id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 5391 Crash in Qt on exit chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.14.6-x86_64-i386-64bit ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [80198] Path: /Applications/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX Identifier: ChimeraX Version: 1.2.5 (1.2.5.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [80198] User ID: 501 Date/Time: 2021-10-12 11:54:23.465 -0500 OS Version: Mac OS X 10.14.6 (18G103) Report Version: 12 Bridge OS Version: 4.5 (17P5290) Anonymous UUID: 4F1446EA-F6FA-2D9B-62DB-55EC292FE741 Sleep/Wake UUID: 9DC215C7-D064-409D-B006-D6545F985213 Time Awake Since Boot: 1000000 seconds Time Since Wake: 1700 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x000000012d6ac360 Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0x12d6ac360: MALLOC_LARGE 000000012d69a000-000000012d6a7000 [ 52K] rw-/rwx SM=PRV --> MALLOC_LARGE 000000012d6c2000-000000012d6f0000 [ 184K] rw-/rwx SM=PRV Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff7dee32c6 __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff7df9ebf1 pthread_kill + 284 2 libsystem_c.dylib 0x00007fff7de00d8a raise + 26 3 libsystem_platform.dylib 0x00007fff7df93b5d _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 QtCore.abi3.so 0x000000010f79d28c cleanup_on_exit(_object*, _object*) + 12 6 org.python.python 0x00000001054397f6 cfunction_vectorcall_NOARGS + 214 7 org.python.python 0x00000001053fcdad PyVectorcall_Call + 109 8 org.python.python 0x0000000105566b91 atexit_callfuncs + 113 9 org.python.python 0x000000010550cbcf Py_FinalizeEx + 79 10 org.python.python 0x000000010552e67b Py_RunMain + 1659 11 org.python.python 0x000000010552ebdf pymain_main + 223 12 org.python.python 0x000000010552eaeb Py_Main + 43 13 edu.ucsf.cgl.ChimeraX 0x00000001053d5dc8 main + 120 14 libdyld.dylib 0x00007fff7dda83d5 start + 1 Thread 1: 0 libsystem_kernel.dylib 0x00007fff7dee086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff7df9f56e _pthread_cond_wait + 722 2 libopenblas.0.dylib 0x0000000106f4027b blas_thread_server + 507 3 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 2:: ThreadPoolServiceThread 0 libsystem_kernel.dylib 0x00007fff7dee50a6 kevent64 + 10 1 QtWebEngineCore 0x0000000115fc7e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x0000000115fc7cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x0000000115f5062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x0000000115f147cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x0000000115f5ba94 base::internal::ServiceThread::Run(base::RunLoop*) + 20 6 QtWebEngineCore 0x0000000115f6fa7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 3:: ThreadPoolBackgroundWorker 0 libsystem_kernel.dylib 0x00007fff7dedd22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7dedd76c mach_msg + 60 2 QtWebEngineCore 0x0000000115fbd492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000115f65778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000115f66150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x0000000115f65c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20 6 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 4:: Chrome_IOThread 0 libsystem_kernel.dylib 0x00007fff7dee50a6 kevent64 + 10 1 QtWebEngineCore 0x0000000115fc7e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x0000000115fc7cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x0000000115f5062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x0000000115f147cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x0000000119e94f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102 6 QtWebEngineCore 0x0000000115f6fa7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 5:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff7dedd22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7dedd76c mach_msg + 60 2 QtWebEngineCore 0x0000000115fbd492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000115fbd2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000115ee51db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x0000000115f5062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x0000000115f147cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000115f6fa7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 10 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 11 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 6:: CompositorTileWorker1 0 libsystem_kernel.dylib 0x00007fff7dee086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff7df9f56e _pthread_cond_wait + 722 2 QtWebEngineCore 0x0000000115fb4e18 base::ConditionVariable::Wait() + 104 3 QtWebEngineCore 0x000000011726c5f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56 4 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 5 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 6 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 7 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 7:: Chrome_InProcGpuThread 0 libsystem_kernel.dylib 0x00007fff7dedd22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7dedd76c mach_msg + 60 2 QtWebEngineCore 0x0000000115fbd492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000115ee520f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223 4 QtWebEngineCore 0x0000000115f5062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 5 QtWebEngineCore 0x0000000115f147cb base::RunLoop::Run() + 395 6 QtWebEngineCore 0x0000000115f6fa7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 8:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff7dee50a6 kevent64 + 10 1 QtWebEngineCore 0x0000000115fc7e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x0000000115fc7cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x0000000115f5062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x0000000115f147cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x0000000115f6fa7d base::Thread::ThreadMain() + 413 6 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 9:: VizCompositorThread 0 libsystem_kernel.dylib 0x00007fff7dedd22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7dedd76c mach_msg + 60 2 QtWebEngineCore 0x0000000115fbd492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000115fbd2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000115ee51db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x0000000115f5062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x0000000115f147cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000115f6fa7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 10 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 11 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 10:: ThreadPoolSingleThreadForegroundBlocking0 0 libsystem_kernel.dylib 0x00007fff7dedd22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7dedd76c mach_msg + 60 2 QtWebEngineCore 0x0000000115fbd492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000115fbd2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000115f6576a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x0000000115f66150 base::internal::WorkerThread::RunWorker() + 1024 6 QtWebEngineCore 0x0000000115f65d34 base::internal::WorkerThread::RunDedicatedWorker() + 20 7 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 11:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff7dedd22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7dedd76c mach_msg + 60 2 QtWebEngineCore 0x0000000115fbd492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000115fbd2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000115ee51db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x0000000115f5062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x0000000115f147cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000115f6fa7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 10 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 11 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 12:: MemoryInfra 0 libsystem_kernel.dylib 0x00007fff7dedd22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7dedd76c mach_msg + 60 2 QtWebEngineCore 0x0000000115fbd492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000115fbd2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000115ee51db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x0000000115f5062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x0000000115f147cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000115f6fa7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 10 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 11 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 13:: ThreadPoolSingleThreadSharedBackgroundBlocking1 0 libsystem_kernel.dylib 0x00007fff7dedd22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7dedd76c mach_msg + 60 2 QtWebEngineCore 0x0000000115fbd492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000115fbd2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000115f6576a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x0000000115f65e3d base::internal::WorkerThread::RunWorker() + 237 6 QtWebEngineCore 0x0000000115f65c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20 7 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 14:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff7dedd22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7dedd76c mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff51e5094e __CFRunLoopServiceMachPort + 328 3 com.apple.CoreFoundation 0x00007fff51e4febc __CFRunLoopRun + 1612 4 com.apple.CoreFoundation 0x00007fff51e4f61e CFRunLoopRunSpecific + 455 5 com.apple.AppKit 0x00007fff4f44e4a2 _NSEventThread + 175 6 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 7 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 8 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 15:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff7dedd22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7dedd76c mach_msg + 60 2 QtWebEngineCore 0x0000000115fbd492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000115f65778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000115f66150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x0000000115f65cd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 16: 0 libsystem_pthread.dylib 0x00007fff7df9b3f0 start_wqthread + 0 Thread 17: 0 libsystem_pthread.dylib 0x00007fff7df9b3f0 start_wqthread + 0 Thread 18: 0 libsystem_pthread.dylib 0x00007fff7df9b3f0 start_wqthread + 0 Thread 19: 0 libsystem_pthread.dylib 0x00007fff7df9b3f0 start_wqthread + 0 Thread 20:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff7dedd22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7dedd76c mach_msg + 60 2 QtWebEngineCore 0x0000000115fbd492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000115f65778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000115f66150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x0000000115f65cd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 21:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff7dedd22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7dedd76c mach_msg + 60 2 QtWebEngineCore 0x0000000115fbd492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000115f65778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000115f66150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x0000000115f65cd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 22:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff7dedd22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7dedd76c mach_msg + 60 2 QtWebEngineCore 0x0000000115fbd492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000115f65778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000115f66150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x0000000115f65cd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 23:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff7dedd22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7dedd76c mach_msg + 60 2 QtWebEngineCore 0x0000000115fbd492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000115f65778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000115f66150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x0000000115f65cd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 24:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff7dedd22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7dedd76c mach_msg + 60 2 QtWebEngineCore 0x0000000115fbd492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000115f65778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000115f65e3d base::internal::WorkerThread::RunWorker() + 237 5 QtWebEngineCore 0x0000000115f65cd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x0000000115fb8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff7df9c2eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff7df9f249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff7df9b40d thread_start + 13 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x00000001134725c0 rcx: 0x00000001058b8a48 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00000001058b8a80 rsp: 0x00000001058b8a48 r8: 0x00000001058b8f48 r9: 0x78af214aaa237b28 r10: 0x000000011347266c r11: 0x0000000000000287 r12: 0x0000000000000307 r13: 0x0000000000000536 r14: 0x000000000000000b r15: 0x000000000000002d rip: 0x00007fff7dee32c6 rfl: 0x0000000000000286 cr2: 0x00000001058b8f48 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x1053d5000 - 0x1053d5ff3 +edu.ucsf.cgl.ChimeraX (1.2.5 - 1.2.5.0) /Applications/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX 0x1053dc000 - 0x105612ff7 +org.python.python (3.8.8, [c] 2001-2019 Python 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libcompiler_rt.dylib (63.4) /usr/lib/system/libcompiler_rt.dylib 0x7fff7dc43000 - 0x7fff7dc4cff7 libcopyfile.dylib (146.250.1) /usr/lib/system/libcopyfile.dylib 0x7fff7dc4d000 - 0x7fff7dcd1fc3 libcorecrypto.dylib (602.260.2) /usr/lib/system/libcorecrypto.dylib 0x7fff7dd58000 - 0x7fff7dd91ff7 libdispatch.dylib (1008.270.1) /usr/lib/system/libdispatch.dylib 0x7fff7dd92000 - 0x7fff7ddbeff7 libdyld.dylib (655.1.1) /usr/lib/system/libdyld.dylib 0x7fff7ddbf000 - 0x7fff7ddbfffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib 0x7fff7ddc0000 - 0x7fff7ddccff3 libkxld.dylib (4903.271.2) /usr/lib/system/libkxld.dylib 0x7fff7ddcd000 - 0x7fff7ddcdff7 liblaunch.dylib (1336.261.2) /usr/lib/system/liblaunch.dylib 0x7fff7ddce000 - 0x7fff7ddd3fff libmacho.dylib (927.0.3) /usr/lib/system/libmacho.dylib 0x7fff7ddd4000 - 0x7fff7ddd6ffb libquarantine.dylib (86.220.1) /usr/lib/system/libquarantine.dylib 0x7fff7ddd7000 - 0x7fff7ddd8ff7 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib 0x7fff7ddd9000 - 0x7fff7ddf0ff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib 0x7fff7ddf1000 - 0x7fff7ddf1ff7 libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib 0x7fff7ddf2000 - 0x7fff7de79fff libsystem_c.dylib (1272.250.1) /usr/lib/system/libsystem_c.dylib 0x7fff7de7a000 - 0x7fff7de7dffb libsystem_configuration.dylib (963.270.3) /usr/lib/system/libsystem_configuration.dylib 0x7fff7de7e000 - 0x7fff7de81ff7 libsystem_coreservices.dylib (66) /usr/lib/system/libsystem_coreservices.dylib 0x7fff7de82000 - 0x7fff7de88fff libsystem_darwin.dylib (1272.250.1) /usr/lib/system/libsystem_darwin.dylib 0x7fff7de89000 - 0x7fff7de8fff7 libsystem_dnssd.dylib (878.270.2) /usr/lib/system/libsystem_dnssd.dylib 0x7fff7de90000 - 0x7fff7dedbffb libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib 0x7fff7dedc000 - 0x7fff7df04ff7 libsystem_kernel.dylib (4903.271.2) /usr/lib/system/libsystem_kernel.dylib 0x7fff7df05000 - 0x7fff7df50ff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib 0x7fff7df51000 - 0x7fff7df7bfff libsystem_malloc.dylib (166.270.1) /usr/lib/system/libsystem_malloc.dylib 0x7fff7df7c000 - 0x7fff7df86ff7 libsystem_networkextension.dylib (767.250.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff7df87000 - 0x7fff7df8efff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib 0x7fff7df8f000 - 0x7fff7df98fef libsystem_platform.dylib (177.270.1) /usr/lib/system/libsystem_platform.dylib 0x7fff7df99000 - 0x7fff7dfa3ff7 libsystem_pthread.dylib (330.250.2) /usr/lib/system/libsystem_pthread.dylib 0x7fff7dfa4000 - 0x7fff7dfa7ff7 libsystem_sandbox.dylib (851.270.1) /usr/lib/system/libsystem_sandbox.dylib 0x7fff7dfa8000 - 0x7fff7dfaaff3 libsystem_secinit.dylib (30.260.2) /usr/lib/system/libsystem_secinit.dylib 0x7fff7dfab000 - 0x7fff7dfb2ff3 libsystem_symptoms.dylib (820.267.1) /usr/lib/system/libsystem_symptoms.dylib 0x7fff7dfb3000 - 0x7fff7dfc8fff libsystem_trace.dylib (906.260.1) /usr/lib/system/libsystem_trace.dylib 0x7fff7dfca000 - 0x7fff7dfcfffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff7dfd0000 - 0x7fff7dffffff libxpc.dylib (1336.261.2) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 4 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 720332 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=812.6M resident=0K(0%) swapped_out_or_unallocated=812.6M(100%) Writable regions: Total=1.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.7G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 384K 3 Activity Tracing 256K 1 CG backing stores 992K 2 CG image 440K 37 CoreAnimation 2368K 48 CoreGraphics 8K 1 CoreImage 36K 4 CoreUI image data 3604K 33 CoreUI image file 472K 6 Foundation 20K 2 Kernel Alloc Once 8K 1 MALLOC 1.4G 338 MALLOC guard page 32K 8 MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated) Mach message 8K 1 Memory Tag 242 12K 1 Memory Tag 251 12K 1 OpenGL GLSL 384K 5 STACK GUARD 96K 24 Stack 155.2M 25 Stack Guard 56.0M 1 VM_ALLOCATE 142.0M 117 __DATA 47.3M 482 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 314.0M 139 __TEXT 498.6M 459 __UNICODE 564K 1 mapped file 110.9M 107 shared memory 1228K 19 =========== ======= ======= TOTAL 2.7G 1869 TOTAL, minus reserved VM space 2.7G 1869 Log: UCSF ChimeraX version: 1.2.5 (2021-05-24) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 INTEL-12.10.12 OpenGL renderer: Intel(R) UHD Graphics 617 OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: MacBookAir8,2 Processor Name: Intel Core i5 Processor Speed: 1.6 GHz Number of Processors: 1 Total Number of Cores: 2 L2 Cache (per Core): 256 KB L3 Cache: 4 MB Hyper-Threading Technology: Enabled Memory: 8 GB Boot ROM Version: 1037.120.87.0.0 (iBridge: 17.16.15290.0.0,0) Software: System Software Overview: System Version: macOS 10.14.6 (18G103) Kernel Version: Darwin 18.7.0 Time since boot: 32 days 1:15 Graphics/Displays: Intel UHD Graphics 617: Chipset Model: Intel UHD Graphics 617 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x87c0 Revision ID: 0x0002 Metal: Supported, feature set macOS GPUFamily2 v1 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.12.5 cftime: 1.5.0 chardet: 3.0.4 ChimeraX-AddCharge: 1.0.1 ChimeraX-AddH: 2.1.6 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.13.2 ChimeraX-AtomicLibrary: 3.1.3 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.5.2 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.1 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.2.1 ChimeraX-CommandLine: 1.1.4 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.2.5 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.1.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.1 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.3 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.1 ChimeraX-Help: 1.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.1 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.0.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.2.1 ChimeraX-MDcrds: 2.2 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.3 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.0.1 ChimeraX-ModelPanel: 1.0.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.1 ChimeraX-OpenCommand: 1.5 ChimeraX-PDB: 2.4.1 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.1 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.0.1 ChimeraX-ReadPbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.4 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.3.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.7.6 ChimeraX-uniprot: 2.1 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.21 decorator: 5.0.9 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.17 imagecodecs: 2020.5.30 imagesize: 1.2.0 ipykernel: 5.3.4 ipython: 7.18.1 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.7 jupyter-core: 4.7.1 kiwisolver: 1.3.1 line-profiler: 2.1.2 lxml: 4.6.2 lz4: 3.1.0 MarkupSafe: 2.0.1 matplotlib: 3.3.2 matplotlib-inline: 0.1.2 msgpack: 1.0.0 netCDF4: 1.5.4 networkx: 2.5 numexpr: 2.7.3 numpy: 1.19.2 numpydoc: 1.1.0 openvr: 1.14.1501 packaging: 20.9 ParmEd: 3.2.0 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.2.0 pip: 21.0.1 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.18 psutil: 5.7.2 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.7.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.1 pytz: 2021.1 pyzmq: 22.0.3 qtconsole: 4.7.7 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.5.2 setuptools: 50.3.2 sfftk-rw: 0.6.7.dev1 six: 1.15.0 snowballstemmer: 2.1.0 sortedcontainers: 2.2.2 Sphinx: 3.2.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.9.3 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.0.5 urllib3: 1.25.11 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.36.0 wheel-filename: 1.3.0 }}} " defect closed normal Window Toolkit duplicate Tom Goddard all ChimeraX