent Sali lab Python script attachment earlier but has not heard back. - Possibly in the future we may host Trac and mailing lists offsite (e.g. google groups). - Aim is to not disrupt current working systems and keep email functioning well. * Wynton BeeGFS - BeeGFS was patched yesterday and seems to have fixed stability problem. - Patch also seemed to give 25% speedup. * Trac - Fewer Trac corrupted database problems recently - BeeGFS file system problems may be the cause of those. - Trac currently using SQLite and Python 2. - Want to upgrade to MariaDB (MySQL) and Python 3. - Currently updating Toolshed to MariaDB. * NIAID progress report for new contract (not yet funded) * Eric - Uniprot or mmCIF residue numbering now supported. - Trying to get NIH 3D presets on toolshed, held up by Toolshed issues. - Then will get Philip to install presets bundle in NIH 3D pipeline. - Then will switch NIH 3D scripts to use presets, and make pull request with changes. - Next task is probably copy/combine GUIs * TomG - Gave VR demo to NIH VR special interest group organized by Jeremy Swan. - About 50 viewers including NASA and other non-NIH people. - Video on YouTube. - Showed two person VR with Phil Cruz. - One participant had funding and collaboration suggestions at end. - AlphaFold Database updated, to late January 3rd release, 1 million structures - AlphaFold update to 2.2.0 in ChimeraX Colab, Wynton and Minsky in visvault - New alphafold error plots advertised in video demo and on twitter and in SBGrid webinar. * Zach - Today's ChimeraX now handles Jason Rubensteins heart echo cardiogram (4D). - Jason sent two more 4D dicom datasets, ChimeraX only sees first time point. - TomG will try the first data set in VR since Jason was specifically interested in VR. - Jason has VR equipment = Action Items = * Move toolshed to it's own IP address and it's own Apache instance -- !Greg/Scooter * Set up toolshed test instance (UCSF only) -- !Greg/Scooter * Clean up !VirtualHosts on our web servers -- !Greg/Scooter * Move webservices to https only and extensively test chimera to make sure it works * Create self-signed certificate for webservices-test -- ongoing, Greg has run into a weird error * Document new vpn setup on Linux -- Scooter * Set up 2-factor authentication for hal2 vpn -- Scooter * Audit followup -- Scooter