= Attendees =

* Zach, Eric,  Elaine, Greg, TomG, Scooter, TomF

On-site Genentech Hall N436A

= Agenda =

* Eric Phenix R24 grant progress
* Create ChimeraX 1.4 roadmap
* NIAID contract
* Review Action Items listed below

= Discussion Notes =

* Scooter and Elaine move to N453
  - Department asked Scooter and Elaine to move to N453.
  - Will happen in coming weeks.

* Phenix R24
  - Eric gave overview of Phenix and R24 proposal ChimeraX tasks
  - Showed demo of ChimeraX phenix douse command.
  - Discussion of whether Phenix REST server of subprocess call should be used to run Phenix methods.
  - Many disadvantages of REST, starting server, determining when it is ready, polling it, shutting it down.
  - Does not seem like Phenix has persistent state that would make REST attractive.
  - One advantage of REST would be having Phenix running on a different machine (cluster).  Rare case.
  - Scooter discussed DASK for parallelizing Python numpy/pandas jobs on a cluster like wynton, or on local cores.

* Slow downloads of ChimeraX
  - Elaine and TomG have 15-30 minute ChimeraX download times this week from home.
  - Both using sonic.net, but have fast connection to other sites.
  - Tom Ferrin and Scooter (comcast) had fast download times this week.
  - Greg (sonic) and Zach (comcast) have not tried yet.
  - Scooter notes entire UCSF Mission Bay campus has only 10 Gbit/sec internet connection.

* Wynton BeeGFS problem
  - Last week multiple day downtime was caused by BeeGFS file system bug, metadata server deadlock.
  - Caused by a single job from Schoichet lab using BeeGFS for scratch.
  - This job has been changed to use local disk scratch like all other jobs.
  - Giving BeeGFS vendor  test case so they can patch it.

* New Wynton GPUs
  - 13 new Wynton GPU nodes just received, 4 A40 GPUs each (48 GB each).
  - Brings Wynton GPUs from about 150 to 200.
  - Nvidia announced new H100 GPU with 80 GB.  Also RTX 4000 series expected in September 2022.

= Action Items =

* Move toolshed to it's own IP address and it's own Apache instance -- !Greg/Scooter
* Set up toolshed test instance (UCSF only) -- !Greg/Scooter
* Clean up !VirtualHosts on our web servers -- !Greg/Scooter
* Move webservices to https only and extensively test chimera to make sure it works
* Create self-signed certificate for webservices-test -- ongoing, Greg has run into a weird error
* Document new vpn setup on Linux -- Scooter
* Set up 2-factor authentication for hal2 vpn -- Scooter
* Audit followup -- Scooter