= Attendees =

  Elaine, Eric, Greg, Conrad, TomG, TomF

= Agenda =
  * Review action items from last meeting
  * Chimera 1.11.1 release
  * ChimeraX issues
    * Metadata for tools/bundles
      * Get toolshed/session-init funcs out of !__init!__?
  * Assign required site-visit functionality to people
  * Continuation of 8-29 discussion

= Discussion =
  * Previous action items:
    * Conrad '''will''' make http reference in ChimeraX About panel into hyperlink
    * Greg and TomG '''will''' investigate how "sym" command uses instancing and how it is reflected in x3d output
  * Chimera 1.11.1 release
    * Candidate releases are up except for 32-bit Windows
    * Need to implement fix for blastpdb before final 1.11.1
      - Fix by replacing Opal script for BlastProtein service with shell script that displays error message and exit with status 1
      - 1.11.1 will use BlastProtein2 as service name
      - Major change in nr format deflines
      - Wait until after general fix for blast on plato
      - Test if MDA is compatible with newest blast version
  * ChimeraX issues
    * Ribbon progress
      * Lots of stuff on Elaine's documentation page
      * Conrad ported some standalone helix code into ChimeraX but needs to complete it
    * Investigate protein h-bonds/ss-bonds in mmCIF
      * Only protein h-bonds are sheet h-bonds, no helix or general h-bonds
    * Display DSSP h-bonds for comparison with other sources (e.g., FindHBond)
      * DSSP only cares about h-bonds involving backbone, no sidechain-only h-bonds
      * May be useful for 3D printing
      * Low priority for now
    * Metadata for tools/bundles
      * Change in tool/bundle template
        * Greg showed new classifier format
        * For UI purposes, there is no API for GUI options in open or save panel for bundles for now
        * For extra open/save arguments, register them in custom initialization function
      * Get toolshed/session-init funcs out of !__init!__?
        * Create a Bundle class and put Bundle API methods in instance with standard name in !__init!__
  * Assign required site-visit functionality to people
    * Cytoscape and REST interface (Conrad, Scooter)
    * ~~Side view on PyQt (Greg)
    * Toolshed (Conrad, Greg)
    * Ribbons (Conrad)
    * IHM cross-link distribution histograms (TomG)
    * Chain contact graph (TomG)
    * Domains
      * Web service, Uniprot? (Eric)
      * Integration into hierarchy (Eric)
      * Interactive 2D graph (team)
    * IHM mmCIF support (TomG)
    * -----
    * String database (Scooter, Conrad)
    * Hydrogen bonds and contacts (Eric)
    * MAV (Eric)
    * Link to NGL, LiteMol (Scooter, Conrad, Greg)
    * Molprobity on Opal (Scooter)
    * UI cleanup (team)
  * Continuation of 8-29 discussion
    * Conrad presented Scooter's vision of UI (took an extra hour)
    * Split "Assembly" into top-level "Data source" and "assembly"
    * TomG and Conrad are looking into prototypes/mockups for more experience

= Outstanding Action Items =
  * Conrad will make http reference in ChimeraX About panel into hyperlink 
  * Greg and TomG will investigate how "sym" command uses instancing
  * Conrad will make sure that template tools directory is exempt from copyright updates