= Attendees = Elaine, Eric, Greg, TomF, TomG, Conrad, Scooter = Agenda = * Review action items from last meeting * Symmetry web service - need documented API * Discuss 1.11 release * ChimeraX home page * Chimera stereo announcement ([http://www.cgl.ucsf.edu/chimera/docindex.html UCSF Chimera Documentation Index]) * Change session restore API so objects constructed in normal Python fashion rather than separating new and __init__. Needed to make it easy for outside developers (TomG) * mmCIF support effort, Phenix and COOT = Discussion = * Chimera 1.11 * Need to test Tk 8.6.5- builds on all platforms * Symmetry web service - need documented API * Waiting on Andreas for documentation * Chimera home page is complete for now * URL in installer works * Need to make symlink in public tree to docs so that "preview" URLs do not appear in public pages (Scooter, Elaine) * Make sure preview.rbvi.ucsf.edu/chimerax works * Send out Chimera stereo announcement to chimera-users (Elaine) * Need proposal for new restore API (ChimeraX team, TomG lead) to simplify writing session restore code for developers * mmCIF files from Oliver did not work * Phenix mmCIF is missing entity_polyseq table that specifies SEQRES-equivalent information. Need to guess at what residues are connected and where chain breaks appear. * COOT dumps a PDB file into an mmCIF atom_site table. No entity_polyseq table. All atoms in same entity with duplicate values in several fields. Works fine in COOT, Phenix and PyMol according to Oliver. * PDB asks for large files in mmCIF file using Phenix or CCP4. mmCIF from Phenix is first generated and then post-processed into acceptable submission form. Get Oliver to run the Phenix standalone program? (TomG) Also ask about CCP4 and RefMac mmCIF output. = Outstanding Action Items = * Friends and Family bugs outstanding * Ribbon flips too often (Conrad) * Will try out "no orientation atom" method * Stretch goals * Side view elements displays but need to make interactive (Greg) * Finish mmCIF NMR structure support, need to copy secondary structure data to all models (Greg) * Figure out and fix Mac OS X runtime linking bug (TomG/Greg/Conrad) * Check executables and dynamic libraries to make sure they only reference internal or standard libraries (Greg) * ~~Chimera 1.11 release: * ~~Build with Tk 8.6.5- in daily build ([https://plato.cgl.ucsf.edu/trac/chimera/ticket/14424 ticket 14424]) * Mac - balloons not working quite right * Windows - needs to build * Linux - need to be tested