id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
9282	OpenGL out of memory error	chimerax-bug-report@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        Windows-10-10.0.19041
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: access violation

Thread 0x00007228 (most recent call first):
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\threading.py"", line 306 in wait
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\threading.py"", line 558 in wait
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\threading.py"", line 1252 in run
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\threading.py"", line 932 in _bootstrap_inner
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\threading.py"", line 890 in _bootstrap

Current thread 0x00007a80 (most recent call first):
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\numpy\linalg\linalg.py"", line 546 in inv
  File """", line 5 in inv
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\geometry\matrix.py"", line 130 in invert_matrix
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\geometry\place.py"", line 190 in inverse
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\graphics\view.py"", line 1019 in move
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\graphics\view.py"", line 986 in rotate
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\mouse_modes\std_modes.py"", line 368 in _rotate
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\mouse_modes\std_modes.py"", line 290 in mouse_drag
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\mouse_modes\mousemodes.py"", line 537 in _dispatch_mouse_event
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\mouse_modes\mousemodes.py"", line 638 in 
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\graphics.py"", line 57 in event
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py"", line 293 in event_loop
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py"", line 866 in init
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py"", line 1015 in 
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py"", line 87 in _run_code
  File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py"", line 194 in _run_module_as_main


Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open E:\\\Lambda\\\portal-capsid\\\capsid-gpE.pdb

Summary of feedback from opening E:\\\Lambda\\\portal-capsid\\\capsid-gpE.pdb  
---  
warning | Ignored bad PDB record found on line 83297  
END  
  
Chain information for capsid-gpE.pdb #1  
---  
Chain | Description  
0 1 2 3 I J K L M k l m n o p q r s t u v w x y z | No description available  
4 5 6 7 N | No description available  
D E F | No description available  
  

> open E:\\\Lambda\\\portal-capsid\\\portal-adaptor-coot-0.pdb

Chain information for portal-adaptor-coot-0.pdb #2  
---  
Chain | Description  
A | No description available  
B C D E F H I J K L | No description available  
G | No description available  
M N O P Q R S T U V W X | No description available  
  

> set bgColor white

> style stick

Changed 133084 atom styles  

> show cartoons

An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command ""graphics restart"" after changing the settings that caused the error.  
  
Traceback (most recent call last):  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\updateloop.py"", line 73, in draw_new_frame  
view.draw(check_for_changes = False)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\view.py"", line 165, in draw  
self._draw_scene(camera, drawings)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\view.py"", line 201, in _draw_scene  
shadow, multishadow = self._compute_shadowmaps(opaque_drawings,
transparent_drawings, camera)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\view.py"", line 579, in _compute_shadowmaps  
shadow_enabled = r.shadow.use_shadow_map(camera, shadow_drawings)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\opengl.py"", line 1405, in use_shadow_map  
draw_depth(r, sdrawings, opaque_only = not
r.material.transparent_cast_shadows)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\drawing.py"", line 1522, in draw_depth  
draw_opaque(r, drawings)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\drawing.py"", line 1498, in draw_opaque  
_draw_multiple(drawings, renderer, Drawing.OPAQUE_DRAW_PASS)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\drawing.py"", line 1511, in _draw_multiple  
d.draw(renderer, draw_pass)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\drawing.py"", line 751, in draw  
self.draw_self(renderer, draw_pass)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\drawing.py"", line 758, in draw_self  
self._draw_geometry(renderer, opaque_only = any_transp)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\drawing.py"", line 785, in _draw_geometry  
ds.activate_bindings(renderer)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\drawing.py"", line 1858, in activate_bindings  
self.update_buffers()  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\drawing.py"", line 1846, in update_buffers  
b.update_buffer_data(data)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\opengl.py"", line 2662, in update_buffer_data  
GL.glBufferData(btype, size, d, GL.GL_STATIC_DRAW)  
File ""src/latebind.pyx"", line 51, in OpenGL_accelerate.latebind.Curry.__call__  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\OpenGL\GL\VERSION\GL_1_5.py"", line 89, in glBufferData  
return baseOperation( target, size, data, usage )  
File ""src/latebind.pyx"", line 39, in
OpenGL_accelerate.latebind.LateBind.__call__  
File ""src/wrapper.pyx"", line 318, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File ""src/wrapper.pyx"", line 311, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File ""src/errorchecker.pyx"", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1285,  
description = b'\xc4\xda\xb4\xe6\xb2\xbb\xd7\xe3',  
baseOperation = glBufferData,  
pyArgs = (  
34963,  
53071920,  
array([[ 1, 0, 11],  
[ 1, 11, 12],  
[ 2, 1, 12],  
.....,  
GL_STATIC_DRAW,  
),  
cArgs = (  
34963,  
53071920,  
array([[ 1, 0, 11],  
[ 1, 11, 12],  
[ 2, 1, 12],  
.....,  
GL_STATIC_DRAW,  
),  
cArguments = (  
34963,  
53071920,  
array([[ 1, 0, 11],  
[ 1, 11, 12],  
[ 2, 1, 12],  
.....,  
GL_STATIC_DRAW,  
)  
)  
  

QMainWindowLayout::tabPosition called with out-of-bounds value '0'  




OpenGL version: 3.3.0 NVIDIA 531.79
OpenGL renderer: NVIDIA GeForce GTX 1070/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Dell Inc.
Model: XPS 8920
OS: Microsoft Windows 10 专业版 (Build 19045)
Memory: 17,078,681,600
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-7700 CPU @ 3.60GHz
OSLanguage: zh-CN
Locale: ('zh_CN', 'cp936')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.5.0
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0.1
    ChimeraX-AddH: 2.1.6
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.13.2
    ChimeraX-AtomicLibrary: 3.1.3
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.2.1
    ChimeraX-CommandLine: 1.1.4
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.5
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.1.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.3
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.2.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.3
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.0.1
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.1
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.4.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.1
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.7.6
    ChimeraX-uniprot: 2.1
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 5.0.9
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 2.0.1
    matplotlib: 3.3.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.3
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 21.0.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.18
    psutil: 5.7.2
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pywin32: 228
    pyzmq: 22.0.3
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

}}}
"	defect	closed	normal		Graphics		nonchimerax						all	ChimeraX