id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 4357 Graphics crash, macOS 10.15.7, Radeon Pro 580X, report 1 chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Darwin-19.6.0-x86_64-i386-64bit ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [11562] Path: /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.1.1 (1.1.1.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [11562] User ID: 559435 Date/Time: 2021-03-11 11:58:06.382 +0100 OS Version: Mac OS X 10.15.7 (19H524) Report Version: 12 Anonymous UUID: 2450707F-DAB0-F8E3-46BB-0EDEA211089F Time Awake Since Boot: 2000000 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Application Specific Information: abort() called Application Specific Signatures: Graphics kernel error: 0xfffffff9 Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff71dcf33a __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff71e8be60 pthread_kill + 430 2 libsystem_c.dylib 0x00007fff71ce693e raise + 26 3 libsystem_platform.dylib 0x00007fff71e805fd _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 libsystem_c.dylib 0x00007fff71d56808 abort + 120 6 libGPUSupportMercury.dylib 0x00007fff590600a5 gpusGenerateCrashLog.cold.1 + 95 7 libGPUSupportMercury.dylib 0x00007fff5905718f gpusGenerateCrashLog + 89 8 com.apple.AMDRadeonX4000GLDriver 0x0000000127c74cd1 gpusKillClientExt + 9 9 libGPUSupportMercury.dylib 0x00007fff5905855b gpusSubmitDataBuffers + 164 10 com.apple.AMDRadeonX4000GLDriver 0x0000000127c4f857 glrATI_Hwl_SubmitPacketsWithToken + 91 11 com.apple.AMDRadeonX4000GLDriver 0x0000000127ca7512 gldPresentFramebufferData + 83 12 GLEngine 0x00007fff428bc8d1 glSwap_Exec + 97 13 com.apple.opengl 0x00007fff4289e473 CGLFlushDrawable + 59 14 com.apple.AppKit 0x00007fff3539b75a -[NSOpenGLContext flushBuffer] + 20 15 libqcocoa.dylib 0x00000001261d6d3d 0x126180000 + 355645 16 QtGui 0x000000011bc90a6c QOpenGLContext::swapBuffers(QSurface*) + 412 17 QtGui.so 0x000000011e75659f meth_QOpenGLContext_swapBuffers(_object*, _object*) + 95 18 org.python.python 0x000000010a63e382 _PyMethodDef_RawFastCallKeywords + 226 19 org.python.python 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0x00007fff71e8c109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff71e87b8b thread_start + 15 Thread 21:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff71dc8dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff71dc9170 mach_msg + 60 2 QtWebEngineCore 0x0000000120d2732d 0x11eb85000 + 35267373 3 QtWebEngineCore 0x0000000120d2722f 0x11eb85000 + 35267119 4 QtWebEngineCore 0x0000000120cdb05d 0x11eb85000 + 34955357 5 QtWebEngineCore 0x0000000120d04085 0x11eb85000 + 35123333 6 QtWebEngineCore 0x0000000120d569bc 0x11eb85000 + 35461564 7 QtWebEngineCore 0x0000000120d96717 0x11eb85000 + 35723031 8 libsystem_pthread.dylib 0x00007fff71e8c109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff71e87b8b thread_start + 15 Thread 22:: Chrome_InProcGpuThread 0 libsystem_kernel.dylib 0x00007fff71dc8dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff71dc9170 mach_msg + 60 2 QtWebEngineCore 0x0000000120d2732d 0x11eb85000 + 35267373 3 QtWebEngineCore 0x0000000120cdb052 0x11eb85000 + 34955346 4 QtWebEngineCore 0x0000000120d04085 0x11eb85000 + 35123333 5 QtWebEngineCore 0x0000000120d569bc 0x11eb85000 + 35461564 6 QtWebEngineCore 0x0000000120d96717 0x11eb85000 + 35723031 7 libsystem_pthread.dylib 0x00007fff71e8c109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff71e87b8b thread_start + 15 Thread 23:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff71dcd766 kevent + 10 1 QtWebEngineCore 0x0000000120fe89a9 0x11eb85000 + 38156713 2 QtWebEngineCore 0x0000000120fe5cbd 0x11eb85000 + 38145213 3 QtWebEngineCore 0x0000000120d9ccdc 0x11eb85000 + 35749084 4 QtWebEngineCore 0x0000000120d04085 0x11eb85000 + 35123333 5 QtWebEngineCore 0x0000000120d569bc 0x11eb85000 + 35461564 6 QtWebEngineCore 0x0000000120d96717 0x11eb85000 + 35723031 7 libsystem_pthread.dylib 0x00007fff71e8c109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff71e87b8b thread_start + 15 Thread 24:: TaskSchedulerSingleThreadForegroundBlocking1 0 libsystem_kernel.dylib 0x00007fff71dc8dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff71dc9170 mach_msg + 60 2 QtWebEngineCore 0x0000000120d2732d 0x11eb85000 + 35267373 3 QtWebEngineCore 0x0000000120d2722f 0x11eb85000 + 35267119 4 QtWebEngineCore 0x0000000120d3ed1a 0x11eb85000 + 35364122 5 QtWebEngineCore 0x0000000120d3f65b 0x11eb85000 + 35366491 6 QtWebEngineCore 0x0000000120d3f324 0x11eb85000 + 35365668 7 QtWebEngineCore 0x0000000120d96717 0x11eb85000 + 35723031 8 libsystem_pthread.dylib 0x00007fff71e8c109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff71e87b8b thread_start + 15 Thread 25:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff71dc8dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff71dc9170 mach_msg + 60 2 QtWebEngineCore 0x0000000120d2732d 0x11eb85000 + 35267373 3 QtWebEngineCore 0x0000000120d2722f 0x11eb85000 + 35267119 4 QtWebEngineCore 0x0000000120cdb05d 0x11eb85000 + 34955357 5 QtWebEngineCore 0x0000000120d04085 0x11eb85000 + 35123333 6 QtWebEngineCore 0x0000000120d569bc 0x11eb85000 + 35461564 7 QtWebEngineCore 0x0000000120d96717 0x11eb85000 + 35723031 8 libsystem_pthread.dylib 0x00007fff71e8c109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff71e87b8b thread_start + 15 Thread 26: 0 libsystem_pthread.dylib 0x00007fff71e87b68 start_wqthread + 0 Thread 27:: TaskSchedulerForegroundWorker 0 libsystem_kernel.dylib 0x00007fff71dc8dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff71dc9170 mach_msg + 60 2 QtWebEngineCore 0x0000000120d2732d 0x11eb85000 + 35267373 3 QtWebEngineCore 0x0000000120d27421 0x11eb85000 + 35267617 4 QtWebEngineCore 0x0000000120d3ed28 0x11eb85000 + 35364136 5 QtWebEngineCore 0x0000000120d3f65b 0x11eb85000 + 35366491 6 QtWebEngineCore 0x0000000120d3f2c4 0x11eb85000 + 35365572 7 QtWebEngineCore 0x0000000120d96717 0x11eb85000 + 35723031 8 libsystem_pthread.dylib 0x00007fff71e8c109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff71e87b8b thread_start + 15 Thread 28: 0 libsystem_pthread.dylib 0x00007fff71e87b68 start_wqthread + 0 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x000000010aea0dc0 rcx: 0x00007f88b7577a58 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007f88b7577a80 rsp: 0x00007f88b7577a58 r8: 0x00007f88b7577f48 r9: 0x676c833b90274eba r10: 0x000000010aea0dc0 r11: 0x0000000000000246 r12: 0x0000000000000307 r13: 0x00007f88bc415e70 r14: 0x0000000000000006 r15: 0x0000000000000016 rip: 0x00007fff71dcf33a rfl: 0x0000000000000246 cr2: 0x000000010a878f7c Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x10a60c000 - 0x10a60cff3 +edu.ucsf.cgl.ChimeraX (1.1.1 - 1.1.1.0) /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX 0x10a61a000 - 0x10a815fff +org.python.python (3.7.8, [c] 2001-2019 Python Software Foundation. - 3.7.8) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/Python 0x10ab8a000 - 0x10ab8bff7 +_heapq.cpython-37m-darwin.so (0) 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0x10b42fff3 +_datetime.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_datetime.cpython-37m-darwin.so 0x10b47f000 - 0x10b47fff3 +_scproxy.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_scproxy.cpython-37m-darwin.so 0x10b487000 - 0x10b4c5ff7 +_decimal.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_decimal.cpython-37m-darwin.so 0x10b529000 - 0x10b556ff3 +pyexpat.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/pyexpat.cpython-37m-darwin.so 0x10b56e000 - 0x10b56fff3 +_queue.cpython-37m-darwin.so (0) 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0x7fff6bbbfffd com.apple.login (3.0 - 3.0) /System/Library/PrivateFrameworks/login.framework/Versions/A/login 0x7fff6bbf1000 - 0x7fff6bbfdffd com.apple.perfdata (1.0 - 51.100.6) /System/Library/PrivateFrameworks/perfdata.framework/Versions/A/perfdata 0x7fff6e682000 - 0x7fff6e68eff9 libAudioStatistics.dylib (1104.96) /usr/lib/libAudioStatistics.dylib 0x7fff6e68f000 - 0x7fff6e6c2ffa libAudioToolboxUtility.dylib (1104.96) /usr/lib/libAudioToolboxUtility.dylib 0x7fff6e6c9000 - 0x7fff6e6fdfff libCRFSuite.dylib (48) /usr/lib/libCRFSuite.dylib 0x7fff6e700000 - 0x7fff6e70afff libChineseTokenizer.dylib (34) /usr/lib/libChineseTokenizer.dylib 0x7fff6e70b000 - 0x7fff6e793fff libCoreStorage.dylib (551) /usr/lib/libCoreStorage.dylib 0x7fff6e796000 - 0x7fff6e798ff7 libDiagnosticMessagesClient.dylib (112) /usr/lib/libDiagnosticMessagesClient.dylib 0x7fff6e7de000 - 0x7fff6e995ffb libFosl_dynamic.dylib (100.4) /usr/lib/libFosl_dynamic.dylib 0x7fff6e9bc000 - 0x7fff6e9c2ff3 libIOReport.dylib (54) /usr/lib/libIOReport.dylib 0x7fff6eaa4000 - 0x7fff6eaabfff libMatch.1.dylib (36) /usr/lib/libMatch.1.dylib 0x7fff6eada000 - 0x7fff6eafaff7 libMobileGestalt.dylib (826.140.5) /usr/lib/libMobileGestalt.dylib 0x7fff6eb7a000 - 0x7fff6ec57ff7 libSMC.dylib (20) /usr/lib/libSMC.dylib 0x7fff6ec6c000 - 0x7fff6ec6dfff libSystem.B.dylib (1281.100.1) /usr/lib/libSystem.B.dylib 0x7fff6ec6e000 - 0x7fff6ecf9ff7 libTelephonyUtilDynamic.dylib (5017.1) /usr/lib/libTelephonyUtilDynamic.dylib 0x7fff6ecfa000 - 0x7fff6ecfbfff libThaiTokenizer.dylib (3) /usr/lib/libThaiTokenizer.dylib 0x7fff6ed13000 - 0x7fff6ed29fff libapple_nghttp2.dylib (1.39.2) /usr/lib/libapple_nghttp2.dylib 0x7fff6ed5e000 - 0x7fff6edd0ff7 libarchive.2.dylib (72.140.2) /usr/lib/libarchive.2.dylib 0x7fff6edd1000 - 0x7fff6ee6afe5 libate.dylib (3.0.1) /usr/lib/libate.dylib 0x7fff6ee6e000 - 0x7fff6ee6eff3 libauto.dylib (187) /usr/lib/libauto.dylib 0x7fff6ee6f000 - 0x7fff6ef33ffe libboringssl.dylib (283.120.1) /usr/lib/libboringssl.dylib 0x7fff6ef34000 - 0x7fff6ef44ffb libbsm.0.dylib (60.100.1) /usr/lib/libbsm.0.dylib 0x7fff6ef45000 - 0x7fff6ef51fff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib 0x7fff6ef52000 - 0x7fff6efa4fff libc++.1.dylib (902.1) /usr/lib/libc++.1.dylib 0x7fff6efa5000 - 0x7fff6efbaffb libc++abi.dylib (902) /usr/lib/libc++abi.dylib 0x7fff6efbb000 - 0x7fff6efbbfff libcharset.1.dylib (59) /usr/lib/libcharset.1.dylib 0x7fff6efbc000 - 0x7fff6efcdfff libcmph.dylib (8) /usr/lib/libcmph.dylib 0x7fff6efce000 - 0x7fff6efe5fd7 libcompression.dylib (87) /usr/lib/libcompression.dylib 0x7fff6f2bf000 - 0x7fff6f2d5ff7 libcoretls.dylib (167) /usr/lib/libcoretls.dylib 0x7fff6f2d6000 - 0x7fff6f2d7fff libcoretls_cfhelpers.dylib (167) /usr/lib/libcoretls_cfhelpers.dylib 0x7fff6f881000 - 0x7fff6f88cfff libcsfde.dylib (551) /usr/lib/libcsfde.dylib 0x7fff6f894000 - 0x7fff6f8f3ff7 libcups.2.dylib (483.7) /usr/lib/libcups.2.dylib 0x7fff6f9fd000 - 0x7fff6f9fdfff libenergytrace.dylib (21) /usr/lib/libenergytrace.dylib 0x7fff6f9fe000 - 0x7fff6fa16fff libexpat.1.dylib (19.60.2) /usr/lib/libexpat.1.dylib 0x7fff6fa24000 - 0x7fff6fa26fff libfakelink.dylib (149.1) /usr/lib/libfakelink.dylib 0x7fff6fa35000 - 0x7fff6fa3afff libgermantok.dylib (24) /usr/lib/libgermantok.dylib 0x7fff6fa3b000 - 0x7fff6fa44ff7 libheimdal-asn1.dylib (564.140.1) /usr/lib/libheimdal-asn1.dylib 0x7fff6fa45000 - 0x7fff6fb35fff libiconv.2.dylib (59) /usr/lib/libiconv.2.dylib 0x7fff6fb36000 - 0x7fff6fd8dfff libicucore.A.dylib (64260.0.1) /usr/lib/libicucore.A.dylib 0x7fff6fda7000 - 0x7fff6fda8fff liblangid.dylib (133) /usr/lib/liblangid.dylib 0x7fff6fda9000 - 0x7fff6fdc1ff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib 0x7fff6fdd9000 - 0x7fff6fe80ff7 libmecab.dylib (883.11) /usr/lib/libmecab.dylib 0x7fff6fe81000 - 0x7fff700e3ff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib 0x7fff70450000 - 0x7fff7047ffff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib 0x7fff705af000 - 0x7fff70a2bff5 libnetwork.dylib (1880.120.4) /usr/lib/libnetwork.dylib 0x7fff70a2c000 - 0x7fff70a43fff libnetworkextension.dylib (1095.140.2) /usr/lib/libnetworkextension.dylib 0x7fff70acc000 - 0x7fff70afffde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib 0x7fff70b12000 - 0x7fff70b16fff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib 0x7fff70b19000 - 0x7fff70b4fff7 libpcap.A.dylib (89.120.1) /usr/lib/libpcap.A.dylib 0x7fff70b8f000 - 0x7fff70b9dff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib 0x7fff70bd3000 - 0x7fff70bebfff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib 0x7fff70bed000 - 0x7fff70c31ff7 libsandbox.1.dylib (1217.141.2) /usr/lib/libsandbox.1.dylib 0x7fff70c45000 - 0x7fff70c46ff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib 0x7fff70c47000 - 0x7fff70e31ff7 libsqlite3.dylib (308.6) /usr/lib/libsqlite3.dylib 0x7fff71027000 - 0x7fff71081ff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib 0x7fff71082000 - 0x7fff71085ffb libutil.dylib (57) /usr/lib/libutil.dylib 0x7fff71086000 - 0x7fff71093ff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib 0x7fff71099000 - 0x7fff7117bfff libxml2.2.dylib (33.8) /usr/lib/libxml2.2.dylib 0x7fff7117f000 - 0x7fff711a7fff libxslt.1.dylib (16.10) /usr/lib/libxslt.1.dylib 0x7fff711a8000 - 0x7fff711baff3 libz.1.dylib (76) /usr/lib/libz.1.dylib 0x7fff71a69000 - 0x7fff71a6eff3 libcache.dylib (83) /usr/lib/system/libcache.dylib 0x7fff71a6f000 - 0x7fff71a7afff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib 0x7fff71a7b000 - 0x7fff71a82fff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib 0x7fff71a83000 - 0x7fff71a8cff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib 0x7fff71a8d000 - 0x7fff71b1ffdb libcorecrypto.dylib (866.140.1) /usr/lib/system/libcorecrypto.dylib 0x7fff71c2c000 - 0x7fff71c6cff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib 0x7fff71c6d000 - 0x7fff71ca3fff libdyld.dylib (750.6) /usr/lib/system/libdyld.dylib 0x7fff71ca4000 - 0x7fff71ca4ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib 0x7fff71ca5000 - 0x7fff71cb1ff3 libkxld.dylib (6153.141.16) /usr/lib/system/libkxld.dylib 0x7fff71cb2000 - 0x7fff71cb2ff7 liblaunch.dylib (1738.140.2) /usr/lib/system/liblaunch.dylib 0x7fff71cb3000 - 0x7fff71cb8ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib 0x7fff71cb9000 - 0x7fff71cbbff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib 0x7fff71cbc000 - 0x7fff71cbdff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib 0x7fff71cbe000 - 0x7fff71cd5ff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib 0x7fff71cd6000 - 0x7fff71cd6ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib 0x7fff71cd7000 - 0x7fff71d5efff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib 0x7fff71d5f000 - 0x7fff71d62ffb libsystem_configuration.dylib (1061.141.1) /usr/lib/system/libsystem_configuration.dylib 0x7fff71d63000 - 0x7fff71d66fff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib 0x7fff71d67000 - 0x7fff71d6ffff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib 0x7fff71d70000 - 0x7fff71d77fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib 0x7fff71d78000 - 0x7fff71d79ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib 0x7fff71d7a000 - 0x7fff71dc7ff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib 0x7fff71dc8000 - 0x7fff71df4ff7 libsystem_kernel.dylib (6153.141.16) /usr/lib/system/libsystem_kernel.dylib 0x7fff71df5000 - 0x7fff71e3cfff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib 0x7fff71e3d000 - 0x7fff71e64fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib 0x7fff71e65000 - 0x7fff71e72ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff71e73000 - 0x7fff71e7cff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib 0x7fff71e7d000 - 0x7fff71e85fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib 0x7fff71e86000 - 0x7fff71e90fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib 0x7fff71e91000 - 0x7fff71e95ff3 libsystem_sandbox.dylib (1217.141.2) /usr/lib/system/libsystem_sandbox.dylib 0x7fff71e96000 - 0x7fff71e98fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib 0x7fff71e99000 - 0x7fff71ea0ffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib 0x7fff71ea1000 - 0x7fff71eb7ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib 0x7fff71eb9000 - 0x7fff71ebeff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff71ebf000 - 0x7fff71ef4ffe libxpc.dylib (1738.140.2) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 13 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 242506730 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=927.3M resident=0K(0%) swapped_out_or_unallocated=927.3M(100%) Writable regions: Total=1.4G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.4G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 256K 2 Activity Tracing 256K 1 CG backing stores 1760K 2 CG image 104K 7 CoreAnimation 104K 11 CoreGraphics 8K 1 CoreImage 24K 2 CoreServices 5784K 4 CoreUI image data 2228K 17 Foundation 4K 1 Kernel Alloc Once 8K 1 MALLOC 535.3M 295 MALLOC guard page 32K 7 MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated) MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated) OpenGL GLSL 512K 6 PROTECTED_MEMORY 4K 1 STACK GUARD 112K 28 Stack 164.7M 29 Stack Guard 56.0M 1 VM_ALLOCATE 248.8M 317 VM_ALLOCATE (reserved) 96.0M 1 reserved VM address space (unallocated) __DATA 61.1M 528 __DATA_CONST 128K 6 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 413.1M 136 __OBJC_RO 32.3M 1 __OBJC_RW 1908K 2 __TEXT 514.2M 495 __UNICODE 564K 1 mapped file 76.2M 39 shared memory 660K 20 =========== ======= ======= TOTAL 2.5G 1966 TOTAL, minus reserved VM space 2.1G 1966 Log: UCSF ChimeraX version: 1.1.1 (2020-10-07) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/hwang5/Documents/NCP-TBP/Figures/SHL+2/NTA3-SHL+2_refined28.pdb Chain information for NTA3-SHL+2_refined28.pdb #1 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available H | No description available I | No description available J | No description available K | No description available L | No description available M | No description available OpenGL version: 4.1 ATI-3.10.19 OpenGL renderer: AMD Radeon Pro 580X OpenGL Engine OpenGL vendor: ATI Technologies Inc.Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac19,1 Processor Name: 6-Core Intel Core i5 Processor Speed: 3,7 GHz Number of Processors: 1 Total Number of Cores: 6 L2 Cache (per Core): 256 KB L3 Cache: 9 MB Memory: 16 GB Boot ROM Version: 1554.80.3.0.0 SMC Version (system): 2.46f12 Software: System Software Overview: System Version: macOS 10.15.7 (19H524) Kernel Version: Darwin 19.6.0 Time since boot: 23 days 19:10 Graphics/Displays: Radeon Pro 580X: Chipset Model: Radeon Pro 580X Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 8 GB Vendor: AMD (0x1002) Device ID: 0x67df Revision ID: 0x00c0 ROM Revision: 113-D0008A-042 VBIOS Version: 113-D0008A1X-009 EFI Driver Version: 01.B1.042 Metal: Supported, feature set macOS GPUFamily2 v1 Displays: iMac: Display Type: Built-In Retina LCD Resolution: 5120 x 2880 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.9 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.0 Babel: 2.8.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.6.20 chardet: 3.0.4 ChimeraX-AddH: 2.1.3 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.6.1 ChimeraX-AtomSearch: 2.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.0.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.0 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.0 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.1.1 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.0.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-DataFormats: 1.0 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.0 ChimeraX-Help: 1.0 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.0 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.0 ChimeraX-Log: 1.1.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Map: 1.0.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.1 ChimeraX-MDcrds: 2.0 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.0 ChimeraX-mmCIF: 2.2 ChimeraX-MMTF: 2.0 ChimeraX-Modeller: 1.0 ChimeraX-ModelPanel: 1.0 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.0 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0 ChimeraX-OpenCommand: 1.2.1 ChimeraX-PDB: 2.1 ChimeraX-PDBBio: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0 ChimeraX-PubChem: 2.0 ChimeraX-Read-Pbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.0 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.0.4 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.0 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0 ChimeraX-ToolshedUtils: 1.0 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.2.3 ChimeraX-uniprot: 2.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.20 decorator: 4.4.2 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.16 imagecodecs: 2020.5.30 imagecodecs-lite: 2020.1.31 imagesize: 1.2.0 ipykernel: 5.3.0 ipython: 7.15.0 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.3 jupyter-core: 4.6.3 kiwisolver: 1.2.0 line-profiler: 2.1.2 lxml: 4.5.1 MarkupSafe: 1.1.1 matplotlib: 3.2.1 msgpack: 1.0.0 netifaces: 0.10.9 networkx: 2.4 numexpr: 2.7.1 numpy: 1.18.5 numpydoc: 1.0.0 openvr: 1.12.501 packaging: 20.4 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.1.2 pip: 20.2.2 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.7 psutil: 5.7.0 ptyprocess: 0.6.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.6.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.12.3 PyQt5-sip: 4.19.19 PyQtWebEngine-commercial: 5.12.1 python-dateutil: 2.8.1 pytz: 2020.1 pyzmq: 19.0.2 qtconsole: 4.7.4 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.4.1 setuptools: 49.4.0 sfftk-rw: 0.6.6.dev0 six: 1.15.0 snowballstemmer: 2.0.0 sortedcontainers: 2.2.2 Sphinx: 3.1.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.6.3 tinyarray: 1.2.2 tornado: 6.0.4 traitlets: 5.0.4 urllib3: 1.25.10 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.34.2 }}} " defect closed normal Graphics nonchimerax all ChimeraX