= Attendees =

* Zach, Eric,  Elaine, Greg, TomG, Scooter, TomF

= Agenda =

* Review Action Items listed below
* Renew NIAID contract -- SOW
* Make writing assignments for R01 Research Strategy section (Google doc)
  * What are our next steps with ML?
  * Why is integration with other tools so important?
  * Discuss revised LOS from Kleywegt, Burley, others?
* Create ChimeraX 1.4 roadmap
* Individual project updates

= Discussion Notes =

* Discussion of Trac database malformed problem

* Review of action items
  - Keep toolshed at django 3.2, supported to 2024
  - 5 web services issues will be discusssed at meeting today 2:15 with Scooter, Zach, Greg
  - VPN 2-factor authentication
    * Tom F says Radius support is not a shim, just a new server
    * Scooter notes we need smb plugin to Radius for password authentication

* Computer security audit
  - Department forced us to accept audit as is

* NIAID contract
  - Scooter will ping Darrell about new prime contractor, hopefully MSC
  - Current contract ends at end of February

* R01 resubmission
  - Due at NIH on March 5, probably due at UCSF contracts and grants Feb 21
  - Need a section on machine learning for structure prediction
  - Need a 1 page letter explaining changes, after revisions to text made
  - Google doc can be edited and new references added as needed using PMID
  - Scooter using PaperPile for formatting references, only works in Chrome
  - Progress report section needs to be updated through Feb 2022
  - TomG will write alphafold progress text, mention blast too
  - Want progress updated by next Thursday group meeting
  - Address reviewer comments mostly in research plan, not progress section
  - New letters from Burley and Kleywegt to mention machine learning


= Action Items =

* Complete updated R01 Progress Report by Thurs 1/27/22 group meeting
* ~~Setup meeting with NIH R01 program officer to discuss resubmission -- Tom Ferrin
* ~~Start resubmission process going with C&G -- TEF
* ~~Check update of toolshed to django 4.0 -- Greg~~ (Decided to stay at django 3.2)
* Move toolshed to it's own IP address and it's own Apache instance -- !Greg/Scooter
* Set up toolshed test instance (UCSF only) -- !Greg/Scooter
* Clean up !VirtualHosts on our web servers -- !Greg/Scooter
* Move webservices to https only & test (and test, and test) chimera to make sure it works
* Create self-signed certificate for webservices-test -- ongoing, Greg has run into a weird error
* Document new vpn setup on Linux -- Scooter
* Set up 2-factor authentication for hal2 vpn -- Scooter
* Audit followup -- Scooter