id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 5337 MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ChainMenuButton has been deleted chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.19041 ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.1 (2020-09-09) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > C:/Users/jenni/OneDrive/Documents/20210827_13B_2F/Phenix/Refine_50/B3_2F_827_refine_50.pdb Summary of feedback from opening C:/Users/jenni/OneDrive/Documents/20210827_13B_2F/Phenix/Refine_50/B3_2F_827_refine_50.pdb --- warnings | Ignored bad PDB record found on line 4799 TER Ignored bad PDB record found on line 9512 TER Ignored bad PDB record found on line 10255 END Chain information for B3_2F_827_refine_50.pdb #1 --- Chain | Description A | No description available B | No description available > open E:/Jen/187/Refine_378/187_refine_378.pdb Chain information for 187_refine_378.pdb #2 --- Chain | Description A | No description available B | No description available > ui tool show ""Basic Actions"" > hide #1/A target abp > hide #1/A target c > hide #1/A target s > hide #2/A target abp > hide #2/A target c > hide #2/A target s > undo > undo > undo > undo > undo > ui tool show Matchmaker > matchmaker #!2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker B3_2F_827_refine_50.pdb, chain B (#1) with 187_refine_378.pdb, chain A (#2), sequence alignment score = 1399.9 RMSD between 267 pruned atom pairs is 0.320 angstroms; (across all 267 pairs: 0.320) > matchmaker #!1 to #2 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 187_refine_378.pdb, chain A (#2) with B3_2F_827_refine_50.pdb, chain B (#1), sequence alignment score = 1399.9 RMSD between 267 pruned atom pairs is 0.320 angstroms; (across all 267 pairs: 0.320) > matchmaker #!2 to #1/B pairing bs Parameters --- Chain pairing | bs Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker B3_2F_827_refine_50.pdb, chain B (#1) with 187_refine_378.pdb, chain A (#2), sequence alignment score = 1399.9 RMSD between 267 pruned atom pairs is 0.320 angstroms; (across all 267 pairs: 0.320) > matchmaker #!1 to #2/A pairing bs Parameters --- Chain pairing | bs Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 187_refine_378.pdb, chain A (#2) with B3_2F_827_refine_50.pdb, chain B (#1), sequence alignment score = 1399.9 RMSD between 267 pruned atom pairs is 0.320 angstroms; (across all 267 pairs: 0.320) > matchmaker #!1 to #2/B pairing bs Parameters --- Chain pairing | bs Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 187_refine_378.pdb, chain B (#2) with B3_2F_827_refine_50.pdb, chain B (#1), sequence alignment score = 1385.5 RMSD between 266 pruned atom pairs is 0.258 angstroms; (across all 266 pairs: 0.258) > matchmaker #!1 to #2/B pairing bs Parameters --- Chain pairing | bs Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 187_refine_378.pdb, chain B (#2) with B3_2F_827_refine_50.pdb, chain B (#1), sequence alignment score = 1385.5 RMSD between 266 pruned atom pairs is 0.258 angstroms; (across all 266 pairs: 0.258) > matchmaker #2/B to #1/B pairing ss Parameters --- Chain pairing | ss Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker B3_2F_827_refine_50.pdb, chain B (#1) with 187_refine_378.pdb, chain B (#2), sequence alignment score = 1385.5 RMSD between 266 pruned atom pairs is 0.258 angstroms; (across all 266 pairs: 0.258) Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger ""changes"": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger ""changes"": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. > matchmaker #1/B to #2/B pairing ss Parameters --- Chain pairing | ss Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 187_refine_378.pdb, chain B (#2) with B3_2F_827_refine_50.pdb, chain B (#1), sequence alignment score = 1385.5 RMSD between 266 pruned atom pairs is 0.258 angstroms; (across all 266 pairs: 0.258) Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger ""changes"": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger ""changes"": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger ""changes"": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger ""changes"": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. > hide #1/A target abp > hide #1/A target c Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger ""changes"": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger ""changes"": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger ""changes"": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger ""changes"": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. > hide #1/A target abp > hide #1/A target c > hide #1/A target s > hide #2/A target abp Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger ""changes"": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger ""changes"": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. > hide #2/A target c Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger ""changes"": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger ""changes"": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger ""changes"": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger ""changes"": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 457.63 OpenGL renderer: GeForce GTX 1650/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: ASUSTeK COMPUTER INC. Model: ROG Strix G531GT_G531GT OS: Microsoft Windows 10 Home (Build 19042) Memory: 8,434,601,984 MaxProcessMemory: 137,438,953,344 CPU: 12 Intel(R) Core(TM) i7-9750H CPU @ 2.60GHz"" PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.9 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.8.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.6.20 chardet: 3.0.4 ChimeraX-AddH: 2.1.3 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.6.1 ChimeraX-AtomSearch: 2.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.0.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.0 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.0 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.0 ChimeraX-Clipper: 0.15.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.1 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.0.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-DataFormats: 1.0 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.0 ChimeraX-Help: 1.0 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.0 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0 ChimeraX-ISOLDE: 1.1.0 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.0 ChimeraX-Log: 1.1.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Map: 1.0.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.1 ChimeraX-MDcrds: 2.0 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.0 ChimeraX-mmCIF: 2.2 ChimeraX-MMTF: 2.0 ChimeraX-Modeller: 1.0 ChimeraX-ModelPanel: 1.0 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.0 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0 ChimeraX-OpenCommand: 1.2.1 ChimeraX-PDB: 2.1 ChimeraX-PDBBio: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0 ChimeraX-PubChem: 2.0 ChimeraX-Read-Pbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.0 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.0.4 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.0 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0 ChimeraX-ToolshedUtils: 1.0 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.2.3 ChimeraX-uniprot: 2.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.20 decorator: 4.4.2 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 gdcm: 2.8.8 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.16 imagecodecs: 2020.5.30 imagecodecs-lite: 2020.1.31 imagesize: 1.2.0 ipykernel: 5.3.0 ipython: 7.15.0 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.3 jupyter-core: 4.6.3 kiwisolver: 1.2.0 line-profiler: 2.1.2 lxml: 4.5.1 MarkupSafe: 1.1.1 matplotlib: 3.2.1 msgpack: 1.0.0 netifaces: 0.10.9 networkx: 2.4 numexpr: 2.7.1 numpy: 1.18.5+mkl numpydoc: 1.0.0 openvr: 1.12.501 packaging: 20.4 parso: 0.7.1 pickleshare: 0.7.5 Pillow: 7.1.2 pip: 20.2.2 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.7 psutil: 5.7.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.6.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.12.3 PyQt5-sip: 4.19.19 PyQtWebEngine-commercial: 5.12.1 python-dateutil: 2.8.1 pytz: 2020.1 pywin32: 228 pyzmq: 19.0.2 qtconsole: 4.7.4 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.4.1 Send2Trash: 1.5.0 SEQCROW: 0.25.2 setuptools: 49.4.0 sfftk-rw: 0.6.6.dev0 six: 1.15.0 snowballstemmer: 2.0.0 sortedcontainers: 2.2.2 Sphinx: 3.1.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.6.3 tinyarray: 1.2.2 tornado: 6.0.4 traitlets: 5.0.4 urllib3: 1.25.10 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.34.2 WMI: 1.5.1 }}} " defect closed normal Structure Comparison duplicate all ChimeraX