id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 7588 Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics 640 chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.15.7-x86_64-i386-64bit ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [80116] Path: /Volumes/VOLUME/*/ChimeraX-1.4.app/Contents/MacOS/ChimeraX Identifier: ChimeraX Version: ??? Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [80116] User ID: 501 Date/Time: 2022-09-13 15:01:30.886 +1000 OS Version: Mac OS X 10.15.7 (19H2026) Report Version: 12 Anonymous UUID: 1C2557AF-54B9-0E76-3EE0-272FB07B9387 Sleep/Wake UUID: 04BE754D-F38E-4623-A434-A8AE19FC3DF4 Time Awake Since Boot: 400000 seconds Time Since Wake: 1700 seconds System Integrity Protection: enabled Notes: Translocated Process Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Application Specific Information: abort() called Application Specific Signatures: Graphics hardware encountered an error and was reset: 0x00000813 Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff6771e32a __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff677dae60 pthread_kill + 430 2 libsystem_c.dylib 0x00007fff6763593e raise + 26 3 libsystem_platform.dylib 0x00007fff677cf5fd _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 libsystem_c.dylib 0x00007fff676a5808 abort + 120 6 libGPUSupportMercury.dylib 0x00007fff4ec0c0a5 gpusGenerateCrashLog.cold.1 + 95 7 libGPUSupportMercury.dylib 0x00007fff4ec0318f gpusGenerateCrashLog + 89 8 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff2620df08 gpusKillClientExt + 9 9 libGPUSupportMercury.dylib 0x00007fff4ec046a1 gpusSubmitDataBuffers + 490 10 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff2547a086 IntelCommandBuffer::getNew(GLDContextRec*) + 48 11 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff25479e94 intelSubmitCommands + 171 12 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff255a4d7a gldPresentFramebufferData + 120 13 GLEngine 0x00007fff3844b8d1 glSwap_Exec + 97 14 com.apple.opengl 0x00007fff3842d473 CGLFlushDrawable + 59 15 com.apple.AppKit 0x00007fff2b107caa -[NSOpenGLContext flushBuffer] + 20 16 libqcocoa.dylib 0x0000000124dab313 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0x00007fff393efbb4 CA::Transaction::commit() + 644 58 com.apple.AppKit 0x00007fff2aefe041 __62+[CATransaction(NSCATransaction) NS_setFlushesWithDisplayLink]_block_invoke + 266 59 com.apple.AppKit 0x00007fff2b61c920 ___NSRunLoopObserverCreateWithHandler_block_invoke + 41 60 com.apple.CoreFoundation 0x00007fff2daea575 __CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION__ + 23 61 com.apple.CoreFoundation 0x00007fff2daea4a7 __CFRunLoopDoObservers + 457 62 com.apple.CoreFoundation 0x00007fff2dae9a45 __CFRunLoopRun + 874 63 com.apple.CoreFoundation 0x00007fff2dae907e CFRunLoopRunSpecific + 462 64 com.apple.HIToolbox 0x00007fff2c715aad RunCurrentEventLoopInMode + 292 65 com.apple.HIToolbox 0x00007fff2c7156e4 ReceiveNextEventCommon + 359 66 com.apple.HIToolbox 0x00007fff2c715569 _BlockUntilNextEventMatchingListInModeWithFilter + 64 67 com.apple.AppKit 0x00007fff2ad5e3c9 _DPSNextEvent + 883 68 com.apple.AppKit 0x00007fff2ad5cc10 -[NSApplication(NSEvent) 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libsystem_pthread.dylib 0x00007fff677db109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff677d6b8b thread_start + 15 Thread 19: 0 libsystem_pthread.dylib 0x00007fff677d6b68 start_wqthread + 0 Thread 20: 0 libsystem_pthread.dylib 0x00007fff677d6b68 start_wqthread + 0 Thread 21:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff67717dea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff67718160 mach_msg + 60 2 QtWebEngineCore 0x000000011d1db9c6 0x1192ab000 + 66259398 3 QtWebEngineCore 0x000000011d19fd5f 0x1192ab000 + 66014559 4 QtWebEngineCore 0x000000011d1a053a 0x1192ab000 + 66016570 5 QtWebEngineCore 0x000000011d1a040d 0x1192ab000 + 66016269 6 QtWebEngineCore 0x000000011d1d44a8 0x1192ab000 + 66229416 7 libsystem_pthread.dylib 0x00007fff677db109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff677d6b8b thread_start + 15 Thread 22:: ThreadPoolBackgroundWorker 0 libsystem_kernel.dylib 0x00007fff67717dea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff67718160 mach_msg + 60 2 QtWebEngineCore 0x000000011d1db9c6 0x1192ab000 + 66259398 3 QtWebEngineCore 0x000000011d19fd5f 0x1192ab000 + 66014559 4 QtWebEngineCore 0x000000011d1a053a 0x1192ab000 + 66016570 5 QtWebEngineCore 0x000000011d1a037d 0x1192ab000 + 66016125 6 QtWebEngineCore 0x000000011d1d44a8 0x1192ab000 + 66229416 7 libsystem_pthread.dylib 0x00007fff677db109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff677d6b8b thread_start + 15 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x000000010f8aadc0 rcx: 0x00007fb58f955a58 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007fb58f955a80 rsp: 0x00007fb58f955a58 r8: 0x00007fb58f955f48 r9: 0xd699f5b8c959fa68 r10: 0x000000010f8aadc0 r11: 0x0000000000000246 r12: 0x0000000000000307 r13: 0x00007fb59118b518 r14: 0x0000000000000006 r15: 0x0000000000000016 rip: 0x00007fff6771e32a rfl: 0x0000000000000246 cr2: 0x000000010f87d150 Logical CPU: 0 Error Code: 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0x7fff673d1fff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib 0x7fff673d2000 - 0x7fff673dbff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib 0x7fff673dc000 - 0x7fff6746efdb libcorecrypto.dylib (866.140.2) /usr/lib/system/libcorecrypto.dylib 0x7fff6757b000 - 0x7fff675bbff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib 0x7fff675bc000 - 0x7fff675f2fff libdyld.dylib (750.7) /usr/lib/system/libdyld.dylib 0x7fff675f3000 - 0x7fff675f3ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib 0x7fff675f4000 - 0x7fff67600ff3 libkxld.dylib (6153.141.66) /usr/lib/system/libkxld.dylib 0x7fff67601000 - 0x7fff67601ff7 liblaunch.dylib (1738.140.3) /usr/lib/system/liblaunch.dylib 0x7fff67602000 - 0x7fff67607ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib 0x7fff67608000 - 0x7fff6760aff3 libquarantine.dylib (110.40.6) /usr/lib/system/libquarantine.dylib 0x7fff6760b000 - 0x7fff6760cff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib 0x7fff6760d000 - 0x7fff67624ff3 libsystem_asl.dylib (377.60.4) /usr/lib/system/libsystem_asl.dylib 0x7fff67625000 - 0x7fff67625ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib 0x7fff67626000 - 0x7fff676adfff libsystem_c.dylib (1353.100.4) /usr/lib/system/libsystem_c.dylib 0x7fff676ae000 - 0x7fff676b1ffb libsystem_configuration.dylib (1061.141.2) /usr/lib/system/libsystem_configuration.dylib 0x7fff676b2000 - 0x7fff676b5fff libsystem_coreservices.dylib (114.1) /usr/lib/system/libsystem_coreservices.dylib 0x7fff676b6000 - 0x7fff676befff libsystem_darwin.dylib (1353.100.4) /usr/lib/system/libsystem_darwin.dylib 0x7fff676bf000 - 0x7fff676c6fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib 0x7fff676c7000 - 0x7fff676c8ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib 0x7fff676c9000 - 0x7fff67716ff7 libsystem_info.dylib (538.1) /usr/lib/system/libsystem_info.dylib 0x7fff67717000 - 0x7fff67743ff7 libsystem_kernel.dylib (6153.141.66) /usr/lib/system/libsystem_kernel.dylib 0x7fff67744000 - 0x7fff6778bfff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib 0x7fff6778c000 - 0x7fff677b3fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib 0x7fff677b4000 - 0x7fff677c1ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff677c2000 - 0x7fff677cbff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib 0x7fff677cc000 - 0x7fff677d4fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib 0x7fff677d5000 - 0x7fff677dffff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib 0x7fff677e0000 - 0x7fff677e4ff3 libsystem_sandbox.dylib (1217.141.9) /usr/lib/system/libsystem_sandbox.dylib 0x7fff677e5000 - 0x7fff677e7fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib 0x7fff677e8000 - 0x7fff677efffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib 0x7fff677f0000 - 0x7fff67806ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib 0x7fff67808000 - 0x7fff6780dff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff6780e000 - 0x7fff67843ffe libxpc.dylib (1738.140.3) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 12 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 267001 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%) Writable regions: Total=998.2M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=998.2M(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 384K 3 Activity Tracing 256K 1 CG backing stores 6420K 10 CG image 5748K 28 CoreAnimation 136K 15 CoreGraphics 8K 1 CoreImage 28K 3 CoreUI image data 3116K 25 Foundation 20K 2 Kernel Alloc Once 8K 1 MALLOC 480.4M 896 MALLOC guard page 32K 8 MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated) MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated) Mach message 16K 2 OpenGL GLSL 384K 4 STACK GUARD 88K 22 Stack 154.2M 23 Stack Guard 56.0M 1 VM_ALLOCATE 89.4M 180 __DATA 63.7M 593 __DATA_CONST 92K 7 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 418.2M 173 __OBJC_RO 32.3M 1 __OBJC_RW 1908K 2 __TEXT 631.5M 566 __UNICODE 564K 1 mapped file 86.9M 47 shared memory 3000K 29 =========== ======= ======= TOTAL 2.2G 2648 TOTAL, minus reserved VM space 2.0G 2648 Log: UCSF ChimeraX version: 1.4 (2022-06-03) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 INTEL-14.7.28 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 640 OpenGL vendor: Intel Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.0, Qt 6.3.0 Qt runtime version: 6.3.0 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro14,1 Processor Name: Dual-Core Intel Core i5 Processor Speed: 2.3 GHz Number of Processors: 1 Total Number of Cores: 2 L2 Cache (per Core): 256 KB L3 Cache: 4 MB Hyper-Threading Technology: Enabled Memory: 8 GB Boot ROM Version: 451.140.1.0.0 SMC Version (system): 2.43f11 Software: System Software Overview: System Version: macOS 10.15.7 (19H2026) Kernel Version: Darwin 19.6.0 Time since boot: 44 days 22:42 Graphics/Displays: Intel Iris Plus Graphics 640: Chipset Model: Intel Iris Plus Graphics 640 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x5926 Revision ID: 0x0006 Metal: Supported, feature set macOS GPUFamily2 v1 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 Babel: 2.10.1 backcall: 0.2.0 blockdiag: 3.0.0 certifi: 2021.10.8 cftime: 1.6.0 charset-normalizer: 2.0.12 ChimeraX-AddCharge: 1.2.3 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.4.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.39.1 ChimeraX-AtomicLibrary: 7.0 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.1 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.7 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.1 ChimeraX-CommandLine: 1.2.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.4 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.1.5 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.6 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.7 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.5.5 ChimeraX-ModelPanel: 1.3.2 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.9 ChimeraX-PDB: 2.6.6 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.8 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.0.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.1 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.18.3 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.26 debugpy: 1.6.0 decorator: 5.1.1 docutils: 0.17.1 entrypoints: 0.4 filelock: 3.4.2 fonttools: 4.33.3 funcparserlib: 1.0.0 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.27 imagecodecs: 2021.11.20 imagesize: 1.3.0 ipykernel: 6.6.1 ipython: 7.31.1 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.0.3 jupyter-client: 7.1.0 jupyter-core: 4.10.0 kiwisolver: 1.4.2 line-profiler: 3.4.0 lxml: 4.7.1 lz4: 3.1.10 MarkupSafe: 2.1.1 matplotlib: 3.5.1 matplotlib-inline: 0.1.3 msgpack: 1.0.3 nest-asyncio: 1.5.5 netCDF4: 1.5.8 networkx: 2.6.3 numexpr: 2.8.1 numpy: 1.22.1 openvr: 1.16.802 packaging: 21.0 ParmEd: 3.4.3 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.0.1 pip: 21.3.1 pkginfo: 1.8.2 prompt-toolkit: 3.0.29 psutil: 5.9.0 ptyprocess: 0.7.0 pycollada: 0.7.2 pydicom: 2.2.2 Pygments: 2.11.2 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.0 PyQt6-Qt6: 6.3.0 PyQt6-sip: 13.3.1 PyQt6-WebEngine-commercial: 6.3.0 PyQt6-WebEngine-Qt6: 6.3.0 python-dateutil: 2.8.2 pytz: 2022.1 pyzmq: 23.1.0 qtconsole: 5.3.0 QtPy: 2.1.0 RandomWords: 0.3.0 requests: 2.27.1 scipy: 1.7.3 setuptools: 59.8.0 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.3.2 sphinx-autodoc-typehints: 1.15.2 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-community: 1.0.0 tables: 3.7.0 tifffile: 2021.11.2 tinyarray: 1.2.4 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.9 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.1 wheel-filename: 1.3.0 }}} " defect closed normal Graphics nonchimerax all ChimeraX