id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 9248 Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-13.0.1-arm64-arm-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. 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""CFBundleShortVersionString"" : ""3.9.11, (c) 2001-2021 Python Software Foundation."", ""CFBundleIdentifier"" : ""org.python.python"", ""size"" : 2555904, ""uuid"" : ""5ee765c2-b52f-3980-9781-73db1abd2bde"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/Python"", ""name"" : ""Python"", ""CFBundleVersion"" : ""3.9.11"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4329570304, ""CFBundleShortVersionString"" : ""1.6.1"", ""CFBundleIdentifier"" : ""edu.ucsf.cgl.ChimeraX"", ""size"" : 16384, ""uuid"" : ""a5992708-d5b4-36ec-ac0a-e525f6105b56"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX"", ""name"" : ""ChimeraX"", ""CFBundleVersion"" : ""1.6.1.0"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7164616704, ""size"" : 566464, ""uuid"" : ""de46dd52-4994-3fd8-b4b4-e352a1a19354"", ""path"" : ""\/usr\/lib\/dyld"", ""name"" : ""dyld"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4394516480, ""size"" : 20709376, ""uuid"" : ""6b8373ed-7142-34ea-9b4b-9f502e8a6f33"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib"", ""name"" : ""libopenblas64_.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5771362304, ""size"" : 154959872, ""uuid"" : ""1b766dc4-2490-3425-8726-45387675bc14"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore"", ""name"" : ""QtWebEngineCore"" }, { ""size"" : 0, ""source"" : ""A"", ""base"" : 0, ""uuid"" : ""00000000-0000-0000-0000-000000000000"" } ], ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=3.4G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.4G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 1152K 9 \nActivity Tracing 256K 1 \nCG backing stores 7824K 9 \nCG image 576K 27 \nColorSync 640K 29 \nCoreAnimation 288K 18 \nCoreGraphics 32K 2 \nCoreServices 624K 2 \nCoreUI image data 1888K 27 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 1.8G 365 \nMALLOC guard page 192K 11 \nMALLOC_LARGE (reserved) 15.0M 1 reserved VM address space (unallocated)\nMALLOC_MEDIUM (reserved) 480.0M 6 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)\nMach message 64K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 784K 49 \nStack 176.2M 50 \nStack Guard 56.0M 1 \nVM_ALLOCATE 327.1M 456 \nVM_ALLOCATE (reserved) 160.0M 2 reserved VM address space (unallocated)\n__AUTH 1903K 358 \n__AUTH_CONST 24.6M 586 \n__CTF 756 1 \n__DATA 20.8M 754 \n__DATA_CONST 38.2M 761 \n__DATA_DIRTY 1983K 229 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__LINKEDIT 797.7M 174 \n__OBJC_CONST 4707K 323 \n__OBJC_RO 65.1M 1 \n__OBJC_RW 1981K 1 \n__TEXT 837.4M 782 \ndyld private memory 304K 3 \nmapped file 212.0M 57 \nshared memory 3136K 22 \n=========== ======= ======= \nTOTAL 5.4G 5129 \nTOTAL, minus reserved VM space 4.4G 5129 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""6112d17137f5d11121dcd4e2"", ""factorPackIds"" : { }, ""deploymentId"" : 240000155 }, { ""rolloutId"" : ""6112e3d2fc54bc3389840661"", ""factorPackIds"" : { ""SIRI_TEXT_TO_SPEECH"" : ""6351d47a4ac5153dd52d5fc9"" }, ""deploymentId"" : 240000234 } ], ""experiments"" : [ ] }, ""reportNotes"" : [ ""dyld_process_snapshot_create_for_process failed with 5"" ] } ===== Log before crash start ===== > ui autostart toolbar Error running startup command 'ui autostart toolbar': Missing or invalid ""doStart"" argument: Expected true or false (or 1 or 0) UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/Bruce/Desktop/* Docking B0AT1 SIT1 TMPRSS2 FURIN 2023/*** BEST > RESULTS ACE2 SIT1 TMPRSS2 ADAM17 7Y76 & Alphafold/**** Working files Hediger > for consolidating/Revisions new Site #2 w TMPRSS2_X2/4-mer 7Y76 site1 site 2 > site 3 ADAM17_Y1_Y2_Y3 TMPRSS2_X1_X2.pdb"" 4-mer 7Y76 site1 site 2 site 3 ADAM17_Y1_Y2_Y3 TMPRSS2_X1_X2.pdb title: SIT1-ACE2-Ba.5 RBD [more info...] Chain information for 4-mer 7Y76 site1 site 2 site 3 ADAM17_Y1_Y2_Y3 TMPRSS2_X1_X2.pdb #1 --- Chain | Description | UniProt A C | angiotensin-converting enzyme 2 | ACE2_HUMAN -6-805 B D | SIT1 | S6A20_HUMAN 1-592 X1 X2 | No description available | Y1 Y2 Y3 | No description available | > select /C:19-768 6102 atoms, 6268 bonds, 750 residues, 1 model selected > surface hidePatches sel > select /D:11-583 4499 atoms, 4624 bonds, 573 residues, 1 model selected > surface hidePatches sel > select /D:11-583 4499 atoms, 4624 bonds, 573 residues, 1 model selected > hide sel target a > select /B:11-583 4499 atoms, 4624 bonds, 573 residues, 1 model selected > hide sel target a > select /C:19-768 6102 atoms, 6268 bonds, 750 residues, 1 model selected > hide sel target a > select /A 6102 atoms, 6268 bonds, 750 residues, 1 model selected > surface sel > ui tool show ""Color Actions"" > color sel violet > select clear > ui tool show Toolbar > lighting simple > graphics silhouettes true > lighting shadows true > lighting shadows false > select /Y2 2464 atoms, 2510 bonds, 254 residues, 1 model selected > ui tool show ""Color Actions"" > color sel dodger blue > color sel light green > color sel pale green > color sel light green > surface sel > select /X1 3109 atoms, 3177 bonds, 4 pseudobonds, 326 residues, 2 models selected > surface (#!1 & sel) > ui tool show ""Color Actions"" > color sel dodger blue > select /X2 3109 atoms, 3177 bonds, 4 pseudobonds, 326 residues, 2 models selected > color sel dodger blue > surface (#!1 & sel) > surface hidePatches (#!1 & sel) > select /Y2 2464 atoms, 2510 bonds, 254 residues, 1 model selected > surface hidePatches (#!1 & sel) > select /Y3 2464 atoms, 2510 bonds, 254 residues, 1 model selected > ui tool show ""Color Actions"" > color sel light green > select /Y1 2464 atoms, 2510 bonds, 254 residues, 1 model selected > color sel light green > ui tool show Toolbar > show sel surfaces > select /X1 3109 atoms, 3177 bonds, 4 pseudobonds, 326 residues, 2 models selected > show sel surfaces > select /X2 3109 atoms, 3177 bonds, 4 pseudobonds, 326 residues, 2 models selected > show sel surfaces > select /Y2 2464 atoms, 2510 bonds, 254 residues, 1 model selected > show sel surfaces > select /Y3 2464 atoms, 2510 bonds, 254 residues, 1 model selected > show sel surfaces > select clear > save /Users/Bruce/Desktop/image122.png supersample 3 > save /Users/Bruce/Desktop/image123.png supersample 3 > save ""/Users/Bruce/Desktop/* Docking B0AT1 SIT1 TMPRSS2 FURIN 2023/*** BEST > RESULTS ACE2 SIT1 TMPRSS2 ADAM17 7Y76 & Alphafold/**** Working files Hediger > for consolidating/Revisions new Site #2 w TMPRSS2_X2/monomer solid 7Y76 > site1 site 2 site 3 ADAM17_Y1_Y2_Y3 TMPRSS2_X1_X2 exploded monomer.cxs"" > save /Users/Bruce/Desktop/image124.png supersample 3 > save /Users/Bruce/Desktop/image125.png supersample 3 > save /Users/Bruce/Desktop/image126.png supersample 3 > select /X1 3109 atoms, 3177 bonds, 4 pseudobonds, 326 residues, 2 models selected > hide (#!1 & sel) target a > select /X1 3109 atoms, 3177 bonds, 4 pseudobonds, 326 residues, 2 models selected > hide (#!1 & sel) target a > surface hidePatches (#!1 & sel) > select /Y3 2464 atoms, 2510 bonds, 254 residues, 1 model selected > surface hidePatches (#!1 & sel) > hide (#!1 & sel) target a > select /Y1 2464 atoms, 2510 bonds, 254 residues, 1 model selected > surface hidePatches (#!1 & sel) > hide (#!1 & sel) target a > select clear > save /Users/Bruce/Desktop/image127.png supersample 3 > select /X2 3109 atoms, 3177 bonds, 4 pseudobonds, 326 residues, 2 models selected > surface hidePatches (#!1 & sel) > hide (#!1 & sel) target a > save /Users/Bruce/Desktop/image128.png supersample 3 > select /B 4499 atoms, 4624 bonds, 573 residues, 1 model selected > surface sel > ui tool show ""Color Actions"" > color sel dark gray > color sel gray > color sel dim gray > color sel gray > color sel dark gray > color (#!1 & sel) gray > color (#!1 & sel) dark gray > select clear > save /Users/Bruce/Desktop/image129.png supersample 3 > select /X2 3109 atoms, 3177 bonds, 4 pseudobonds, 326 residues, 2 models selected > surface (#!1 & sel) > save /Users/Bruce/Desktop/image130.png supersample 3 > transparency (#!1 & sel) 50 > surface style #1.5 dot > surface style #1.5 solid > transparency (#!1 & sel) 30 > transparency (#!1 & sel) 80 > transparency (#!1 & sel) 0 > select clear > save /Users/Bruce/Desktop/image131.png supersample 3 > select /X2 3109 atoms, 3177 bonds, 4 pseudobonds, 326 residues, 2 models selected > surface hidePatches (#!1 & sel) > save /Users/Bruce/Desktop/image132.png supersample 3 > select /X2 3109 atoms, 3177 bonds, 4 pseudobonds, 326 residues, 2 models selected > surface (#!1 & sel) > select /Y2 2464 atoms, 2510 bonds, 254 residues, 1 model selected > surface hidePatches (#!1 & sel) > hide (#!1 & sel) target a > save /Users/Bruce/Desktop/image133.png supersample 3 > save /Users/Bruce/Desktop/image134.png supersample 3 > select /Y2 2464 atoms, 2510 bonds, 254 residues, 1 model selected > surface (#!1 & sel) > save /Users/Bruce/Desktop/image135.png supersample 3 > select /X2 3109 atoms, 3177 bonds, 4 pseudobonds, 326 residues, 2 models selected > surface hidePatches (#!1 & sel) > save /Users/Bruce/Desktop/image136.png supersample 3 > select /X2 3109 atoms, 3177 bonds, 4 pseudobonds, 326 residues, 2 models selected > surface (#!1 & sel) > save /Users/Bruce/Desktop/image137.png supersample 3 > select /B/D 8998 atoms, 9248 bonds, 1146 residues, 1 model selected > surface (#!1 & sel) > color (#!1 & sel) dark gray > select /A/C 12204 atoms, 12536 bonds, 1500 residues, 1 model selected > surface (#!1 & sel) > ui tool show ""Color Actions"" > color sel violet > select clear > save /Users/Bruce/Desktop/image138.png supersample 3 > select /X2 3109 atoms, 3177 bonds, 4 pseudobonds, 326 residues, 2 models selected > surface hidePatches (#!1 & sel) > save /Users/Bruce/Desktop/image139.png supersample 3 > select /X2 3109 atoms, 3177 bonds, 4 pseudobonds, 326 residues, 2 models selected > surface (#!1 & sel) > select /Y2 2464 atoms, 2510 bonds, 254 residues, 1 model selected > surface hidePatches (#!1 & sel) > save /Users/Bruce/Desktop/image140.png supersample 3 > select /X2 3109 atoms, 3177 bonds, 4 pseudobonds, 326 residues, 2 models selected > select /Y2 2464 atoms, 2510 bonds, 254 residues, 1 model selected > surface (#!1 & sel) > select clear > save ""/Users/Bruce/Desktop/* Docking B0AT1 SIT1 TMPRSS2 FURIN 2023/*** BEST > RESULTS ACE2 SIT1 TMPRSS2 ADAM17 7Y76 & Alphafold/**** Working files Hediger > for consolidating/Revisions new Site #2 w TMPRSS2_X2/4-mer solid 7Y76 site > #2 ADAM17_Y1_Y2_Y3 TMPRSS2_X1_X2.cxs"" QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: > ui autostart toolbar Error running startup command 'ui autostart toolbar': Missing or invalid ""doStart"" argument: Expected true or false (or 1 or 0) UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83 OpenGL renderer: Apple M1 OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: Mac mini Model Identifier: Macmini9,1 Model Number: Z12P000KGLL/A Chip: Apple M1 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 8419.41.10 OS Loader Version: 8419.41.10 Software: System Software Overview: System Version: macOS 13.0.1 (22A400) Kernel Version: Darwin 22.1.0 Time since boot: 31 days, 12 hours, 43 minutes Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: DELL U3014: Resolution: 2560 x 1600 UI Looks like: 2560 x 1600 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-Clipper: 0.20.0 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.6.dev0 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit can't reproduce Tom Goddard all ChimeraX