id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 5125 RFE: scroll contour jaremko@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.3.dev202107210242 (2021-07-21 02:42:36 UTC) Description Add feature that allows you to scroll the contour when the mouser is hovering over the contour histogram. This feature already works for the morph slider, so I figure this can be implemented in the contour histogram. Log: > ui mousemode right zoom > set bgColor white > graphics silhouettes true > graphics silhouettes width 3 > hide all atoms > style stick Changed 0 atom styles > style ions sphere Changed 0 atom styles > style ions sphere Changed 0 atom styles > show all cartoons > show ligand target ab > show ions atoms > show sidechain & (ligand | ions) :< 3.5 target ab > color /a #55c087 > color /b #ffe255 > color /c #f6986c > color /d #6b80bc > color /e #aa7fba > color /g #FFC0CB > color /h #b2b2b2 > color /i red > color byhetero > lighting soft > lighting depthCue false > cartoon suppressBackboneDisplay false > volume fastEncloseVolume 80000 Error running startup command 'vol fastEncloseVolume 80000': No volumes specified UCSF ChimeraX version: 1.3.dev202107210242 (2021-07-21) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/jaremko/Documents/cryoem/2021-08-26_x138-Hs128-Nuc200/P146/J4/cryosparc_P146_J4_class_01_final_volume.mrc Opened cryosparc_P146_J4_class_01_final_volume.mrc as #1, grid size 192,192,192, pixel 2.38, shown at level 0.131, step 1, values float32 > open > /Users/jaremko/Documents/cryoem/2021-08-26_x138-Hs128-Nuc200/P146/J4/cryosparc_P146_J4_class_02_final_volume.mrc Opened cryosparc_P146_J4_class_02_final_volume.mrc as #2, grid size 192,192,192, pixel 2.38, shown at level 0.129, step 1, values float32 > open > /Users/jaremko/Documents/cryoem/2021-08-26_x138-Hs128-Nuc200/P146/J4/cryosparc_P146_J4_class_03_final_volume.mrc Opened cryosparc_P146_J4_class_03_final_volume.mrc as #3, grid size 192,192,192, pixel 2.38, shown at level 0.128, step 1, values float32 > open > /Users/jaremko/Documents/cryoem/2021-08-26_x138-Hs128-Nuc200/P146/J4/cryosparc_P146_J4_class_04_final_volume.mrc Opened cryosparc_P146_J4_class_04_final_volume.mrc as #4, grid size 192,192,192, pixel 2.38, shown at level 0.128, step 1, values float32 > tile 4 models tiled > volume #1 level 0.2303 > volume #2 level 0.2677 > volume #3 level 0.2535 > volume #4 level 0.2523 > volume #2 level 0.3443 > close session > open > /Users/jaremko/Documents/cryoem/2021-08-26_x138-Hs128-Nuc200/P146/J9/cryosparc_P146_J9_class_00_00222_volume.mrc Opened cryosparc_P146_J9_class_00_00222_volume.mrc as #1, grid size 84,84,84, pixel 5.45, shown at level 0.168, step 1, values float32 > open > /Users/jaremko/Documents/cryoem/2021-08-26_x138-Hs128-Nuc200/P146/J9/cryosparc_P146_J9_class_01_00222_volume.mrc Opened cryosparc_P146_J9_class_01_00222_volume.mrc as #2, grid size 84,84,84, pixel 5.45, shown at level 0.386, step 1, values float32 > open > /Users/jaremko/Documents/cryoem/2021-08-26_x138-Hs128-Nuc200/P146/J9/cryosparc_P146_J9_class_02_00222_volume.mrc Opened cryosparc_P146_J9_class_02_00222_volume.mrc as #3, grid size 84,84,84, pixel 5.45, shown at level 0.342, step 1, values float32 > open > /Users/jaremko/Documents/cryoem/2021-08-26_x138-Hs128-Nuc200/P146/J9/cryosparc_P146_J9_class_03_00222_volume.mrc Opened cryosparc_P146_J9_class_03_00222_volume.mrc as #4, grid size 84,84,84, pixel 5.45, shown at level 0.732, step 1, values float32 > open > /Users/jaremko/Documents/cryoem/2021-08-26_x138-Hs128-Nuc200/P146/J9/cryosparc_P146_J9_class_04_00222_volume.mrc Opened cryosparc_P146_J9_class_04_00222_volume.mrc as #5, grid size 84,84,84, pixel 5.45, shown at level 0.291, step 1, values float32 > hide #!2 models > hide #!3 models > hide #!4 models > hide #!5 models > volume #1 level 1.383 > volume #2 level 0.2664 > volume #2 level 0.9959 > volume #3 level 0.3588 > volume #4 level 0.05074 > volume #4 level 0.3107 > volume #5 level 0.2057 > volume #2 level 0.4004 > volume #3 level 0.2377 > volume #3 level 0.5491 > volume #1 level 0.1678 > volume #1 level 0.1808 > volume #1 level 0.1155 > volume #1 level 0.1808 > close session > open > /Users/jaremko/Documents/cryoem/2021-08-26_x138-Hs128-Nuc200/P146/J12/cryosparc_P146_J12_cluster_001.mrc Opened cryosparc_P146_J12_cluster_001.mrc as #1, grid size 416,416,416, pixel 1.1, shown at level 0.00656, step 2, values float32 > open > /Users/jaremko/Documents/cryoem/2021-08-26_x138-Hs128-Nuc200/P146/J12/cryosparc_P146_J12_cluster_002.mrc Opened cryosparc_P146_J12_cluster_002.mrc as #2, grid size 416,416,416, pixel 1.1, shown at level 0.0067, step 2, values float32 > close session > open > /Users/jaremko/Documents/cryoem/2021-08-26_x138-Hs128-Nuc200/P146/J12/cryosparc_P146_J12_cluster_000.mrc Opened cryosparc_P146_J12_cluster_000.mrc as #1, grid size 416,416,416, pixel 1.1, shown at level 0.00664, step 2, values float32 > open > /Users/jaremko/Documents/cryoem/2021-08-26_x138-Hs128-Nuc200/P146/J12/cryosparc_P146_J12_cluster_001.mrc Opened cryosparc_P146_J12_cluster_001.mrc as #2, grid size 416,416,416, pixel 1.1, shown at level 0.00656, step 2, values float32 > open > /Users/jaremko/Documents/cryoem/2021-08-26_x138-Hs128-Nuc200/P146/J12/cryosparc_P146_J12_cluster_002.mrc Opened cryosparc_P146_J12_cluster_002.mrc as #3, grid size 416,416,416, pixel 1.1, shown at level 0.0067, step 2, values float32 > volume all step 1 > hide #!3 models > hide #!2 models > volume #3 level 0.03389 > volume #1 level 0.005372 > volume #1 level 0.02062 > volume #2 level 0.005621 > volume #2 level 0.006556 > volume #3 level 0.004115 > volume morph #1,2 Opened morph as #4, grid size 416,416,416, pixel 1.1, shown at step 1, values float32 > volume #4 level 0.007524 > volume #4 level 0.1001 > volume morph #1,3 Opened morph as #5, grid size 416,416,416, pixel 1.1, shown at step 1, values float32 > volume #5 level 0.1565 > volume #5 level 0.005845 > volume #4 level 0.005662 > volume #4 level 0.008468 OpenGL version: 4.1 ATI-4.5.14 OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine OpenGL vendor: ATI Technologies Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro16,1 Processor Name: 8-Core Intel Core i9 Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 256 KB L3 Cache: 16 MB Hyper-Threading Technology: Enabled Memory: 32 GB System Firmware Version: 1554.120.19.0.0 (iBridge: 18.16.14663.0.0,0) Software: System Software Overview: System Version: macOS 11.4 (20F71) Kernel Version: Darwin 20.5.0 Time since boot: 16 days 18:59 Graphics/Displays: Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0002 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Family: Supported, Metal GPUFamily macOS 2 AMD Radeon Pro 5500M: Chipset Model: AMD Radeon Pro 5500M Type: GPU Bus: PCIe PCIe Lane Width: x8 VRAM (Total): 8 GB Vendor: AMD (0x1002) Device ID: 0x7340 Revision ID: 0x0040 ROM Revision: 113-D3220E-190 VBIOS Version: 113-D32206U1-020 Option ROM Version: 113-D32206U1-020 EFI Driver Version: 01.A1.190 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 3072 x 1920 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.5.30 cftime: 1.5.0 chardet: 4.0.0 charset-normalizer: 2.0.3 ChimeraX-AddCharge: 1.1.4 ChimeraX-AddH: 2.1.10 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-AltlocExplorer: 1.0 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.26.1 ChimeraX-AtomicLibrary: 3.4 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.5.2 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.1 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.3.2 ChimeraX-CommandLine: 1.1.4 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3.dev202107210242 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.4 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1 ChimeraX-Help: 1.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.1 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.2.1 ChimeraX-MDcrds: 2.4 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.3 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.0.2 ChimeraX-ModelPanel: 1.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.6.2 ChimeraX-PDB: 2.4.4 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.1 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.4.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.1 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.10.1 ChimeraX-uniprot: 2.1 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 comtypes: 1.1.10 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.23 decorator: 4.4.2 distlib: 0.3.1 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.3.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.20 imagecodecs: 2021.4.28 imagesize: 1.2.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 2.11.3 jupyter-client: 6.1.12 jupyter-core: 4.7.1 kiwisolver: 1.3.1 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 1.1.1 matplotlib: 3.4.2 matplotlib-inline: 0.1.2 msgpack: 1.0.2 netCDF4: 1.5.6 networkx: 2.5.1 numexpr: 2.7.3 numpy: 1.21.0 numpydoc: 1.1.0 openvr: 1.16.801 packaging: 21.0 ParmEd: 3.2.0 parso: 0.8.2 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 8.2.0 pip: 21.1.1 pkginfo: 1.7.0 prompt-toolkit: 3.0.19 psutil: 5.8.0 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.9.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.1 pytz: 2021.1 pyzmq: 22.1.0 qtconsole: 5.1.0 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.25.1 scipy: 1.6.3 setuptools: 57.0.0 sfftk-rw: 0.7.0.post1 six: 1.16.0 snowballstemmer: 2.1.0 sortedcontainers: 2.4.0 Sphinx: 4.0.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.0.5 urllib3: 1.26.6 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.36.2 wheel-filename: 1.3.0 }}} " enhancement closed normal Volume Data wontfix all ChimeraX