id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 6671 2D arrows problems chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.22000 ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open C:/Users/ZHANGHJ/Desktop/SPEN1-2040/SPEN1-2040~/SPEN1-2040/ranked_0.pdb Chain information for ranked_0.pdb #1 --- Chain | Description A | No description available > style stick Changed 31518 atom styles > style stick Changed 31518 atom styles > style stick Changed 31518 atom styles > background write Unknown command: background write > background solid write Unknown command: background solid write > ui tool show ""Color Actions"" > set bgColor white > color byhetero > show cartoons > hide cartoons > show cartoons > show surfaces [Repeated 1 time(s)] > hide surfaces > show surfaces > hide surfaces > show atoms [Repeated 1 time(s)] > hide atoms > style stick Changed 31518 atom styles > rainbow > select #0:1-1610 Nothing selected > select #0:1-1610.A Expected an objects specifier or a keyword > select sequence 1-1610 Nothing selected > view clip false [Repeated 3 time(s)] > show target m > view #1 clip false [Repeated 1 time(s)] > show #!1 target m > view #1 clip false > hide #!1 target m > show #!1 target m > log metadata #1 No models had metadata > log chains #1 Chain information for ranked_0.pdb #1 --- Chain | Description A | No description available > view orient [Repeated 1 time(s)] > view > ui tool show ""Model Panel"" [Repeated 1 time(s)] > log metadata #1 No models had metadata > log chains #1 Chain information for ranked_0.pdb #1 --- Chain | Description A | No description available > ui tool show AlphaFold > select #1:1-1610.A Expected an objects specifier or a keyword > select #1:1-1610.A Expected an objects specifier or a keyword > select #1 31518 atoms, 31816 bonds, 1980 residues, 1 model selected > ~select #1 1 model selected > alphafold predict #1 > ui tool show ViewDockX No suitable models found for ViewDockX > ui mousemode right select [Repeated 1 time(s)] > ui mousemode right zoom > ui mousemode right select > select /A:1 19 atoms, 18 bonds, 1 residue, 1 model selected > select clear Drag select of 5 residues > select clear > ui windowfill toggle > toolshed show > ui windowfill toggle > select 31518 atoms, 31816 bonds, 1980 residues, 1 model selected > ui dockable true ""Help Viewer"" > ui dockable false ""Help Viewer"" > select spec Expected an objects specifier or a keyword > select spec #1:1-1640.A Expected an objects specifier or a keyword > select spec #1:1-1640/A Expected an objects specifier or a keyword > close > open 2bbv Summary of feedback from opening 2bbv fetched from pdb --- notes | Fetching compressed mmCIF 2bbv from http://files.rcsb.org/download/2bbv.cif Fetching CCD CA from http://ligand-expo.rcsb.org/reports/C/CA/CA.cif 2bbv title: The refined three-dimensional structure of an insect virus At 2.8 angstroms resolution [more info...] Chain information for 2bbv #1 --- Chain | Description | UniProt A B C | protein (black beetle virus capsid protein) | COAT_BBV D E F | protein (black beetle virus capsid protein) | COAT_BBV N | RNA (5'-R(*up*CP*up*up*ap*up*ap*up*CP*U)-3') | Non-standard residues in 2bbv #1 --- CA — calcium ion 2bbv mmCIF Assemblies --- 1| complete icosahedral assembly 2| icosahedral asymmetric unit 3| icosahedral pentamer 4| icosahedral 23 hexamer 5| icosahedral asymmetric unit, std point frame 6| crystal asymmetric unit, crystal frame > color bychain > open 2bbv 2bbv title: The refined three-dimensional structure of an insect virus At 2.8 angstroms resolution [more info...] Chain information for 2bbv #2 --- Chain | Description | UniProt A B C | protein (black beetle virus capsid protein) | COAT_BBV D E F | protein (black beetle virus capsid protein) | COAT_BBV N | RNA (5'-R(*up*CP*up*up*ap*up*ap*up*CP*U)-3') | Non-standard residues in 2bbv #2 --- CA — calcium ion 2bbv mmCIF Assemblies --- 1| complete icosahedral assembly 2| icosahedral asymmetric unit 3| icosahedral pentamer 4| icosahedral 23 hexamer 5| icosahedral asymmetric unit, std point frame 6| crystal asymmetric unit, crystal frame > color bychain > lighting full > lighting shadows false > lighting flat > lighting full > lighting soft > lighting simple > lighting soft > lighting full > style /b stick Changed 4764 atom styles > help select > color /n teal [Repeated 1 time(s)] > ui tool show ""Color Actions"" > ribbon /c [Repeated 12 time(s)] > ribbon /C > ribbon /c [Repeated 4 time(s)] > select /c 4946 atoms, 4938 bonds, 12 pseudobonds, 776 residues, 6 models selected > show sel cartoons > hide sel atoms > ~select /c Nothing selected > ~select /c Nothing selected > select /N:4@C5' 2 atoms, 2 residues, 2 models selected > select up 40 atoms, 42 bonds, 2 residues, 2 models selected > color sel gold > select clear > color sel gold > select clear Drag select of 48 atoms, 6 bonds > select clear > suface #1 Unknown command: suface #1 > surface #1 > surface #1 > color /n fromatoms > style solvent sphere Changed 416 atom styles > style solvent sphere Changed 416 atom styles > color solvent red > sym #1 2bbv mmCIF Assemblies --- 1| complete icosahedral assembly| 60 copies of chains A-F,N 2| icosahedral asymmetric unit| 1 copy of chains A-F,N 3| icosahedral pentamer| 5 copies of chains A-F,N 4| icosahedral 23 hexamer| 6 copies of chains A-F,N 5| icosahedral asymmetric unit, std point frame| 1 copy of chains A-F,N 6| crystal asymmetric unit, crystal frame| 5 copies of chains A-F,N > hide #!1 models > hide #!2 models > show #!2 models > show #!1 models > sym #1 assembly 3 newModel false copies false > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > view > set silhouettes true > movie record > turn y 2 180 > wait 180 > movie encode C:\Users\ZHANGHJ\Desktop\movie3.mp4 Movie saved to \C:Users\\...\Desktop\movie3.mp4 > ui tool show ""Volume Viewer"" > ui tool show Updates > savepos P1 Unknown command: savepos P1 > save position P1 Cannot determine format for 'position' > ui tool show ""Side View"" > ui tool show ""Command Line Interface"" > select sequence 1-1610 Nothing selected > ui tool show ""Color Zone"" > ui tool show ""Fit in Map"" > movie record > turn y 2 180 > wait 180 > movie encode C:\Users\ZHANGHJ\Desktop\movie4.mp4 Movie saved to \C:Users\\...\Desktop\movie4.mp4 > set bgColor gray > set silhouettes true > set bgColor gray > set silhouettes true > set silhouettes flase Invalid ""silhouettes"" argument: Expected true or false (or 1 or 0) > set silhouettes false > set silhouettes Missing ""silhouettes"" keyword's argument > set silhouettes ture Invalid ""silhouettes"" argument: Expected true or false (or 1 or 0) > set silhouettes true > open 1grl Fetching url http://files.rcsb.org/download/1grl.cif failed: > open 1grl Fetching url http://files.rcsb.org/download/1grl.cif failed: > open 1grl Fetching url http://files.rcsb.org/download/1grl.cif failed: > open 1grl Summary of feedback from opening 1grl fetched from pdb --- note | Fetching compressed mmCIF 1grl from http://files.rcsb.org/download/1grl.cif 1grl title: The crystal structure of the bacterial chaperonin groel At 2.8 angstroms [more info...] Chain information for 1grl #3 --- Chain | Description | UniProt A B C D E F G | groel (HSP60 class) | CH60_ECOLI 1grl mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| software_defined_assembly > hide #!1 models > hide #!2 models > lighting simple > lighting default [Repeated 1 time(s)] > show #!2 models > hide #!2 models > show #!1 models > hide #!1 models > show #!1 models > hide #!3 models > show #!3 models > select #3 29274 atoms, 29001 bonds, 441 pseudobonds, 3626 residues, 2 models selected > ~select #3 Nothing selected > show #!2 models > select #1 7817 atoms, 7813 bonds, 17 pseudobonds, 1208 residues, 3 models selected > select #2 7817 atoms, 7813 bonds, 17 pseudobonds, 1208 residues, 3 models selected > ~select #2 Nothing selected > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > ui mousemode right ""move picked models"" > view matrix models #1,1,0,0,7.9987,0,1,0,-0.39368,0,0,1,-22.596 > ui mousemode right ""move picked models"" > undo > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > open 1grl 1grl title: The crystal structure of the bacterial chaperonin groel At 2.8 angstroms [more info...] Chain information for 1grl #4 --- Chain | Description | UniProt A B C D E F G | groel (HSP60 class) | CH60_ECOLI 1grl mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| software_defined_assembly > hide #!4 models > show #!4 models > hide #!4 models > hide #!3 models > show #!4 models > hide #!4 models > show #!4 models > show #!3 models > sym #1 2bbv mmCIF Assemblies --- 1| complete icosahedral assembly| 60 copies of chains A-F,N 2| icosahedral asymmetric unit| 1 copy of chains A-F,N 3| icosahedral pentamer| 5 copies of chains A-F,N 4| icosahedral 23 hexamer| 6 copies of chains A-F,N 5| icosahedral asymmetric unit, std point frame| 1 copy of chains A-F,N 6| crystal asymmetric unit, crystal frame| 5 copies of chains A-F,N > sym #1 assembly 3 newModel false copies false > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > close #4 > ui mousemode right ""translate selected models"" > select #1 7817 atoms, 7813 bonds, 17 pseudobonds, 1208 residues, 3 models selected > select #2 7817 atoms, 7813 bonds, 17 pseudobonds, 1208 residues, 3 models selected > select #1 7817 atoms, 7813 bonds, 17 pseudobonds, 1208 residues, 3 models selected > select #2 7817 atoms, 7813 bonds, 17 pseudobonds, 1208 residues, 3 models selected > select #1 7817 atoms, 7813 bonds, 17 pseudobonds, 1208 residues, 3 models selected > select #2 7817 atoms, 7813 bonds, 17 pseudobonds, 1208 residues, 3 models selected > ui mousemode right select Drag select of 2bbv_A SES surface, 2bbv_A SES surface, 2bbv_A SES surface, 2bbv_A SES surface, 2bbv_A SES surface, 2bbv_B SES surface, 2bbv_B SES surface, 2bbv_B SES surface, 2bbv_B SES surface, 175211 of 246160 triangles, 2bbv_B SES surface, 2bbv_C SES surface, 2bbv_C SES surface, 2bbv_C SES surface, 2bbv_C SES surface, 241845 of 259048 triangles, 2bbv_C SES surface, 149625 of 259048 triangles, 2bbv_D SES surface, 2bbv_D SES surface, 2bbv_D SES surface, 2bbv_D SES surface, 2bbv_D SES surface, 2bbv_E SES surface, 2bbv_E SES surface, 2bbv_E SES surface, 2bbv_E SES surface, 12278 of 22210 triangles, 2bbv_E SES surface, 2bbv_F SES surface, 2bbv_F SES surface, 2bbv_F SES surface, 2bbv_F SES surface, 2bbv_F SES surface, 9055 of 22508 triangles, 2bbv_N SES surface, 2bbv_N SES surface, 2bbv_N SES surface, 2bbv_N SES surface, 9924 of 34084 triangles, 2bbv_N SES surface, 570 of 34084 triangles, 30905 atoms, 1805 residues, 47 pseudobonds, 13560 bonds > select clear Drag select of 2bbv_A SES surface, 2bbv_A SES surface, 2bbv_A SES surface, 2bbv_A SES surface, 2bbv_A SES surface, 2bbv_B SES surface, 2bbv_B SES surface, 190754 of 246160 triangles, 2bbv_B SES surface, 2bbv_B SES surface, 2bbv_B SES surface, 2bbv_C SES surface, 2bbv_C SES surface, 242722 of 259048 triangles, 2bbv_C SES surface, 177074 of 259048 triangles, 2bbv_C SES surface, 2bbv_C SES surface, 2bbv_D SES surface, 2bbv_D SES surface, 2bbv_D SES surface, 2bbv_D SES surface, 2bbv_D SES surface, 2bbv_E SES surface, 2bbv_E SES surface, 11203 of 22210 triangles, 2bbv_E SES surface, 2bbv_E SES surface, 2bbv_E SES surface, 2bbv_F SES surface, 2bbv_F SES surface, 2bbv_F SES surface, 9613 of 22508 triangles, 2bbv_F SES surface, 2bbv_F SES surface, 2bbv_N SES surface, 2bbv_N SES surface, 5499 of 34084 triangles, 2bbv_N SES surface, 2bbv_N SES surface, 31027 atoms, 1847 residues, 46 pseudobonds, 13716 bonds > ui mousemode right ""translate selected models"" > view matrix models > #1,1,0,0,-16.69,0,1,0,-9.9657,0,0,1,-34.204,#2,1,0,0,-16.69,0,1,0,-9.9657,0,0,1,-34.204 > view matrix models > #1,1,0,0,-16.896,0,1,0,-9.9018,0,0,1,-33.963,#2,1,0,0,-16.896,0,1,0,-9.9018,0,0,1,-33.963 > ui mousemode right ""rotate selected models"" > view matrix models > #1,0.99973,0.0063419,0.02251,-8.2473,-0.0063517,0.99998,0.00036145,-19.109,-0.022507,-0.00050432,0.99975,-67.206,#2,0.99973,0.0063419,0.02251,-8.2473,-0.0063517,0.99998,0.00036145,-19.109,-0.022507,-0.00050432,0.99975,-67.206 > ui mousemode right ""translate selected models"" > view matrix models > #1,0.99973,0.0063419,0.02251,-2.4523,-0.0063517,0.99998,0.00036145,-14.279,-0.022507,-0.00050432,0.99975,-67.496,#2,0.99973,0.0063419,0.02251,-2.4523,-0.0063517,0.99998,0.00036145,-14.279,-0.022507,-0.00050432,0.99975,-67.496 > view matrix models > #1,0.99973,0.0063419,0.02251,-1.5095,-0.0063517,0.99998,0.00036145,-7.5074,-0.022507,-0.00050432,0.99975,-70.998,#2,0.99973,0.0063419,0.02251,-1.5095,-0.0063517,0.99998,0.00036145,-7.5074,-0.022507,-0.00050432,0.99975,-70.998 > view matrix models > #1,0.99973,0.0063419,0.02251,4.1536,-0.0063517,0.99998,0.00036145,-29.971,-0.022507,-0.00050432,0.99975,-55.591,#2,0.99973,0.0063419,0.02251,4.1536,-0.0063517,0.99998,0.00036145,-29.971,-0.022507,-0.00050432,0.99975,-55.591 > view matrix models > #1,0.99973,0.0063419,0.02251,-4.7739,-0.0063517,0.99998,0.00036145,-35.168,-0.022507,-0.00050432,0.99975,-56.44,#2,0.99973,0.0063419,0.02251,-4.7739,-0.0063517,0.99998,0.00036145,-35.168,-0.022507,-0.00050432,0.99975,-56.44 > view matrix models > #1,0.99973,0.0063419,0.02251,-5.1301,-0.0063517,0.99998,0.00036145,-38.096,-0.022507,-0.00050432,0.99975,-55.827,#2,0.99973,0.0063419,0.02251,-5.1301,-0.0063517,0.99998,0.00036145,-38.096,-0.022507,-0.00050432,0.99975,-55.827 > view matrix models > #1,0.99973,0.0063419,0.02251,65.346,-0.0063517,0.99998,0.00036145,-50.217,-0.022507,-0.00050432,0.99975,-41.509,#2,0.99973,0.0063419,0.02251,65.346,-0.0063517,0.99998,0.00036145,-50.217,-0.022507,-0.00050432,0.99975,-41.509 > view matrix models > #1,0.99973,0.0063419,0.02251,-14.926,-0.0063517,0.99998,0.00036145,-85.928,-0.022507,-0.00050432,0.99975,-46.469,#2,0.99973,0.0063419,0.02251,-14.926,-0.0063517,0.99998,0.00036145,-85.928,-0.022507,-0.00050432,0.99975,-46.469 > view matrix models > #1,0.99973,0.0063419,0.02251,-32.081,-0.0063517,0.99998,0.00036145,-74.309,-0.022507,-0.00050432,0.99975,-51.941,#2,0.99973,0.0063419,0.02251,-32.081,-0.0063517,0.99998,0.00036145,-74.309,-0.022507,-0.00050432,0.99975,-51.941 > ui mousemode right ""translate selected models"" [Repeated 1 time(s)] > view matrix models > #1,0.99973,0.0063419,0.02251,-33.396,-0.0063517,0.99998,0.00036145,-55.134,-0.022507,-0.00050432,0.99975,-56.551,#2,0.99973,0.0063419,0.02251,-33.396,-0.0063517,0.99998,0.00036145,-55.134,-0.022507,-0.00050432,0.99975,-56.551 > view matrix models > #1,0.99973,0.0063419,0.02251,-26.233,-0.0063517,0.99998,0.00036145,-88.93,-0.022507,-0.00050432,0.99975,-47.633,#2,0.99973,0.0063419,0.02251,-26.233,-0.0063517,0.99998,0.00036145,-88.93,-0.022507,-0.00050432,0.99975,-47.633 > view matrix models > #1,0.99973,0.0063419,0.02251,16.35,-0.0063517,0.99998,0.00036145,-109.57,-0.022507,-0.00050432,0.99975,-35.929,#2,0.99973,0.0063419,0.02251,16.35,-0.0063517,0.99998,0.00036145,-109.57,-0.022507,-0.00050432,0.99975,-35.929 > view matrix models > #1,0.99973,0.0063419,0.02251,-26.571,-0.0063517,0.99998,0.00036145,-58.99,-0.022507,-0.00050432,0.99975,-54.55,#2,0.99973,0.0063419,0.02251,-26.571,-0.0063517,0.99998,0.00036145,-58.99,-0.022507,-0.00050432,0.99975,-54.55 > view matrix models > #1,0.99973,0.0063419,0.02251,-65.934,-0.0063517,0.99998,0.00036145,-33.686,-0.022507,-0.00050432,0.99975,-66.795,#2,0.99973,0.0063419,0.02251,-65.934,-0.0063517,0.99998,0.00036145,-33.686,-0.022507,-0.00050432,0.99975,-66.795 > view matrix models > #1,0.99973,0.0063419,0.02251,-119.29,-0.0063517,0.99998,0.00036145,-6.2282,-0.022507,-0.00050432,0.99975,-81.825,#2,0.99973,0.0063419,0.02251,-119.29,-0.0063517,0.99998,0.00036145,-6.2282,-0.022507,-0.00050432,0.99975,-81.825 > view matrix models > #1,0.99973,0.0063419,0.02251,-97.133,-0.0063517,0.99998,0.00036145,-36.673,-0.022507,-0.00050432,0.99975,-71.219,#2,0.99973,0.0063419,0.02251,-97.133,-0.0063517,0.99998,0.00036145,-36.673,-0.022507,-0.00050432,0.99975,-71.219 > view matrix models > #1,0.99973,0.0063419,0.02251,-32.083,-0.0063517,0.99998,0.00036145,-55.243,-0.022507,-0.00050432,0.99975,-56.311,#2,0.99973,0.0063419,0.02251,-32.083,-0.0063517,0.99998,0.00036145,-55.243,-0.022507,-0.00050432,0.99975,-56.311 > view matrix models > #1,0.99973,0.0063419,0.02251,-19.417,-0.0063517,0.99998,0.00036145,-62.873,-0.022507,-0.00050432,0.99975,-52.488,#2,0.99973,0.0063419,0.02251,-19.417,-0.0063517,0.99998,0.00036145,-62.873,-0.022507,-0.00050432,0.99975,-52.488 > hide #!1 models > hide #!2 models > open 1080 fromDatabase emdb Fetching url ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-1080/map/emd_1080.map.gz failed: > open 1080 fromDatabase emdb Fetching url ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-1080/map/emd_1080.map.gz failed: > open 1080 fromDatabase emdb Fetching url ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-1080/map/emd_1080.map.gz failed: > open 1080 fromDatabase emdb Fetching url ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-1080/map/emd_1080.map.gz failed: > open C:/Users/ZHANGHJ/Downloads/emd_1080.map/emd_1080.map Opened emd_1080.map as #4, grid size 100,100,100, pixel 2.7, shown at level 1.68, step 1, values float32 > select #2 7817 atoms, 7813 bonds, 17 pseudobonds, 1208 residues, 3 models selected > select #1 7817 atoms, 7813 bonds, 17 pseudobonds, 1208 residues, 3 models selected > ~select #1 7 models selected > volume #4 level 0.9 > ui mousemode right ""contour level"" > volume #4 level 0.6887 > volume #4 level 0.7073 > volume #4 level 0.8351 > volume #4 level 0.7536 [Repeated 1 time(s)] > volume #4 level 0.7203 > volume #4 level 0.6962 > volume #4 level 0.6702 > volume #4 level 0.6294 > volume #4 level 0.5776 > volume #4 level 0.5257 > volume #4 level 0.5146 > volume #4 level 0.509 > volume #4 level 0.5479 > volume #4 level 0.635 > volume #4 level 0.7073 > volume #4 level 0.7795 > volume #4 level 0.8852 > volume #4 level 0.9371 > volume #4 level 0.9723 > volume #4 level 1.056 > volume #4 level 1.156 > volume #4 level 1.178 > volume #4 level 1.222 > volume #4 level 1.274 > volume #4 level 1.287 > volume #4 encloseVolume le6 step 1 color tan Invalid ""encloseVolume"" argument: Expected a number > volume #4 encloseVolume 1e6 step 1 color tan > ui mousemode right ""translate selected models"" > select #3 29274 atoms, 29001 bonds, 441 pseudobonds, 3626 residues, 2 models selected > view matrix models #3,1,0,0,7.9538,0,1,0,3.7366,0,0,1,67.133 > view matrix models #3,1,0,0,45.485,0,1,0,0.52117,0,0,1,71.098 > ui mousemode right ""rotate selected models"" > view matrix models > #3,0.99013,-0.041154,-0.13401,40.52,0.048709,0.99737,0.05359,4.4549,0.13145,-0.059588,0.98953,76.465 > view matrix models > #3,0.83521,-0.071849,0.54522,57.236,0.10253,0.99439,-0.026029,4.0354,-0.54029,0.077643,0.83789,42.237 > view matrix models > #3,-0.13373,-0.65121,0.74702,23.417,0.3678,0.66734,0.64759,39.014,-0.92024,0.36136,0.15027,1.9186 > view matrix models > #3,-0.91177,-0.096976,0.3991,-22.709,0.25588,0.62596,0.73668,37.33,-0.32126,0.7738,-0.54591,3.1278 > view matrix models > #3,-0.80155,0.57084,-0.17795,-38.748,0.26919,0.61025,0.74507,38.211,0.53391,0.54931,-0.64281,36.819 > view matrix models > #3,0.11326,0.96827,0.22279,13.695,0.63085,-0.24331,0.73677,54.669,0.7676,0.0571,-0.63839,47.704 > view matrix models > #3,0.46225,0.88488,-0.057507,19.167,0.34405,-0.1192,0.93136,48.865,0.81729,-0.4503,-0.35954,60.137 > view matrix models > #3,0.043053,0.53093,-0.84632,-25.395,0.47784,0.73299,0.48414,38.03,0.87739,-0.42525,-0.22214,67.398 > view matrix models > #3,0.00026825,0.55655,-0.83082,-26.736,0.96946,-0.20389,-0.13627,39.169,-0.24524,-0.80541,-0.53961,8.8711 > view matrix models > #3,0.24106,0.96826,-0.066102,9.2607,0.96749,-0.24512,-0.062315,41.683,-0.07654,-0.048931,-0.99587,-0.63934 > view matrix models > #3,-0.58732,0.80646,0.068377,-21.436,0.80931,0.5861,0.038863,37.177,-0.0087342,0.078163,-0.9969,2.0524 > ui mousemode right ""translate selected models"" > view matrix models > #3,-0.58732,0.80646,0.068377,-21.349,0.80931,0.5861,0.038863,33.964,-0.0087342,0.078163,-0.9969,0.73763 > view matrix models > #3,-0.58732,0.80646,0.068377,-23.389,0.80931,0.5861,0.038863,37.566,-0.0087342,0.078163,-0.9969,0.60685 > view matrix models > #3,-0.58732,0.80646,0.068377,-24.954,0.80931,0.5861,0.038863,37.422,-0.0087342,0.078163,-0.9969,0.41704 > ui mousemode right select > select clear > ui mousemode right select > fitmap #3 inMap #4 Fit molecule 1grl (#3) to map emd_1080.map (#4) using 29274 atoms average map value = 1.33, steps = 68 shifted from previous position = 1.79 rotated from previous position = 3.93 degrees atoms outside contour = 3694, contour level = 0.82501 Position of 1grl (#3) relative to emd_1080.map (#4) coordinates: Matrix rotation and translation -0.62432307 0.78087395 0.02136771 -27.24977747 0.78116390 0.62402063 0.01952473 34.16249403 0.00191247 0.02888143 -0.99958102 0.03599921 Axis 0.43337607 0.90111310 0.01342992 Axis point -21.84049927 0.00000000 -0.13033089 Rotation angle (degrees) 179.38147333 Shift along axis 18.97535298 > volume #4 transparency 0.5 > volume #4 color #4c41337f > volume #4 color #bfa37f7f > volume #4 color #d6b78f7f > volume #4 color #c6a9847f > volume #4 color #d3b58d7f > molmap #3 10 Opened 1grl map 10 as #5, grid size 63,63,41, pixel 3.33, shown at level 0.0611, step 1, values float32 > volume #5 style mesh > volume subtract #1 #3 minRms true volume subtract operation requires exactly two volumes > volume subtract #4 #5 minRms true Opened volume difference as #6, grid size 100,100,100, pixel 2.7, shown at step 1, values float32 Minimum RMS scale factor for ""1grl map 10 #5"" above level 0.061077 is 4.5559 > volume #6 color pink > volume #6 color pink transparency 0 > hide atoms > show ribbons > close > close > set bgColor black > set silhouettes false > open 1a0m fromDatabase eds Summary of feedback from opening 1a0m fetched from eds --- note | Fetching map 1a0m from http://www.ebi.ac.uk/pdbe/coordinates/files/1a0m.ccp4 Opened eds 1a0m as #1, grid size 97,101,88, pixel 0.37,0.37,0.367, shown at level 2.28, step 1, values float32 > volume #1 level 3.602 > volume #1 level 1.085 > open 1a0m Summary of feedback from opening 1a0m fetched from pdb --- note | Fetching compressed mmCIF 1a0m from http://files.rcsb.org/download/1a0m.cif 1a0m title: 1.1 angstrom crystal structure of A-conotoxin [TYR15]-epi [more info...] Chain information for 1a0m #2 --- Chain | Description | UniProt A B | α-conotoxin [TYR15]-epi | CXA1_CONEP Non-standard residues in 1a0m #2 --- NH2 — amino group > hide ribbons > show atoms > volume #1 level 1.0 style ,esh Invalid ""style"" argument: Should be one of 'image', 'mesh', 'solid', or 'surface' > volume #1 level 1.0 style mesh > volume zone #1 nwar #2 range 2 Expected a keyword > volume zone #1 nearAtoms #2 range 2 > hide #2 models > show #2 models > hide #!1 models > show #!1 models > volume zone #1 nearAtoms #2 range 3 > volume zone #1 nearAtoms #2 range 10 > volume zone #1 nearAtoms #2 range 1 > volume zone #1 nearAtoms #2 range 2 > volume #1 level 0.5 transparency 0.6 > cloes Unknown command: cloes > close [Repeated 1 time(s)] > open 1273 fromDatabase emdb Fetching url ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-1273/map/emd_1273.map.gz failed: > ui windowfill toggle [Repeated 3 time(s)] > buttonpanel Opioids rows 6 columns 4 fill columns > buttonpanel Opioids add alfentanil command ""hide models; show #1.1 model"" > hide models > show #1.1 models > buttonpanel Opioids rows 6 columns 4 fill columns [Repeated 10 time(s)] > buttonpanel Opioids rows 4 columns 4 fill columns > open C:\Users\ZHANGHJ\Desktop\SPEN1-2040\SPEN1-2040~\SPEN1-2040\ranked_0.pdb > format pdb No such file/path: C:\Users\ZHANGHJ\Desktop\SPEN1-2040\SPEN1-2040~\SPEN1-2040\ranked_0.pdb > open > C:/Users/ZHANGHJ/Desktop/SPEN/SPEN1-2040/SPEN1-2040~/SPEN1-2040/SPEN1-2040ranked_0.pdb Chain information for SPEN1-2040ranked_0.pdb #1 --- Chain | Description A | No description available > set bgColor white > select #1 1-20 Expected a keyword > ui mousemode right select [Repeated 1 time(s)] > select /A:1777 14 atoms, 14 bonds, 1 residue, 1 model selected > select #1:1-20 341 atoms, 344 bonds, 20 residues, 1 model selected > select 1-20 Expected an objects specifier or a keyword > select /A:1-20 341 atoms, 344 bonds, 20 residues, 1 model selected Drag select of 16 residues [Repeated 1 time(s)] > select /A:1-20 341 atoms, 344 bonds, 20 residues, 1 model selected Drag select of 7 residues > select clear Drag select of 15 residues Drag select of 5 residues > select clear [Repeated 2 time(s)] > select /A:1629 11 atoms, 10 bonds, 1 residue, 1 model selected > open C:/Users/ZHANGHJ/Desktop/SPEN/SPEN1621-3664/SPEN1621-3664ranked_0.pdb Chain information for SPEN1621-3664ranked_0.pdb #2 --- Chain | Description A | No description available > select /A:1-20 627 atoms, 634 bonds, 40 residues, 2 models selected > select #1/A:1-20 341 atoms, 344 bonds, 20 residues, 1 model selected > select #1/A:1-20 #2/A:90-100 494 atoms, 497 bonds, 31 residues, 2 models selected > ui tool show Matchmaker > matchmaker #2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker SPEN1-2040ranked_0.pdb, chain A (#1) with SPEN1621-3664ranked_0.pdb, chain A (#2), sequence alignment score = 1713.7 RMSD between 15 pruned atom pairs is 1.117 angstroms; (across all 360 pairs: 88.589) > matchmaker #2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker SPEN1-2040ranked_0.pdb, chain A (#1) with SPEN1621-3664ranked_0.pdb, chain A (#2), sequence alignment score = 1713.7 RMSD between 15 pruned atom pairs is 1.117 angstroms; (across all 360 pairs: 88.589) > select #1/A:1620-1980 #2/A:1-360 10873 atoms, 10982 bonds, 721 residues, 2 models selected > ui mousemode right translate > ui mousemode right zoom > select #1/A:1620-1980 #2/A:1-360 color red Expected a keyword > color red > ~colordef red Can not remove builtin color > color #1 dark blue > color #2 darkred pink Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > color #2 deep pink > color sel red > select clear Drag select of 3 residues > select clear Drag select of 5 residues > ui mousemode right ""translate selected models"" > view matrix models #1,1,0,0,-38.73,0,1,0,-30.687,0,0,1,22.149 > view matrix models #1,1,0,0,-57.299,0,1,0,-57.977,0,0,1,50.588 > view matrix models #1,1,0,0,-70.559,0,1,0,-64.98,0,0,1,53.206 > view matrix models #1,1,0,0,-93.755,0,1,0,-81.735,0,0,1,64.17 > select #2/A:1-360 5430 atoms, 5484 bonds, 360 residues, 1 model selected > color sel blue > select clear > hide ribbons #1:1-1320 Expected ',' or a keyword > ~ribbon #1:1-1320 > ~ribbon #1:1-1620 > ~ribbon #2:361-3664 > hide #1 models > show #1 models > ribbon #1,2 > show atoms #1:1-20 style stick Expected ',' or a keyword > atom #1:1-20 style stick Unknown command: atom #1:1-20 style stick > show atoms #1:1-20 Expected ',' or a keyword > atom #1:1-20 Unknown command: atom #1:1-20 > atoms #1:1-20 Unknown command: atoms #1:1-20 > surface #1:1-20 > surface #1:1-50 > surface #1:1-80 > surface #1:1-80 style mesh Expected a keyword > surface #1:1-80 style mesh Expected a keyword > style mesh Expected a keyword > view > ui tool show ""Show Volume Menu"" > ui tool show ""Show Sequence Viewer"" > sequence chain #1/A Alignment identifier is 1/A > open https://www.rbvi.ucsf.edu/chimerax/tutorials.html Opened https://www.rbvi.ucsf.edu/chimerax/tutorials.html > ui tool show ""Model Loops"" > log metadata #1-2 No models had metadata > log chains #1-2 Chain information for SPEN1-2040ranked_0.pdb #1 --- Chain | Description A | No description available Chain information for SPEN1621-3664ranked_0.pdb #2 --- Chain | Description A | No description available > ui mousemode right distance > ui mousemode right select Drag select of 10 residues > select clear Drag select of 7 residues > show sel target ab > select clear > ui mousemode right distance > distance #2/A:159@HB3 #2/A:160@HG22 Distance between SPEN1621-3664ranked_0.pdb #2/A ALA 159 HB3 and THR 160 HG22: 3.488Å > distance #2/A:162@OD1 #2/A:162@OD2 Distance between SPEN1621-3664ranked_0.pdb #2/A ASP 162 OD1 and OD2: 2.227Å > ui mousemode right distance > ui mousemode right select Drag select of 6 atoms, 3 bonds, 1 pseudobonds > select clear [Repeated 3 time(s)] > ui tool show ViewDockX No suitable models found for ViewDockX > ui tool show Distances > ~distance #2/A:159@HB3 #2/A:160@HG22 > ~distance #2/A:162@OD1 #2/A:162@OD2 Exactly two atoms must be selected! > 2dlabels > open 2dlabel '2dlabel' has no suffix > help 2dlabel > ui mousemode right label > label delete residues [Repeated 3 time(s)] > ui mousemode right ""move label"" > ui mousemode right label > 2dlabels xxx Expected 'all' or a 2d label name or a label models specifier or a keyword > 2dlabels text SPEN color black size 48 xpos 1 ypos 1 > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > 2dlabels text SPEN color black size 48 xpos 0.5 ypos 1 > ui mousemode right label [Repeated 2 time(s)] > label delete residues [Repeated 6 time(s)] > ui mousemode right label > label #2/A:1774 > label #2/A:1773 > label delete residues > label #2/A:1773 > ui mousemode right ""move label"" > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > help 2dlabel > interfaces ~solvent 0 buried areas: > interfaces ~solvent 0 buried areas: No atomic structure models chosen > 2dlabels text SPEN color black size 800 xpos 0.5 ypos 1 > 2dlabels text SPEN color black size 800 xpos 0.5 ypos 0.5 > 2dlabels text SPEN color black size 100 xpos 0.2 ypos 0.2 > 2dlabels #3.5 xpos 0.193 ypos 0.683 > close #3 > 2dlabels text SPEN color black size 48 xpos 0.2 ypos 0.2 > 2dlabels #4.1 xpos 0.376 ypos 0.736 > 2dlabels #4.1 xpos 0.369 ypos 0.735 [Repeated 1 time(s)] > 2dlabels #4.1 xpos 0.320 ypos 0.652 > 2dlabels #4.1 xpos 0.385 ypos 0.509 > 2dlabels #4.1 xpos 0.349 ypos 0.796 > 2dlabels text test color chocolate size 48 xpos 0.2 ypos 0.2 bgColor black > margin 12 outline 12 > 2dlabels #4.2 xpos 0.624 ypos 0.628 > 2dlabels text test color chocolate size 48 xpos 0.2 ypos 0.2 bgColor black > margin 12 > 2dlabels #4.3 xpos 0.489 ypos 0.260 > 2dlabels text test color chocolate size 48 xpos 0.2 ypos 0.2 bgColor black > 2dlabels #4.4 xpos 0.489 ypos 0.129 > 2dlabels #4.3 xpos 0.646 ypos 0.331 > 2dlabels text test color chocolate size 48 xpos 0.2 ypos 0.2 font aa > 2dlabels #4.5 xpos 0.229 ypos 0.184 > 2dlabels text test color chocolate size 48 xpos 0.2 ypos 0.2 font times > 2dlabels #4.5 xpos 0.210 ypos 0.104 > 2dlabels text test color chocolate size 48 xpos 0.2 ypos 0.2 font times new > roman Expected a keyword > 2dlabels text test color chocolate size 48 xpos 0.2 ypos 0.2 > 2dlabels text test color chocolate size 48 xpos 0.2 ypos 0.2 italic true > 2dlabels #4.6 xpos 0.332 ypos 0.645 > 2dlabels #4.7 xpos 0.011 ypos 0.207 > 2dlabels #4.7 xpos 0.012 ypos 0.207 > 2dlabels #4.8 xpos 0.259 ypos 0.200 > 2dlabels text test color chocolate size 48 xpos 0.2 ypos 0.2 italic true > bold true > 2dlabels #4.8 xpos 0.725 ypos 0.131 > 2dlabels text test color chocolate size 48 xpos 0.2 ypos 0.2 font b > 2dlabels #4.5 xpos 0.254 ypos 0.055 > 2dlabels #4.9 xpos 0.207 ypos 0.385 > 2dlabels #4.10 xpos 0.206 ypos 0.191 > 2dlabels text test color chocolate size 48 xpos 0.2 ypos 0.2 font c > 2dlabels #4.10 xpos 0.040 ypos 0.089 > 2dlabels text ""the α subunit"" > 2dlabels #4.12 xpos 0.048 ypos 0.920 > 2dlabels text ""reactants → products"" > 2dlabels #4.13 xpos 0.199 ypos 0.529 > 2dlabels arrow No 2D arrows in session > 2dlabels arrow start 0.1,0.2 end 0.3,0.5 > 2dlabels #4.9 xpos 0.250 ypos 0.288 [Repeated 1 time(s)] > 2dlabels #4.7 xpos 0.038 ypos 0.147 > 2dlabels #4.7 xpos 0.021 ypos 0.171 > 2dlabels #4.7 xpos 0.040 ypos 0.157 > 2dlabels #4.7 xpos 0.041 ypos 0.157 > 2dlabels arrow #5.1 end 0.302,0.496 > 2dlabels arrow #5.1 end 0.311,0.481 > 2dlabels arrow #5.1 end 0.141,0.349 > 2dlabels arrow #5.1 end 0.161,0.451 > 2dlabels arrow #5.1 end 0.159,0.379 > 2dlabels #4.7 xpos 0.361 ypos 0.205 > 2dlabels #4.10 xpos 0.168 ypos 0.021 > 2dlabels arrow #5.1 start 0.033,0.200 > 2dlabels arrow #5.1 end 0.169,0.352 > 2dlabels arrow start 0.1,0.2 end 0.3,0.5 weight 6 > 2dlabels arrow start 0.1,0.2 end 0.3,0.5 weight 1 [Repeated 1 time(s)] > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > 2dlabels #4.9 xpos 0.325 ypos 0.319 > 2dlabels arrow #5.2 end 0.277,0.760 > 2dlabels arrow #5.2 start 0.109,0.604 > close #5.4 > hide #5.3 models > hide #5.2 models > hide #5.1 models > 2dlabels arrow start 0.1,0.2 end 0.3,0.5 weight 0.5 > 2dlabels arrow #5.3 end 0.127,0.438 > 2dlabels arrow #5.3 start 0.025,0.364 Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 638, in gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_drag"") File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 537, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\movelabel.py"", line 62, in mouse_drag arrow(ses, [lbl], **{self._arr_part: (xpos, ypos)}) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 43, in arrow _update_arrow(session, a, **cmd_kw) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 119, in _update_arrow a.update_drawing() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\label\arrows.py"", line 402, in update_drawing d.display = self.visibility File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 255, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\core\models.py"", line 309, in _set_display Drawing.set_display(self, display) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 368, in set_display dp = self.display_positions File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 382, in get_display_positions dp = ones((len(self._positions),), bool) See log for complete Python traceback. > 2dlabels arrow # end 0.218,0.425 Expected an arrow models specifier or a keyword OpenGL version: 3.3.13596 Core Profile Forward-Compatible Context 20.10.22.14 27.20.11022.14001 OpenGL renderer: AMD Radeon(TM) Graphics OpenGL vendor: ATI Technologies Inc. Manufacturer: HUAWEI Model: KLVL-WXX9 OS: Microsoft Windows 11 家庭中文版 (Build 22000) Memory: 16,505,966,592 MaxProcessMemory: 137,438,953,344 CPU: 12 AMD Ryzen 5 4600H with Radeon Graphics OSLanguage: zh-CN Locale: ('zh_CN', 'cp936') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.10.8 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 comtypes: 1.1.10 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.3 ParmEd: 3.2.0 parso: 0.8.3 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pywin32: 228 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 WMI: 1.5.1 }}} " defect closed normal Depiction fixed all ChimeraX