id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 6868 glClear access violation trevor.sewell@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.18363 ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Windows fatal exception: access violation Current thread 0x00008cb4 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py"", line 1166 in draw_background File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\camera.py"", line 184 in draw_background File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py"", line 215 in _draw_scene File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py"", line 165 in draw File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\updateloop.py"", line 73 in draw_new_frame File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\updateloop.py"", line 139 in _redraw_timer_callback File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py"", line 111 in make_current File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py"", line 490 in make_current File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\statusbar.py"", line 143 in status File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\statusbar.py"", line 84 in _expose_event File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py"", line 2184 in _release File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py"", line 2164 in delete File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py"", line 1895 in _mask_framebuffer File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py"", line 1837 in set_outline_mask File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py"", line 237 in _draw_scene File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py"", line 165 in draw File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py"", line 465 in image_rgba File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py"", line 415 in image File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\filehistory.py"", line 231 in models_image File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\filehistory.py"", line 173 in capture_image File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\filehistory.py"", line 85 in capture_thumbnails_cb File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\filehistory.py"", line 68 in remember_file File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\filehistory.py"", line 224 in remember_file File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\session.py"", line 914 in save File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core_formats\__init__.py"", line 84 in save File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\cmd.py"", line 89 in provider_save File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2856 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\cmd.py"", line 75 in cmd_save File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2856 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py"", line 36 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\dialog.py"", line 51 in display File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\dialog.py"", line 127 in show_save_file_dialog File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\dialog.py"", line 116 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: access violation Current thread 0x00008cb4 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py"", line 111 in make_current File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py"", line 490 in make_current File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\statusbar.py"", line 143 in status File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\statusbar.py"", line 84 in _expose_event File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py"", line 2184 in _release File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py"", line 2164 in delete File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py"", line 1895 in _mask_framebuffer File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py"", line 1837 in set_outline_mask File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py"", line 237 in _draw_scene File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py"", line 165 in draw File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py"", line 465 in image_rgba File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py"", line 415 in image File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\filehistory.py"", line 231 in models_image File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\filehistory.py"", line 173 in capture_image File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\filehistory.py"", line 85 in capture_thumbnails_cb File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\filehistory.py"", line 68 in remember_file File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\filehistory.py"", line 224 in remember_file File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\session.py"", line 914 in save File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core_formats\__init__.py"", line 84 in save File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\cmd.py"", line 89 in provider_save File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2856 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\cmd.py"", line 75 in cmd_save File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2856 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py"", line 36 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\dialog.py"", line 51 in display File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\dialog.py"", line 127 in show_save_file_dialog File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\save_command\dialog.py"", line 116 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main ===== Log before crash start ===== UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > D:/CynD-Q86R/All_chains/RealSpaceRefine_3/Q86R-corrected_model1-coot-2.pdb Chain information for Q86R-corrected_model1-coot-2.pdb #1 --- Chain | Description A B C D E F G H I J K L M N O P Q R | No description available > addh Summary of feedback from adding hydrogens to Q86R-corrected_model1-coot-2.pdb #1 --- notes | No usable SEQRES records for Q86R-corrected_model1-coot-2.pdb (#1) chain A; guessing termini instead No usable SEQRES records for Q86R-corrected_model1-coot-2.pdb (#1) chain B; guessing termini instead No usable SEQRES records for Q86R-corrected_model1-coot-2.pdb (#1) chain C; guessing termini instead No usable SEQRES records for Q86R-corrected_model1-coot-2.pdb (#1) chain D; guessing termini instead No usable SEQRES records for Q86R-corrected_model1-coot-2.pdb (#1) chain E; guessing termini instead 13 messages similar to the above omitted Chain-initial residues that are actual N termini: /A SER 3, /B SER 3, /C SER 3, /D SER 3, /E SER 3, /F SER 3, /G SER 3, /H SER 3, /I SER 3, /J SER 3, /K SER 3, /L SER 3, /M SER 3, /N SER 3, /O SER 3, /P SER 3, /Q SER 3, /R SER 3 Chain-initial residues that are not actual N termini: Chain-final residues that are actual C termini: Chain-final residues that are not actual C termini: /A ILE 319, /B ILE 319, /C ILE 319, /D ILE 319, /E ILE 319, /F ILE 319, /G ILE 319, /H ILE 319, /I ILE 319, /J ILE 319, /K ILE 319, /L ILE 319, /M ILE 319, /N ILE 319, /O ILE 319, /P ILE 319, /Q ILE 319, /R ILE 319 3654 hydrogen bonds /A ILE 319 is not terminus, removing H atom from 'C' /B ILE 319 is not terminus, removing H atom from 'C' /C ILE 319 is not terminus, removing H atom from 'C' /D ILE 319 is not terminus, removing H atom from 'C' /E ILE 319 is not terminus, removing H atom from 'C' 13 messages similar to the above omitted 43758 hydrogens added > style stick Changed 89172 atom styles > style stick Changed 89172 atom styles > select :80-90, 65-70 5490 atoms, 5526 bonds, 306 residues, 1 model selected > open D:/CynD-Q86R/All_chains/Map4_D1_3_15.mrc Opened Map4_D1_3_15.mrc as #2, grid size 300,300,300, pixel 1.05, shown at level 0.0246, step 2, values float32 > volume #2 step 1 > volume #2 style mesh > ui tool show ISOLDE > set selectionWidth 4 WARNING: no OpenCL or compatible CUDA drivers detected! While it is theoretically possible to run ISOLDE using CPU only, in practice it is prohibitively slow. If you have a suitable GPU in your machine, please check that you have the recommended drivers from the manufacturer installed. The current required CUDA version is 10.1 - if installed, please make sure this is on your library path before starting ChimeraX. ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side chains... ISOLDE: Corrected atom nomenclature of 774 residues in model #1 to IUPAC-IUB standards. Chain information for Q86R-corrected_model1-coot-2.pdb --- Chain | Description 1.2/A 1.2/B 1.2/C 1.2/D 1.2/E 1.2/F 1.2/G 1.2/H 1.2/I 1.2/J 1.2/K 1.2/L 1.2/M 1.2/N 1.2/O 1.2/P 1.2/Q 1.2/R | No description available Cached rota8000-val data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-leu data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-ile data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-pro data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-phe data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-tyr data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-trp data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-ser data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-thr data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-cys data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-met data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-lys data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-his data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-arg data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-asp data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-asn data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-gln data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Cached rota8000-glu data not found. Regenerating from text file. This is normal if running ISOLDE for the first time Done loading forcefield Opened Map4_D1_3_15.mrc as #1.1.1.1, grid size 300,300,300, pixel 1.05, shown at step 1, values float32 > clipper spotlight radius 13.00 > clipper spotlight radius 14.00 > clipper spotlight radius 15.00 > clipper spotlight radius 16.00 > clipper spotlight radius 17.00 > clipper spotlight radius 18.00 > clipper spotlight radius 19.00 > clipper spotlight radius 20.00 > clipper spotlight radius 21.00 > clipper spotlight radius 22.00 > clipper spotlight radius 23.00 > clipper spotlight radius 24.00 > clipper spotlight radius 25.00 > clipper spotlight radius 26.00 > volume #1.1.1.1 level 0.02929 ISOLDE: started sim ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side chains... ISOLDE: Corrected atom nomenclature of 46 residues in model #1.2 to IUPAC-IUB standards. ISOLDE: stopped sim > save ""D:/CynD-Q86R/All_chains/Q86R refinement.cxs"" An error occurred in drawing the scene. Redrawing graphics is now stopped to avoid a continuous stream of error messages. To restart graphics use the command ""graphics restart"" after changing the settings that caused the error. exception: access violation reading 0x0000000000000008 Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\updateloop.py"", line 73, in draw_new_frame view.draw(check_for_changes = False) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\view.py"", line 165, in draw self._draw_scene(camera, drawings) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\view.py"", line 215, in _draw_scene camera.draw_background(vnum, r) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\camera.py"", line 184, in draw_background render.draw_background() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1166, in draw_background GL.glClear(flags) OSError: exception: access violation reading 0x0000000000000008 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 3.3.0 OpenGL renderer: Quadro FX 580/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: System manufacturer Model: System Product Name OS: Microsoft Windows 10 Enterprise (Build 18363) Memory: 34,300,129,280 MaxProcessMemory: 137,438,953,344 CPU: 12 Intel(R) Core(TM) i7-3930K CPU @ 3.20GHz OSLanguage: en-US Locale: ('en_ZA', 'cp1252') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.10.8 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-Clipper: 0.17.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.3 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 comtypes: 1.1.10 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.3 ParmEd: 3.2.0 parso: 0.8.3 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pywin32: 228 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 WMI: 1.5.1 }}} " defect closed normal Graphics can't reproduce Tristan Croll all ChimeraX