= Attendees = Elaine, Eric, Greg, Conrad, TomG, TomF = Agenda = * Review action items from last meeting * Chimera 1.11.1 release * ChimeraX issues * Meghan issues * Assign required site-visit functionality to people * Continuation of 8-29 discussion = Discussion = * Previous action items: * ChimeraX licensing * Click-through license for non-commercial ChimeraX is working * Embedded software list is included in distribution * Chimera 1.11.1 release * Candidate releases are up - Conrad is working on builds hanging on Windows * Need to implement fix for blastpdb before final 1.11.1 - Fix by replacing Opal script with shell script that displays error message and exit with status 1 - Waiting to see "final" format for pdbaa and nr FASTA files from NCBI * ChimeraX issues * Ribbon progress * Conrad implemented "peptide" keyword for "cartoon orient" option * Lots of stuff on Elaine's documentation page * Conrad is still working on curved (arc) strands * X3D export * Textures are not included * Triangle masks are honored * Instancing works for spheres and cylinders * Greg and TomG will investigate how "sym" command uses instancing * Investigate protein h-bonds/ss-bonds in mmCIF * Display DSSP h-bonds for comparison with other sources * Meghan Chimera (not ChimeraX) issues * We do not have resources to make ChimeraX usable for them by November * Chimera 1 struts now includes all h-bonds in pseudobond group as "normal" bonds in calculation * TomF will inform Meghan of our decision * Assign required site-visit functionality to people * Cytoscape and REST interface (Conrad, Scooter) * Side view on PyQt (Greg) * Toolshed (Conrad, Greg) * Ribbons (Conrad) * IHM cross-link distribution histograms (TomG) * Chain contact graph (TomG) * Domains * Web service, Uniprot? (Eric) * Integration into hierarchy (Eric) * Interactive 2D graph (team) * IHM mmCIF support (TBD) * ----- * String database (Scooter, Conrad) * Hydrogen bonds and contacts (Eric) * MAV (Eric) * Link to NGL, LiteMol (Scooter, Conrad, Greg) * Molprobity on Opal (Scooter) * UI cleanup (team) * Continuation of 8-29 discussion * Conrad presented Scooter's vision of UI (took an extra hour) * Split "Assembly" into top-level "Data source" and "assembly" * TomG and Conrad are looking into prototypes/mockups for more experience = Outstanding Action Items = * Setting up ChimeraX distribution: 1. ~~Conrad will implement click-through license 1. ~~Greg will create embedded software page with links (only) 1. Conrad will make http reference in About panel into hyperlink * Greg and TomG will investigate how "sym" command uses instancing