id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 6840 Crash using File→Open dialog on Windows and/or returning from function wegner@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.19044 ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. I did the same thing as yesterday. Yesterday it worked, now it crushed several times, seems to be a problem with matchmaker. When opening the first model the mathmaker window closes. After reopening it the model is listed in the matchmaker window. When I try to open a second model Chimera crashes reproducible. I checked for windows updates, installed them but the problem is still there. Windows fatal exception: code 0x8001010d Current thread 0x000042a8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000042a8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 135 in show_open_file_dialog File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000042a8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 135 in show_open_file_dialog File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in eveWindows fatal exception: code 0xnt_loop 8001010e File ""C:\Program Files\Windows fatal exception: code 0xChim8001010e eraX 1.3\bin\lib\site-packages\ChimeraX_main.py""Windows fatal exception: code 0x8001010e, line 867 in init Windows fatal exception: code 0x File ""8001010e C:\PWindows fatal exception: code 0xrogram8001010e FilesWindows fatal exception: code 0x\Chime8001010e raX 1.Windows fatal exception: code 0x3\bin\li8001010e b\site-packaWindows fatal exception: code 0xges\Chim8001010e eraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChWindows fatal exception: code 0x8001010e imeraX 1.3\bin\lib\runpy.py"", line 197Windows fatal exception: code 0x8001010e in Windows fatal exception: code 0x8001010e_run_module_as_main Thread 0x000042a8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_commWindows fatal exception: code 0x8001010e and\dialog.py""Windows fatal exception: code 0x8001010e , line 135 in Windows fatal exception: code 0x8001010e shWindows fatal exception: code 0x8001010e owWindows fatal exception: code 0x8001010e _oWindows fatal exception: code 0x8001010e pen_file_dialog File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py""Windows fatal exception: code 0x, line 301 in e8001010e vent_loop Windows fatal exception: code 0x File ""C:\Pro8001010e gram FWindows fatal exception: code 0x8001010e iles\ChiWindows fatal exception: code 0xmeraX 1.3\bin\lib\si8001010e te-pWindows fatal exception: code 0xac8001010e kages\ChimeraX_mainWindows fatal exception: code 0x.py""8001010e , line 867 in iWindows fatal exception: code 0xnit File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX8001010e_main.py"" , line 1018 in File ""C:\PrograWindows fatal exception: code 0x8001010e m Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000042a8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 135 in Windows fatal exception: code 0xshow_open_file_dialog 8001010e File ""Windows fatal exception: code 0xC:\Program Files8001010e \CWindows fatal exception: code 0x8001010e himeraX 1.3\bin\lib\site-packages\chimeraWindows fatal exception: code 0x8001010e x\open_Windows fatal exception: code 0x8001010e cWindows fatal exception: code 0x8001010eommand\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-Windows fatal exception: code 0xpackages8001010e \chimerax\uiWindows fatal exception: code 0x\gui.py""8001010e , line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py""Windows fatal exception: code 0x8001010e , line Windows fatal exception: code 0x8001010e 867Windows fatal exception: code 0x8001010e in Windows fatal exception: code 0x8001010e iWindows fatal exception: code 0x8001010e nWindows fatal exception: code 0x8001010e iWindows fatal exception: code 0x8001010e tWindows fatal exception: code 0x8001010e File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000042a8 (most recent call first): File ""C:\Program FWindows fatal exception: code 0xiles\Chime8001010e raX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 135 in show_open_file_dialog File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3\bin\liWindows fatal exception: code 0x8001010e b\site-packages\chiWindows fatal exception: code 0xmerax\ui8001010e \gWindows fatal exception: code 0xui.py""8001010e , line 301Windows fatal exception: code 0x in event8001010e _loop Windows fatal exception: code 0x File ""8001010e C:\PWindows fatal exception: code 0xrogram Files\Chimera8001010e Windows fatal exception: code 0x8001010e X 1.3\bin\lib\site-packages\ChimeraX_main.py""Windows fatal exception: code 0x8001010e , line 867 in init Windows fatal exception: code 0x8001010e File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py""Windows fatal exception: code 0x, line 1018 in File ""C:\Program Files\Chim8001010e eraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\ProWindows fatal exception: grcode 0xam Files\Chi8001010e meraX Windows fatal exception: code 0x1.8001010e 3\biWindows fatal exception: code 0xn\8001010e lib\runpy.pyWindows fatal exception: code 0x"", line 8001010e 197 in Windows fatal exception: code 0x8001010e _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000042a8 (most recent call first): File Windows fatal exception: code 0x""C8001010e :\Program Files\ChWindows fatal exception: code 0ximer8001010e aX 1.3\bin\liWindows fatal exception: code 0xb\site8001010e -pWindows fatal exception: code 0xackages\c8001010e hWindows fatal exception: code 0ximerax\open_8001010e command\dialog.py""Windows fatal exception: , line code 0x8001010e 135 in Windows fatal exception: code 0xshow_ope8001010e n_file_dialog Windows fatal exception: code 0x8001010e File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000042a8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 135 in show_open_file_dialog File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000042a8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 135 in show_open_file_dialog Windows fatal exception: code 0x File ""C:\Program Files\ChimeraX 1.3\bin\8001010e lib\site-packages\chimerax\open_command\dialog.pyWindows fatal exception: code 0x8001010e "", line 107Windows fatal exception: code 0x in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chWindows fatal exception: code 0x8001010e iWindows fatal exception: meracode 0x8001010e xWindows fatal exception: code 0x8001010e Windows fatal exception: Windows fatal exception: \ui\gui.py"", line 301 in code 0xevcode 0x8001010e Windows fatal exception: code 0xent_loop8001010e Windows fatal exception: code 0x8001010e File Windows fatal exception: 8001010e Windows fatal exception: code 0x""8001010eC :\Windows fatal exception: Pcode 0xroWindows fatal exception: Windows fatal exception: code 0x8001010e grWindows fatal exception: am Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Procode 0x8001010e code 0x8001010e code 0x8001010e Windows fatal exception: Windows fatal exception: code 0xWindows fatal exception: code 0x8001010e code 0x8001010e 8001010eWindows fatal exception: code 0x Windows fatal exception: code 0x8001010eWindows fatal exception: 8001010ecode 0x8001010e gram Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"" 8001010eWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e , line Windows fatal exception: code 0x8001010eWindows fatal exception: code 0xWindows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e8001010e Windows fatal exception: code 0x10188001010e in Windows fatal exception: code 0x8001010e File ""C:\ProWindows fatal exception: code 0x8001010e gramWindows fatal exception: FilWindows fatal exception: code 0x8001010e eWindows fatal exception: code 0xcode 0x8001010e sWindows fatal exception: code 0x8001010e8001010e \Windows fatal exception: code 0x 8001010e CWindows fatal exception: code 0xWindows fatal exception: 8001010e hWindows fatal exception: code 0xcode 0x8001010e iWindows fatal exception: code 0x8001010e8001010e mWindows fatal exception: code 0x 8001010e eWindows fatal exception: code 0x8001010e raX 1.3\bin\lib\runpy.py"", line 87 in _ruWindows fatal exception: code 0x8001010en _Windows fatal exception: Windows fatal exception: code 0xc8001010e code 0xWindows fatal exception: code 0xo8001010e 8001010eWindows fatal exception: code 0xd8001010e Windows fatal exception: code 0x8001010eWindows fatal exception: code 0xe8001010e Windows fatal exception: code 0x 8001010e Windows fatal exception: Windows fatal exception: code 0x File 8001010e code 0xWindows fatal exception: code 0x""8001010e 8001010e C:\Windows fatal exception: code 0xWindows fatal exception: code 0x8001010e 8001010e PWindows fatal exception: code 0x8001010e rogram Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0xWindows fatal exception: code 0x8001010e 8001010eThread 0x000042a8 (most recent call first): File ""Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010eWindows fatal exception: code 0xC8001010e Windows fatal exception: code 0xWindows fatal exception: code 0x:8001010e 8001010eWindows fatal exception: code 0x\8001010e Windows fatal exception: code 0x8001010eWindows fatal exception: code 0xP8001010e rWindows fatal exception: code 0x8001010e oWindows fatal exception: code 0x 8001010e Windows fatal exception: Windows fatal exception: code 0xg8001010e code 0xWindows fatal exception: code 0xr8001010e 8001010e am Files\ChimeraX 1.3\bin\lib\siWindows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e te-pacWindows fatal exception: kaWindows fatal exception: code 0x8001010e gWindows fatal exception: code 0xcode 0x8001010e eWindows fatal exception: code 0x8001010e8001010e sWindows fatal exception: code 0x 8001010e \Windows fatal exception: chWindows fatal exception: imcode 0xerax\open_command\dialog.py"", line 135 in show_open_file_dialog File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-8001010e code 0x8001010eWindows fatal exception: code 0x8001010eWindows fatal exception: code 0xp8001010e Windows fatal exception: code 0x8001010eWindows fatal exception: code 0xa8001010e Windows fatal exception: code 0x8001010eWindows fatal exception: code 0xc8001010e Windows fatal exception: code 0x8001010e kageWindows fatal exception: code 0x8001010e s\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000042a8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 135 in show_open_file_dialog File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000042a8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 135 in show_open_file_dialog File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000042a8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 135 in show_open_file_dialog File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000042a8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 135 in show_open_file_dialog File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000042a8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 135 in show_open_file_dialog File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000042a8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 135 in show_open_file_dialog File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000042a8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 135 in show_open_file_dialog File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: access violation Thread 0x00002710 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\threading.py"", line 316 in wait File ""C:\Program Files\ChimeraX 1.3\bin\lib\threading.py"", line 574 in wait File ""C:\Program Files\ChimeraX 1.3\bin\lib\threading.py"", line 1284 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3\bin\lib\threading.py"", line 930 in _bootstrap Current thread 0x000042a8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main ===== Log before crash start ===== UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""C:/DA/Sequenzen/TAST/Alpha > fold/S17P/S17P_35b05_unrelaxed_model_2_rank_1.pdb"" Chain information for S17P_35b05_unrelaxed_model_2_rank_1.pdb #1 --- Chain | Description B C | No description available > set bgColor white > save C:/ProgramData/ChimeraX/S17P.cxs > close session > open ""C:/DA/Sequenzen/TAST/Alpha > fold/T38V/T38V_196ba_unrelaxed_model_2_rank_1.pdb"" Chain information for T38V_196ba_unrelaxed_model_2_rank_1.pdb #1 --- Chain | Description B C | No description available > save C:/ProgramData/ChimeraX/T38V.cxs > close session > open ""C:/DA/Sequenzen/TAST/Alpha > fold/Y47T/Y47T_49319_unrelaxed_model_2_rank_1.pdb"" Chain information for Y47T_49319_unrelaxed_model_2_rank_1.pdb #1 --- Chain | Description B C | No description available > save C:/ProgramData/ChimeraX/Y47T.cxs > close session > open ""C:/DA/Sequenzen/TAST/Alpha > fold/N70E/N70E_17dc1_unrelaxed_model_2_rank_1.pdb"" Chain information for N70E_17dc1_unrelaxed_model_2_rank_1.pdb #1 --- Chain | Description B C | No description available > save C:/ProgramData/ChimeraX/N70E.cxs > close session > open ""C:/DA/Sequenzen/TAST/Alpha > fold/S17PN70E/S17PN70E_a61b6_unrelaxed_model_2_rank_1.pdb"" Chain information for S17PN70E_a61b6_unrelaxed_model_2_rank_1.pdb #1 --- Chain | Description B C | No description available > save C:/ProgramData/ChimeraX/S17PN70E.cxs > close session > open ""C:/DA/Sequenzen/TAST/Alpha > fold/S17PT38V/S17PT38V_2722b_unrelaxed_model_2_rank_1.pdb"" Chain information for S17PT38V_2722b_unrelaxed_model_2_rank_1.pdb #1 --- Chain | Description B C | No description available > save C:/ProgramData/ChimeraX/S17PT38V.cxs > close session > open ""C:/DA/Sequenzen/TAST/Alpha > fold/S17PT38VN70E/S17PT38VN70E_6a474_unrelaxed_model_2_rank_1.pdb"" Chain information for S17PT38VN70E_6a474_unrelaxed_model_2_rank_1.pdb #1 --- Chain | Description B C | No description available > save C:/ProgramData/ChimeraX/S17PT38VN70E.cxs > close session > open ""C:/DA/Sequenzen/TAST/Alpha > fold/S17PT38VY47T/S17PT38VY47T_e98fa_unrelaxed_model_3_rank_1.pdb"" Chain information for S17PT38VY47T_e98fa_unrelaxed_model_3_rank_1.pdb #1 --- Chain | Description B C | No description available > save C:/ProgramData/ChimeraX/S17PT38VY47T.cxs > close session > open ""C:/DA/Sequenzen/TAST/Alpha > fold/S17PY47T/S17PY47T_3f4c3_unrelaxed_model_3_rank_1.pdb"" Chain information for S17PY47T_3f4c3_unrelaxed_model_3_rank_1.pdb #1 --- Chain | Description B C | No description available > save C:/ProgramData/ChimeraX/S17PY47T.cxs > close session > open ""C:/DA/Sequenzen/TAST/Alpha > fold/S17PY47TN70E/S17PY47TN70E_93148_unrelaxed_model_3_rank_1.pdb"" Chain information for S17PY47TN70E_93148_unrelaxed_model_3_rank_1.pdb #1 --- Chain | Description B C | No description available > save C:/ProgramData/ChimeraX/S17PY47TN70E.cxs > close session > open ""C:/DA/Sequenzen/TAST/Alpha > fold/T38VN70E/T38VN70E_263e1_unrelaxed_model_2_rank_1.pdb"" Chain information for T38VN70E_263e1_unrelaxed_model_2_rank_1.pdb #1 --- Chain | Description B C | No description available > save C:/ProgramData/ChimeraX/T38VN70E.cxs > close session > open ""C:/DA/Sequenzen/TAST/Alpha > fold/T38VY47T/T38VY47T_279ee_unrelaxed_model_2_rank_1.pdb"" Chain information for T38VY47T_279ee_unrelaxed_model_2_rank_1.pdb #1 --- Chain | Description B C | No description available > save C:/ProgramData/ChimeraX/T38VY47T.cxs > close session > open ""C:/DA/Sequenzen/TAST/Alpha > fold/T38VY47TN70E/T38VY47TN70E_2efd7_unrelaxed_model_2_rank_1.pdb"" Chain information for T38VY47TN70E_2efd7_unrelaxed_model_2_rank_1.pdb #1 --- Chain | Description B C | No description available > save C:/ProgramData/ChimeraX/T38VY47TN70E.cxs > close session > open ""C:/DA/Sequenzen/TAST/Alpha > fold/Y47TN70E/Y47TN70E_9a671_unrelaxed_model_2_rank_1.pdb"" Chain information for Y47TN70E_9a671_unrelaxed_model_2_rank_1.pdb #1 --- Chain | Description B C | No description available > save C:/ProgramData/ChimeraX/Y47TN70E.cxs > close session > open C:\DA\pdb\TAST\6k8h.pdb\6k8h.pdb format pdb Non-standard residues in 6k8h.pdb #1 --- PLR — (5-hydroxy-4,6-dimethylpyridin-3-yl)methyl dihydrogenphosphate (4'-deoxypyridoxine phosphate) > select :HOH 1031 atoms, 1031 residues, 1 model selected > hide sel atoms > select /A:9-446 3290 atoms, 3364 bonds, 438 residues, 1 model selected > hide sel atoms > select /B:8-448 3315 atoms, 3389 bonds, 441 residues, 1 model selected > hide sel atoms > select :PLR 30 atoms, 30 bonds, 2 residues, 1 model selected > hide sel atoms > save C:/ProgramData/ChimeraX/6k8h_sauber.cxs > close session > ui tool show Matchmaker > open C:\ProgramData\ChimeraX\6k8h_sauber.cxs format session opened ChimeraX session > ui tool show Matchmaker > open C:/ProgramData/ChimeraX/S17P.cxs opened ChimeraX session ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 3.3.14761 Core Profile Forward-Compatible Context 21.30.44.10 30.0.13044.10001 OpenGL renderer: AMD Radeon(TM) Graphics OpenGL vendor: ATI Technologies Inc. Manufacturer: ASUSTeK COMPUTER INC. Model: Vivobook_ASUSLaptop M3500QA_M3500QA OS: Microsoft Windows 10 Home (Build 19044) Memory: 16,542,011,392 MaxProcessMemory: 137,438,953,344 CPU: 16 AMD Ryzen 7 5800H with Radeon Graphics OSLanguage: de-DE Locale: ('de_DE', 'cp1252') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.10.8 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 comtypes: 1.1.10 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.3 ParmEd: 3.2.0 parso: 0.8.3 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pywin32: 228 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 WMI: 1.5.1 }}} " defect feedback normal Platform Tom Goddard all ChimeraX