id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 4336 Listing desktop to save image: Operation not permitted chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Darwin-19.6.0-x86_64-i386-64bit ChimeraX Version: 0.92 (2020-02-01) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- note | Updating list of available bundles failed: Internal Server Error UCSF ChimeraX version: 0.92 (2020-02-01) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/purbashanandi/Downloads/cryosparc_P31_J123_005_volume_map_sharp.mrc Opened cryosparc_P31_J123_005_volume_map_sharp.mrc, grid size 240,240,240, pixel 1.3, shown at level 0.211, step 1, values float32 > set bgColor white > open ""/Users/purbashanandi/Dropbox (ASU)/Paper > p97-p47/linkermutant_030821/cryosparc_P31_J189_class_00_final_volume.mrc"" Opened cryosparc_P31_J189_class_00_final_volume.mrc, grid size 192,192,192, pixel 1.95, shown at level 0.153, step 1, values float32 > hide #!1 models > volume #2 level 0.231 > volume #2 level 0.171 > volume #2 level 0.2035 > volume #2 level 0.1885 > lighting simple > lighting soft > lighting full > volume #2 level 0.1935 > lighting full Traceback (most recent call last): File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 162, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 453, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1632, in run_provider return cls._get_func(api, ""run_provider"")(session, name, mgr, **kw) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/__init__.py"", line 52, in run_provider shortcuts.run_provider(session, name) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 1147, in run_provider keyboard_shortcuts(session).try_shortcut(name) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 373, in try_shortcut self.run_shortcut(keys) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 391, in run_shortcut sc.run(self.session, status = self._enabled) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 310, in run f(s) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 1073, in save_image path = unused_file_name(directory, basename, suffix) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 1093, in unused_file_name files = listdir(dir) PermissionError: [Errno 1] Operation not permitted: '/Users/purbashanandi/Desktop' PermissionError: [Errno 1] Operation not permitted: '/Users/purbashanandi/Desktop' File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 1093, in unused_file_name files = listdir(dir) See log for complete Python traceback. Traceback (most recent call last): File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 162, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 453, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1632, in run_provider return cls._get_func(api, ""run_provider"")(session, name, mgr, **kw) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/__init__.py"", line 52, in run_provider shortcuts.run_provider(session, name) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 1147, in run_provider keyboard_shortcuts(session).try_shortcut(name) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 373, in try_shortcut self.run_shortcut(keys) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 391, in run_shortcut sc.run(self.session, status = self._enabled) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 310, in run f(s) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 1073, in save_image path = unused_file_name(directory, basename, suffix) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 1093, in unused_file_name files = listdir(dir) PermissionError: [Errno 1] Operation not permitted: '/Users/purbashanandi/Desktop' PermissionError: [Errno 1] Operation not permitted: '/Users/purbashanandi/Desktop' File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 1093, in unused_file_name files = listdir(dir) See log for complete Python traceback. > volume #2 level 0.221 Traceback (most recent call last): File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 162, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 453, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1632, in run_provider return cls._get_func(api, ""run_provider"")(session, name, mgr, **kw) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/__init__.py"", line 52, in run_provider shortcuts.run_provider(session, name) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 1147, in run_provider keyboard_shortcuts(session).try_shortcut(name) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 373, in try_shortcut self.run_shortcut(keys) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 391, in run_shortcut sc.run(self.session, status = self._enabled) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 310, in run f(s) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 1073, in save_image path = unused_file_name(directory, basename, suffix) File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 1093, in unused_file_name files = listdir(dir) PermissionError: [Errno 1] Operation not permitted: '/Users/purbashanandi/Desktop' PermissionError: [Errno 1] Operation not permitted: '/Users/purbashanandi/Desktop' File ""/Volumes/ChimeraXInstaller/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 1093, in unused_file_name files = listdir(dir) See log for complete Python traceback. OpenGL version: 4.1 ATI-3.10.16 OpenGL renderer: AMD Radeon Pro 555 OpenGL Engine OpenGL vendor: ATI Technologies Inc. }}} " defect closed normal Platform duplicate Eric Pettersen all ChimeraX