id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 4303 Coulombic failure due to unexpected hydrogen name james.hooker17@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Darwin-20.2.0-x86_64-i386-64bit ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC) Description Tried to calculate the electrostatic surface of parts of PDB model 6H03. KeyError raised. Log: UCSF ChimeraX version: 1.1.1 (2020-10-07) © 2016-2020 Regents of the University of California. All rights reserved. > open ""/Users/james/Desktop/Project 1/J175/partial-model-in-map.cxs"" Log from Sun Feb 21 18:46:58 2021UCSF ChimeraX version: 1.1.1 (2020-10-07) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/james/Desktop/Project > 1/J175/cryosparc_P1_J175_005_volume_map.mrc"" Opened cryosparc_P1_J175_005_volume_map.mrc, grid size 512,512,512, pixel 0.829, shown at level 0.156, step 2, values float32 > open ""/Users/james/Desktop/Project 1/Coot/CD59/6h03.cif"" Summary of feedback from opening /Users/james/Desktop/Project 1/Coot/CD59/6h03.cif --- notes | Fetching CCD NAG from http://ligand- expo.rcsb.org/reports/N/NAG/NAG.cif Fetching CCD BMA from http://ligand-expo.rcsb.org/reports/B/BMA/BMA.cif 6h03.cif title: Open conformation of the membrane attack complex [more info...] Chain information for 6h03.cif #2 --- Chain | Description A | Complement C5,Complement C5 B | Complement component C6 C | Complement component C8 β chain D | Complement component C7 E | Complement component C8 γ chain F | Complement component C8 α chain G H I J K L M N O P Q R S T U V W X | Complement component C9 Non-standard residues in 6h03.cif #2 --- BMA — beta-D-mannopyranose (beta-D-mannose; D-mannose; mannose) NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE) > hide #!2 models > show #!2 models > ui tool show ""Fit in Map"" Fit molecule 6h03.cif (#2) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 102310 atoms average map value = 0.04612, steps = 236 shifted from previous position = 30.1 rotated from previous position = 12.2 degrees atoms outside contour = 92092, contour level = 0.15615 Position of 6h03.cif (#2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.98457646 -0.04305185 0.16957515 -21.25286647 0.02260904 0.99243295 0.12068835 -36.00398287 -0.17348782 -0.11499298 0.97809948 47.31504119 Axis -0.55932699 0.81416875 0.15582866 Axis point 258.77967435 0.00000000 182.02588351 Rotation angle (degrees) 12.16237852 Shift along axis -10.05297666 > select #2 102310 atoms, 104690 bonds, 41 pseudobonds, 12857 residues, 2 models selected > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" Fit molecule 6h03.cif (#2) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 102310 atoms average map value = 0.05197, steps = 580 shifted from previous position = 26.4 rotated from previous position = 27.1 degrees atoms outside contour = 90275, contour level = 0.15615 Position of 6h03.cif (#2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.86603229 -0.46451113 0.18497969 558.29623472 0.09296857 0.21391093 0.97241913 -90.45384202 -0.49126868 0.85934366 -0.14206883 163.67171438 Axis -0.12796047 0.76526818 0.63086506 Axis point 300.08268141 0.00000000 34.89190833 Rotation angle (degrees) 153.77881950 Shift along axis -37.40652666 Fit map 6h03.cif map 5 in map cryosparc_P1_J175_005_volume_map.mrc using 403939 points correlation = 0.3893, correlation about mean = 0.01334, overlap = 7702 steps = 312, shift = 20.9, angle = 18.6 degrees Position of 6h03.cif map 5 (#3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.89642719 -0.24189122 0.37135821 466.73752100 0.24723822 0.42247781 0.87200101 -172.35371691 -0.36781999 0.87349936 -0.31891584 159.12443470 Axis 0.00169046 0.83394794 0.55184053 Axis point 260.10150872 0.00000000 71.17885452 Rotation angle (degrees) 153.69304157 Shift along axis -55.13371626 Average map value = 0.05555 for 102310 atoms, 89244 outside contour > show #!3 models > hide #!2 models Fit map 6h03.cif map 5 in map cryosparc_P1_J175_005_volume_map.mrc using 403939 points correlation = 0.3893, correlation about mean = 0.01333, overlap = 7702 steps = 60, shift = 0.0133, angle = 0.00343 degrees Position of 6h03.cif map 5 (#3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.89644052 -0.24189572 0.37132311 466.74325392 0.24722320 0.42242860 0.87202911 -172.33466309 -0.36779762 0.87352191 -0.31887988 159.09938471 Axis 0.00168430 0.83393367 0.55186212 Axis point 260.09864373 0.00000000 71.16578331 Rotation angle (degrees) 153.69475924 Shift along axis -55.12861815 Average map value = 0.05555 for 102310 atoms, 89234 outside contour Fit map 6h03.cif map 4 in map cryosparc_P1_J175_005_volume_map.mrc using 653491 points correlation = 0.3722, correlation about mean = 0.006427, overlap = 1.505e+04 steps = 48, shift = 0.11, angle = 0.118 degrees Position of 6h03.cif map 4 (#3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.89708393 -0.24224498 0.36953726 467.43745447 0.24529203 0.42259472 0.87249385 -171.97652496 -0.36752175 0.87334476 -0.31968217 159.37202313 Axis 0.00096288 0.83404774 0.55169144 Axis point 260.31239515 0.00000000 71.28912877 Rotation angle (degrees) 153.77759986 Shift along axis -55.06236565 Average map value = 0.05558 for 102310 atoms, 89209 outside contour > show #!3 models > show #!2 models > hide #!3 models Fit map 6h03.cif map 4 in map cryosparc_P1_J175_005_volume_map.mrc using 653491 points correlation = 0.4221, correlation about mean = 0.007103, overlap = 1.611e+04 steps = 1212, shift = 96.4, angle = 61.9 degrees Position of 6h03.cif map 4 (#3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.26551310 0.26737090 0.92629131 -29.30163373 0.74298765 0.66901032 0.01986315 -94.93579495 -0.61438762 0.69349693 -0.37628428 280.59723236 Axis 0.38548876 0.88165769 0.27217297 Axis point 101.33452077 0.00000000 162.32683527 Rotation angle (degrees) 119.10381312 Shift along axis -18.62534192 Average map value = 0.0594 for 102310 atoms, 90727 outside contour > ui tool show ""Show Sequence Viewer"" > sequence chain /X Alignment identifier is 2/X > select /X 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!2 & sel) > delete bonds (#!2 & sel) > select /W 3969 atoms, 4058 bonds, 1 pseudobond, 503 residues, 2 models selected > select /V 3979 atoms, 4069 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!2 & sel) > delete bonds (#!2 & sel) > select /W 3969 atoms, 4058 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!2 & sel) > delete bonds (#!2 & sel) > select /U 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!2 & sel) > delete bonds (#!2 & sel) > lighting soft > select /T 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!2 & sel) > delete bonds (#!2 & sel) > select /S 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!2 & sel) > delete bonds (#!2 & sel) > select /R 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!2 & sel) > delete bonds (#!2 & sel) > select /Q 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!2 & sel) > delete bonds (#!2 & sel) > select /P 4005 atoms, 4094 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!2 & sel) > delete bonds (#!2 & sel) > undo Undo failed, probably because structures have been modified. > hide #!2 models > show #!2 models > select #2 66327 atoms, 67890 bonds, 32 pseudobonds, 8330 residues, 2 models selected > close #2 > select #3 2 models selected > close #3 > ui mousemode right translate > open ""/Users/james/Desktop/Project 1/Coot/CD59/6h03.cif"" 6h03.cif title: Open conformation of the membrane attack complex [more info...] Chain information for 6h03.cif #2 --- Chain | Description A | Complement C5,Complement C5 B | Complement component C6 C | Complement component C8 β chain D | Complement component C7 E | Complement component C8 γ chain F | Complement component C8 α chain G H I J K L M N O P Q R S T U V W X | Complement component C9 Non-standard residues in 6h03.cif #2 --- BMA — beta-D-mannopyranose (beta-D-mannose; D-mannose; mannose) NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE) > select /X 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > split #2 chains Split 6h03.cif (#2) into 45 models Chain information for 6h03.cif A #2.1 --- Chain | Description A | No description available Chain information for 6h03.cif B #2.2 --- Chain | Description B | No description available Chain information for 6h03.cif C #2.3 --- Chain | Description C | No description available Chain information for 6h03.cif D #2.4 --- Chain | Description D | No description available Chain information for 6h03.cif E #2.5 --- Chain | Description E | No description available Chain information for 6h03.cif F #2.6 --- Chain | Description F | No description available Chain information for 6h03.cif G #2.7 --- Chain | Description G | No description available Chain information for 6h03.cif H #2.8 --- Chain | Description H | No description available Chain information for 6h03.cif I #2.9 --- Chain | Description I | No description available Chain information for 6h03.cif J #2.10 --- Chain | Description J | No description available Chain information for 6h03.cif K #2.11 --- Chain | Description K | No description available Chain information for 6h03.cif L #2.12 --- Chain | Description L | No description available Chain information for 6h03.cif M #2.13 --- Chain | Description M | No description available Chain information for 6h03.cif N #2.14 --- Chain | Description N | No description available Chain information for 6h03.cif O #2.15 --- Chain | Description O | No description available Chain information for 6h03.cif P #2.16 --- Chain | Description P | No description available Chain information for 6h03.cif Q #2.17 --- Chain | Description Q | No description available Chain information for 6h03.cif R #2.18 --- Chain | Description R | No description available Chain information for 6h03.cif S #2.19 --- Chain | Description S | No description available Chain information for 6h03.cif T #2.20 --- Chain | Description T | No description available Chain information for 6h03.cif U #2.21 --- Chain | Description U | No description available Chain information for 6h03.cif V #2.22 --- Chain | Description V | No description available Chain information for 6h03.cif W #2.23 --- Chain | Description W | No description available Chain information for 6h03.cif X #2.24 --- Chain | Description X | No description available > hide #2.45 models > show #2.45 models > hide #!2.1 models > show #!2.1 models > select #2.6 4031 atoms, 4123 bonds, 5 pseudobonds, 512 residues, 2 models selected > ~select #2.6 Nothing selected > select #2.24 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > select #2.23 3969 atoms, 4058 bonds, 1 pseudobond, 503 residues, 2 models selected > select #2.24 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > select #2.23 3969 atoms, 4058 bonds, 1 pseudobond, 503 residues, 2 models selected > select #2.24 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > select #2.24,2.23 Nothing selected > select #2/X,W,V 11953 atoms, 12222 bonds, 3 pseudobonds, 1509 residues, 6 models selected > select #2/D 5129 atoms, 5268 bonds, 3 pseudobonds, 657 residues, 2 models selected > select #2/A 9686 atoms, 9905 bonds, 5 pseudobonds, 1223 residues, 2 models selected > select #2/B 5427 atoms, 5563 bonds, 6 pseudobonds, 690 residues, 2 models selected > select #2/C 4119 atoms, 4223 bonds, 3 pseudobonds, 513 residues, 2 models selected > select #2/D 5129 atoms, 5268 bonds, 3 pseudobonds, 657 residues, 2 models selected > select #2/E 1295 atoms, 1324 bonds, 1 pseudobond, 165 residues, 2 models selected > select #2/F 4031 atoms, 4123 bonds, 5 pseudobonds, 512 residues, 2 models selected > select #2/G 4005 atoms, 4094 bonds, 1 pseudobond, 503 residues, 2 models selected > select #2/H 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > select #2/I 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > select #2/J 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > select #2/K 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > select #2/K-Z 56071 atoms, 57332 bonds, 14 pseudobonds, 7047 residues, 30 models selected > select #2/K-Y 56043 atoms, 57303 bonds, 14 pseudobonds, 7045 residues, 29 models selected > select #2/K-X 56004 atoms, 57262 bonds, 14 pseudobonds, 7042 residues, 28 models selected > select #2/K-W 51999 atoms, 53167 bonds, 13 pseudobonds, 6539 residues, 26 models selected > select #2/K-X 56004 atoms, 57262 bonds, 14 pseudobonds, 7042 residues, 28 models selected > hide #!2.11 models > show #!2.11 models > hide #!2.11 models > show #!2.11 models > hide #!2.12 models > show #!2.12 models > hide #!2.13 models > show #!2.13 models > hide #!2.14 models > show #!2.14 models > hide #!2.15 models > show #!2.15 models > hide #!2.16 models > show #!2.16 models > hide #!2.16 models > show #!2.16 models > select #2/K-O,Q-X 51999 atoms, 53168 bonds, 13 pseudobonds, 6539 residues, 26 models selected > hide #!2.17 models > show #!2.17 models > hide #!2.17 models > show #!2.17 models > hide #!2.18 models > show #!2.18 models > hide #!2.19 models > show #!2.19 models > hide #!2.20 models > show #!2.20 models > hide #!2.21 models > show #!2.21 models > hide #!2.22 models > show #!2.22 models > hide #!2.23 models > show #!2.23 models > hide #!2.24 models > show #!2.24 models > delete atoms (#!2.11-15,17-24 & sel) > delete bonds (#!2.11-15,17-24 & sel) > select #2.45 28 atoms, 29 bonds, 2 residues, 1 model selected > select #2.44 28 atoms, 29 bonds, 2 residues, 1 model selected > select #2/a-z 50311 atoms, 51500 bonds, 28 pseudobonds, 6318 residues, 43 models selected > select #2/a 9714 atoms, 9934 bonds, 5 pseudobonds, 1225 residues, 3 models selected > ~select #2.27 9686 atoms, 9905 bonds, 5 pseudobonds, 1223 residues, 2 models selected > select #2.27 28 atoms, 29 bonds, 2 residues, 1 model selected > select #2.28 28 atoms, 29 bonds, 2 residues, 1 model selected > select #2.27 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.27 Nothing selected > select #2.28 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.28 Nothing selected > select #2.29 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.29 Nothing selected > select #2.30 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.30 Nothing selected > select #2.31 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.31 Nothing selected > select #2.32 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.32 Nothing selected > select #2.33 28 atoms, 29 bonds, 2 residues, 1 model selected > delete atoms sel > delete bonds sel > select #2.45 28 atoms, 29 bonds, 2 residues, 1 model selected > delete atoms sel > delete bonds sel > select #2.44 28 atoms, 29 bonds, 2 residues, 1 model selected > delete atoms sel > delete bonds sel > select #2.43 28 atoms, 29 bonds, 2 residues, 1 model selected > delete atoms sel > delete bonds sel > select #2.42 28 atoms, 29 bonds, 2 residues, 1 model selected > delete atoms sel > delete bonds sel > select #2.41 28 atoms, 29 bonds, 2 residues, 1 model selected > delete atoms sel > delete bonds sel > select #2.40 28 atoms, 29 bonds, 2 residues, 1 model selected > delete atoms sel > delete bonds sel > select #2.39 28 atoms, 29 bonds, 2 residues, 1 model selected > delete atoms sel > delete bonds sel > select #2.38 28 atoms, 29 bonds, 2 residues, 1 model selected > delete atoms sel > delete bonds sel > select #2.37 28 atoms, 29 bonds, 2 residues, 1 model selected > delete atoms sel > delete bonds sel > select #2.36 28 atoms, 29 bonds, 2 residues, 1 model selected > delete atoms sel > delete bonds sel > select #2.35 28 atoms, 29 bonds, 2 residues, 1 model selected > delete atoms sel > delete bonds sel > select #2.34 28 atoms, 29 bonds, 2 residues, 1 model selected > delete atoms sel > delete bonds sel > select #2.32 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.32 Nothing selected > select #2.31 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.31 Nothing selected > select #2.30 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.30 Nothing selected > select #2.29 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.29 Nothing selected > select #2.29 28 atoms, 29 bonds, 2 residues, 1 model selected > select #2.28 28 atoms, 29 bonds, 2 residues, 1 model selected > select #2.27 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.27 Nothing selected > select #2.26 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.26 Nothing selected > select #2.25 39 atoms, 41 bonds, 3 residues, 1 model selected > select #2.16 4005 atoms, 4094 bonds, 1 pseudobond, 503 residues, 2 models selected > select #2.10 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > ~select #2.10 Nothing selected > save combined.pdb #2 > open /Users/james/Desktop/combined.pdb Chain information for combined.pdb --- Chain | Description 3.1/A | No description available 3.2/B | No description available 3.3/C | No description available 3.4/D | No description available 3.5/E | No description available 3.6/F | No description available 3.7/G 3.8/H 3.9/I 3.10/J 3.11/P | No description available > hide #!2 models > select #3 49947 atoms, 51123 bonds, 55 pseudobonds, 6292 residues, 31 models selected > fitmap #3 #1 Missing required ""in_map"" argument > fitmap #3 inMap #1 Fit molecules combined.pdb (#3.1), combined.pdb (#3.2), combined.pdb (#3.3), combined.pdb (#3.4), combined.pdb (#3.5), combined.pdb (#3.6), combined.pdb (#3.7), combined.pdb (#3.8), combined.pdb (#3.9), combined.pdb (#3.10), combined.pdb (#3.11), combined.pdb (#3.12), combined.pdb (#3.13), combined.pdb (#3.14), combined.pdb (#3.15), combined.pdb (#3.16), combined.pdb (#3.17), combined.pdb (#3.18), combined.pdb (#3.19) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 49947 atoms average map value = 0.1246, steps = 1596 shifted from previous position = 80.3 rotated from previous position = 91.6 degrees atoms outside contour = 34701, contour level = 0.15615 Position of combined.pdb (#3.1) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.5) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.6) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.7) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.8) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.9) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.10) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.11) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.12) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.13) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.14) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.15) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.16) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.17) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.18) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of combined.pdb (#3.19) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 > ~select #3 Nothing selected > select #3 49947 atoms, 51123 bonds, 55 pseudobonds, 6292 residues, 31 models selected > cartoon hide (#3.12-19#!3.1-11 & sel) > hide #* target a > show (#3.12-19#!3.1-11 & sel) target ab > style (#3.12-19#!3.1-11 & sel) sphere Changed 49947 atom styles > show #!2 models > hide #!3 models > ~select #3 Nothing selected > select #2 49947 atoms, 51123 bonds, 28 pseudobonds, 6292 residues, 31 models selected > style (#2.25-32#!2.1-10,16 & sel) sphere Changed 49947 atom styles > hide #* target a > show (#2.25-32#!2.1-10,16 & sel) target ab > fitmap #2 inMap #1 Fit molecules 6h03.cif A (#2.1), 6h03.cif B (#2.2), 6h03.cif C (#2.3), 6h03.cif D (#2.4), 6h03.cif E (#2.5), 6h03.cif F (#2.6), 6h03.cif G (#2.7), 6h03.cif H (#2.8), 6h03.cif I (#2.9), 6h03.cif J (#2.10), 6h03.cif P (#2.16), 6h03.cif Y (#2.25), 6h03.cif Z (#2.26), 6h03.cif a (#2.27), 6h03.cif b (#2.28), 6h03.cif c (#2.29), 6h03.cif d (#2.30), 6h03.cif e (#2.31), 6h03.cif f (#2.32) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 49947 atoms average map value = 0.1246, steps = 1596 shifted from previous position = 80.3 rotated from previous position = 91.6 degrees atoms outside contour = 34701, contour level = 0.15615 Position of 6h03.cif A (#2.1) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif B (#2.2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif C (#2.3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif D (#2.4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif E (#2.5) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif F (#2.6) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif G (#2.7) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif H (#2.8) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif I (#2.9) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif J (#2.10) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif P (#2.16) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif Y (#2.25) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif Z (#2.26) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif a (#2.27) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif b (#2.28) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif c (#2.29) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif d (#2.30) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif e (#2.31) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 Position of 6h03.cif f (#2.32) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00252387 -0.12519362 0.99212912 56.51994505 0.42912669 0.89600160 0.11415524 -180.22574515 -0.90324079 0.42603719 0.05146253 310.42575915 Axis 0.15600010 0.94804428 0.27726524 Axis point 213.16823362 0.00000000 146.48723534 Rotation angle (degrees) 91.57754443 Shift along axis -75.97459681 > ui mousemode right ""rotate selected models"" > lighting simple > ui mousemode right translate > ui mousemode right ""translate selected models"" > fitmap #2 inMap #1 Fit molecules 6h03.cif A (#2.1), 6h03.cif B (#2.2), 6h03.cif C (#2.3), 6h03.cif D (#2.4), 6h03.cif E (#2.5), 6h03.cif F (#2.6), 6h03.cif G (#2.7), 6h03.cif H (#2.8), 6h03.cif I (#2.9), 6h03.cif J (#2.10), 6h03.cif P (#2.16), 6h03.cif Y (#2.25), 6h03.cif Z (#2.26), 6h03.cif a (#2.27), 6h03.cif b (#2.28), 6h03.cif c (#2.29), 6h03.cif d (#2.30), 6h03.cif e (#2.31), 6h03.cif f (#2.32) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 49947 atoms average map value = 0.1501, steps = 492 shifted from previous position = 43.1 rotated from previous position = 34 degrees atoms outside contour = 30634, contour level = 0.15615 Position of 6h03.cif A (#2.1) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif B (#2.2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif C (#2.3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif D (#2.4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif E (#2.5) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif F (#2.6) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif G (#2.7) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif H (#2.8) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif I (#2.9) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif J (#2.10) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif P (#2.16) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif Y (#2.25) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif Z (#2.26) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif a (#2.27) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif b (#2.28) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif c (#2.29) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif d (#2.30) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif e (#2.31) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Position of 6h03.cif f (#2.32) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.21813011 0.38856341 0.89523055 -144.74046275 0.49249688 0.74811673 -0.44471135 -73.35708776 -0.84253550 0.53790319 -0.02817949 305.15461403 Axis 0.49154300 0.86929992 0.05199167 Axis point 121.98498938 -0.00000000 202.85129157 Rotation angle (degrees) 91.77452345 Shift along axis -119.04997260 Fit map map 4 in map cryosparc_P1_J175_005_volume_map.mrc using 320421 points correlation = 0.5858, correlation about mean = 0.05282, overlap = 2.05e+04 steps = 480, shift = 53.1, angle = 12.4 degrees Position of map 4 (#4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.34171599 0.49564904 0.79847493 -176.68233320 0.35125511 0.72068769 -0.59768646 -45.69283971 -0.87169377 0.48470741 0.07217125 319.69080217 Axis 0.54242627 0.83698126 -0.07236097 Axis point 123.48722863 0.00000000 216.28083139 Rotation angle (degrees) 86.14179711 Shift along axis -157.21432497 Average map value = 0.01498 for 49947 atoms, 49941 outside contour > show #!4 models Fit map map 4 in map cryosparc_P1_J175_005_volume_map.mrc using 320421 points correlation = 0.5858, correlation about mean = 0.05284, overlap = 2.05e+04 steps = 708, shift = 0.0104, angle = 0.00642 degrees Position of map 4 (#4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.34166220 0.49566684 0.79848690 -176.67236749 0.35134320 0.72064777 -0.59768282 -45.71187985 -0.87167935 0.48474857 0.07206892 319.69564427 Axis 0.54244148 0.83697449 -0.07232526 Axis point 123.48770721 0.00000000 216.26957546 Rotation angle (degrees) 86.14742590 Shift along axis -157.21616798 Average map value = 0.01498 for 49947 atoms, 49941 outside contour > ~select #2 Nothing selected > select #3 49947 atoms, 51123 bonds, 55 pseudobonds, 6292 residues, 31 models selected > show #!3 models > hide #!3 models > close #3 > select #2 49947 atoms, 51123 bonds, 28 pseudobonds, 6292 residues, 31 models selected > select #4 2 models selected > select #2 49947 atoms, 51123 bonds, 28 pseudobonds, 6292 residues, 31 models selected > select #4 2 models selected > close #4 > select #2 49947 atoms, 51123 bonds, 28 pseudobonds, 6292 residues, 31 models selected Fit map map 4 in map cryosparc_P1_J175_005_volume_map.mrc using 320392 points correlation = 0.7581, correlation about mean = 0.2533, overlap = 3.436e+04 steps = 848, shift = 112, angle = 25.3 degrees Position of map 4 (#3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.26158434 0.81273497 0.52061069 -173.73015236 0.31458275 0.43814523 -0.84206084 -6.12936570 -0.91247538 0.38404508 -0.14106048 350.61274930 Axis 0.62854692 0.73465255 -0.25537112 Axis point 78.20117447 0.00000000 199.24910081 Rotation angle (degrees) 102.74812121 Shift along axis -203.23687648 Average map value = 0.0003691 for 44943 atoms, 49947 outside contour > select #3 2 models selected > ~select #3 Nothing selected > show #!3 models > select #2 49947 atoms, 51123 bonds, 28 pseudobonds, 6292 residues, 31 models selected > hide #!3 models Fit molecules 6h03.cif A (#2.1), 6h03.cif B (#2.2), 6h03.cif C (#2.3), 6h03.cif D (#2.4), 6h03.cif E (#2.5), 6h03.cif F (#2.6), 6h03.cif G (#2.7), 6h03.cif H (#2.8), 6h03.cif I (#2.9), 6h03.cif J (#2.10), 6h03.cif P (#2.16), 6h03.cif Y (#2.25), 6h03.cif Z (#2.26), 6h03.cif a (#2.27), 6h03.cif b (#2.28), 6h03.cif c (#2.29), 6h03.cif d (#2.30), 6h03.cif e (#2.31), 6h03.cif f (#2.32) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 49947 atoms average map value = 0.2803, steps = 1624 shifted from previous position = 208 rotated from previous position = 22.8 degrees atoms outside contour = 15564, contour level = 0.15615 Position of 6h03.cif A (#2.1) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif B (#2.2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif C (#2.3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif D (#2.4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif E (#2.5) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif F (#2.6) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif G (#2.7) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif H (#2.8) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif I (#2.9) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif J (#2.10) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif P (#2.16) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif Y (#2.25) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif Z (#2.26) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif a (#2.27) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif b (#2.28) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif c (#2.29) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif d (#2.30) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif e (#2.31) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 Position of 6h03.cif f (#2.32) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11384702 0.88588334 0.44972165 84.61520873 0.24551735 0.46371167 -0.85128886 -111.02869707 -0.96268379 0.01349777 -0.27029192 484.05809660 Axis 0.48703460 0.79544514 -0.36064433 Axis point 230.73896491 0.00000000 143.25996456 Rotation angle (degrees) 117.40089364 Shift along axis -221.67951126 > ~select #2.25 49908 atoms, 51082 bonds, 28 pseudobonds, 6289 residues, 30 models selected > select #2 49947 atoms, 51123 bonds, 28 pseudobonds, 6292 residues, 31 models selected > ~select #2 Nothing selected > select #2.32 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.32 Nothing selected > select #2.31 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.31 Nothing selected > select #2.30 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.30 Nothing selected > select #2.29 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.29 Nothing selected > select #2.16 4005 atoms, 4094 bonds, 1 pseudobond, 503 residues, 2 models selected > ~select #2.16 Nothing selected > select #2.10 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!2.10 & sel) > delete bonds (#!2.10 & sel) > select #2.30 28 atoms, 29 bonds, 2 residues, 1 model selected > ~select #2.30 Nothing selected > ui mousemode right select > select #2.32/f:2@O4 1 atom, 1 residue, 1 model selected > select #2.32 28 atoms, 29 bonds, 2 residues, 1 model selected > delete atoms sel > delete bonds sel > select #2 45914 atoms, 46999 bonds, 27 pseudobonds, 5787 residues, 28 models selected Fit molecules 6h03.cif A (#2.1), 6h03.cif B (#2.2), 6h03.cif C (#2.3), 6h03.cif D (#2.4), 6h03.cif E (#2.5), 6h03.cif F (#2.6), 6h03.cif G (#2.7), 6h03.cif H (#2.8), 6h03.cif I (#2.9), 6h03.cif P (#2.16), 6h03.cif Y (#2.25), 6h03.cif Z (#2.26), 6h03.cif a (#2.27), 6h03.cif b (#2.28), 6h03.cif c (#2.29), 6h03.cif d (#2.30), 6h03.cif e (#2.31) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 45914 atoms average map value = -0.001009, steps = 524 shifted from previous position = 18 rotated from previous position = 10.1 degrees atoms outside contour = 45914, contour level = 0.15615 Position of 6h03.cif A (#2.1) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 Position of 6h03.cif B (#2.2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 Position of 6h03.cif C (#2.3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 Position of 6h03.cif D (#2.4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 Position of 6h03.cif E (#2.5) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 Position of 6h03.cif F (#2.6) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 Position of 6h03.cif G (#2.7) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 Position of 6h03.cif H (#2.8) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 Position of 6h03.cif I (#2.9) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 Position of 6h03.cif P (#2.16) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 Position of 6h03.cif Y (#2.25) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 Position of 6h03.cif Z (#2.26) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 Position of 6h03.cif a (#2.27) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 Position of 6h03.cif b (#2.28) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 Position of 6h03.cif c (#2.29) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 Position of 6h03.cif d (#2.30) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 Position of 6h03.cif e (#2.31) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.11669894 0.92925741 0.35051679 65.04743760 0.38709214 0.36757528 -0.84560516 -157.20794121 -0.91462617 0.03700107 -0.40260389 442.30872062 Axis 0.53979017 0.77374452 -0.33158103 Axis point 209.72186513 0.00000000 123.46386529 Rotation angle (degrees) 125.16014549 Shift along axis -233.18799799 > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > ui mousemode right translate > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" Fit molecules 6h03.cif A (#2.1), 6h03.cif B (#2.2), 6h03.cif C (#2.3), 6h03.cif D (#2.4), 6h03.cif E (#2.5), 6h03.cif F (#2.6), 6h03.cif G (#2.7), 6h03.cif H (#2.8), 6h03.cif I (#2.9), 6h03.cif P (#2.16), 6h03.cif Y (#2.25), 6h03.cif Z (#2.26), 6h03.cif a (#2.27), 6h03.cif b (#2.28), 6h03.cif c (#2.29), 6h03.cif d (#2.30), 6h03.cif e (#2.31) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 45914 atoms average map value = 0.1835, steps = 300 shifted from previous position = 9.22 rotated from previous position = 9.59 degrees atoms outside contour = 23892, contour level = 0.15615 Position of 6h03.cif A (#2.1) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Position of 6h03.cif B (#2.2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Position of 6h03.cif C (#2.3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Position of 6h03.cif D (#2.4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Position of 6h03.cif E (#2.5) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Position of 6h03.cif F (#2.6) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Position of 6h03.cif G (#2.7) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Position of 6h03.cif H (#2.8) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Position of 6h03.cif I (#2.9) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Position of 6h03.cif P (#2.16) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Position of 6h03.cif Y (#2.25) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Position of 6h03.cif Z (#2.26) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Position of 6h03.cif a (#2.27) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Position of 6h03.cif b (#2.28) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Position of 6h03.cif c (#2.29) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Position of 6h03.cif d (#2.30) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Position of 6h03.cif e (#2.31) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 134.12134594 0.35205217 0.44064088 -0.82576927 -158.75309150 -0.89370285 -0.10390811 -0.43646113 461.52726722 Axis 0.46820246 0.81135490 -0.34998526 Axis point 223.69373288 0.00000000 126.68423554 Rotation angle (degrees) 129.56650900 Shift along axis -227.53689631 Fit molecules 6h03.cif A (#2.1), 6h03.cif B (#2.2), 6h03.cif C (#2.3), 6h03.cif D (#2.4), 6h03.cif E (#2.5), 6h03.cif F (#2.6), 6h03.cif G (#2.7), 6h03.cif H (#2.8), 6h03.cif I (#2.9), 6h03.cif P (#2.16), 6h03.cif Y (#2.25), 6h03.cif Z (#2.26), 6h03.cif a (#2.27), 6h03.cif b (#2.28), 6h03.cif c (#2.29), 6h03.cif d (#2.30), 6h03.cif e (#2.31) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 45914 atoms average map value = 0.13, steps = 228 shifted from previous position = 4.23e-13 rotated from previous position = 27.7 degrees atoms outside contour = 29732, contour level = 0.15615 Position of 6h03.cif A (#2.1) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif B (#2.2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif C (#2.3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif D (#2.4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif E (#2.5) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif F (#2.6) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif G (#2.7) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif H (#2.8) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif I (#2.9) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif P (#2.16) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif Y (#2.25) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif Z (#2.26) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif a (#2.27) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif b (#2.28) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif c (#2.29) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif d (#2.30) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif e (#2.31) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Fit molecules 6h03.cif A (#2.1), 6h03.cif B (#2.2), 6h03.cif C (#2.3), 6h03.cif D (#2.4), 6h03.cif E (#2.5), 6h03.cif F (#2.6), 6h03.cif G (#2.7), 6h03.cif H (#2.8), 6h03.cif I (#2.9), 6h03.cif P (#2.16), 6h03.cif Y (#2.25), 6h03.cif Z (#2.26), 6h03.cif a (#2.27), 6h03.cif b (#2.28), 6h03.cif c (#2.29), 6h03.cif d (#2.30), 6h03.cif e (#2.31) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 45914 atoms average map value = 0.13, steps = 228 shifted from previous position = 4.23e-13 rotated from previous position = 27.7 degrees atoms outside contour = 29732, contour level = 0.15615 Position of 6h03.cif A (#2.1) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif B (#2.2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif C (#2.3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif D (#2.4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif E (#2.5) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif F (#2.6) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif G (#2.7) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif H (#2.8) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif I (#2.9) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif P (#2.16) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif Y (#2.25) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif Z (#2.26) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif a (#2.27) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif b (#2.28) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif c (#2.29) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif d (#2.30) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Position of 6h03.cif e (#2.31) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.56495386 0.82511442 0.00365092 187.83897407 0.51627811 0.35693901 -0.77849307 -182.81709898 -0.64364902 -0.43792777 -0.62764258 436.23784511 Axis 0.42894879 0.81528719 -0.38898551 Axis point 185.63001803 0.00000000 137.69263890 Rotation angle (degrees) 156.61069102 Shift along axis -238.16533782 Fit molecules 6h03.cif A (#2.1), 6h03.cif B (#2.2), 6h03.cif C (#2.3), 6h03.cif D (#2.4), 6h03.cif E (#2.5), 6h03.cif F (#2.6), 6h03.cif G (#2.7), 6h03.cif H (#2.8), 6h03.cif I (#2.9), 6h03.cif P (#2.16), 6h03.cif Y (#2.25), 6h03.cif Z (#2.26), 6h03.cif a (#2.27), 6h03.cif b (#2.28), 6h03.cif c (#2.29), 6h03.cif d (#2.30), 6h03.cif e (#2.31) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 45914 atoms average map value = 0.1464, steps = 124 shifted from previous position = 27.4 rotated from previous position = 0 degrees atoms outside contour = 29197, contour level = 0.15615 Position of 6h03.cif A (#2.1) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Position of 6h03.cif B (#2.2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Position of 6h03.cif C (#2.3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Position of 6h03.cif D (#2.4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Position of 6h03.cif E (#2.5) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Position of 6h03.cif F (#2.6) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Position of 6h03.cif G (#2.7) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Position of 6h03.cif H (#2.8) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Position of 6h03.cif I (#2.9) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Position of 6h03.cif P (#2.16) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Position of 6h03.cif Y (#2.25) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Position of 6h03.cif Z (#2.26) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Position of 6h03.cif a (#2.27) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Position of 6h03.cif b (#2.28) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Position of 6h03.cif c (#2.29) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Position of 6h03.cif d (#2.30) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Position of 6h03.cif e (#2.31) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.27812674 0.89164944 0.35722094 139.84734674 0.35205217 0.44064088 -0.82576927 -131.95124787 -0.89370285 -0.10390811 -0.43646113 462.32962316 Axis 0.46820246 0.81135490 -0.34998526 Axis point 221.50886836 0.00000000 134.48513750 Rotation angle (degrees) 129.56650900 Shift along axis -203.39097423 Fit molecules 6h03.cif A (#2.1), 6h03.cif B (#2.2), 6h03.cif C (#2.3), 6h03.cif D (#2.4), 6h03.cif E (#2.5), 6h03.cif F (#2.6), 6h03.cif G (#2.7), 6h03.cif H (#2.8), 6h03.cif I (#2.9), 6h03.cif P (#2.16), 6h03.cif Y (#2.25), 6h03.cif Z (#2.26), 6h03.cif a (#2.27), 6h03.cif b (#2.28), 6h03.cif c (#2.29), 6h03.cif d (#2.30), 6h03.cif e (#2.31) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 45914 atoms average map value = 0.09127, steps = 252 shifted from previous position = 5.16e-13 rotated from previous position = 26.2 degrees atoms outside contour = 34144, contour level = 0.15615 Position of 6h03.cif A (#2.1) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 Position of 6h03.cif B (#2.2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 Position of 6h03.cif C (#2.3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 Position of 6h03.cif D (#2.4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 Position of 6h03.cif E (#2.5) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 Position of 6h03.cif F (#2.6) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 Position of 6h03.cif G (#2.7) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 Position of 6h03.cif H (#2.8) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 Position of 6h03.cif I (#2.9) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 Position of 6h03.cif P (#2.16) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 Position of 6h03.cif Y (#2.25) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 Position of 6h03.cif Z (#2.26) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 Position of 6h03.cif a (#2.27) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 Position of 6h03.cif b (#2.28) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 Position of 6h03.cif c (#2.29) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 Position of 6h03.cif d (#2.30) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 Position of 6h03.cif e (#2.31) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 281.04541069 0.35227640 0.57786714 -0.73618674 -154.78419284 -0.65843369 -0.40598841 -0.63374954 445.13504829 Axis 0.32406701 0.87926512 -0.34910374 Axis point 227.46636272 0.00000000 137.96311011 Rotation angle (degrees) 149.37213517 Shift along axis -200.41710858 > cofr sel Fit molecules 6h03.cif A (#2.1), 6h03.cif B (#2.2), 6h03.cif C (#2.3), 6h03.cif D (#2.4), 6h03.cif E (#2.5), 6h03.cif F (#2.6), 6h03.cif G (#2.7), 6h03.cif H (#2.8), 6h03.cif I (#2.9), 6h03.cif P (#2.16), 6h03.cif Y (#2.25), 6h03.cif Z (#2.26), 6h03.cif a (#2.27), 6h03.cif b (#2.28), 6h03.cif c (#2.29), 6h03.cif d (#2.30), 6h03.cif e (#2.31) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 45914 atoms average map value = 0.04706, steps = 624 shifted from previous position = 6.49e-13 rotated from previous position = 70.6 degrees atoms outside contour = 40529, contour level = 0.15615 Position of 6h03.cif A (#2.1) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Position of 6h03.cif B (#2.2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Position of 6h03.cif C (#2.3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Position of 6h03.cif D (#2.4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Position of 6h03.cif E (#2.5) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Position of 6h03.cif F (#2.6) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Position of 6h03.cif G (#2.7) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Position of 6h03.cif H (#2.8) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Position of 6h03.cif I (#2.9) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Position of 6h03.cif P (#2.16) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Position of 6h03.cif Y (#2.25) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Position of 6h03.cif Z (#2.26) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Position of 6h03.cif a (#2.27) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Position of 6h03.cif b (#2.28) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Position of 6h03.cif c (#2.29) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Position of 6h03.cif d (#2.30) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Position of 6h03.cif e (#2.31) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.58911115 0.80728844 -0.03512024 223.28282620 -0.37052397 -0.30849991 -0.87609349 321.39813725 -0.71809473 -0.50310355 0.48086045 514.61014241 Axis 0.26421856 0.48380539 -0.83433860 Axis point 298.44169169 240.56047055 0.00000000 Rotation angle (degrees) 135.10287900 Shift along axis -214.86948900 Fit molecules 6h03.cif A (#2.1), 6h03.cif B (#2.2), 6h03.cif C (#2.3), 6h03.cif D (#2.4), 6h03.cif E (#2.5), 6h03.cif F (#2.6), 6h03.cif G (#2.7), 6h03.cif H (#2.8), 6h03.cif I (#2.9), 6h03.cif P (#2.16), 6h03.cif Y (#2.25), 6h03.cif Z (#2.26), 6h03.cif a (#2.27), 6h03.cif b (#2.28), 6h03.cif c (#2.29), 6h03.cif d (#2.30), 6h03.cif e (#2.31) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 45914 atoms average map value = 0.1079, steps = 288 shifted from previous position = 77.6 rotated from previous position = 0 degrees atoms outside contour = 34405, contour level = 0.15615 Position of 6h03.cif A (#2.1) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Position of 6h03.cif B (#2.2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Position of 6h03.cif C (#2.3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Position of 6h03.cif D (#2.4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Position of 6h03.cif E (#2.5) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Position of 6h03.cif F (#2.6) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Position of 6h03.cif G (#2.7) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Position of 6h03.cif H (#2.8) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Position of 6h03.cif I (#2.9) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Position of 6h03.cif P (#2.16) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Position of 6h03.cif Y (#2.25) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Position of 6h03.cif Z (#2.26) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Position of 6h03.cif a (#2.27) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Position of 6h03.cif b (#2.28) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Position of 6h03.cif c (#2.29) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Position of 6h03.cif d (#2.30) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Position of 6h03.cif e (#2.31) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 297.06932654 0.35227640 0.57786714 -0.73618674 -87.58573929 -0.65843369 -0.40598841 -0.63374954 480.56551522 Axis 0.32406701 0.87926512 -0.34910374 Axis point 231.43369703 0.00000000 169.14287453 Rotation angle (degrees) 149.37213517 Shift along axis -148.50793838 Fit molecules 6h03.cif A (#2.1), 6h03.cif B (#2.2), 6h03.cif C (#2.3), 6h03.cif D (#2.4), 6h03.cif E (#2.5), 6h03.cif F (#2.6), 6h03.cif G (#2.7), 6h03.cif H (#2.8), 6h03.cif I (#2.9), 6h03.cif P (#2.16), 6h03.cif Y (#2.25), 6h03.cif Z (#2.26), 6h03.cif a (#2.27), 6h03.cif b (#2.28), 6h03.cif c (#2.29), 6h03.cif d (#2.30), 6h03.cif e (#2.31) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 45914 atoms average map value = 0.1067, steps = 304 shifted from previous position = 94.1 rotated from previous position = 0 degrees atoms outside contour = 33958, contour level = 0.15615 Position of 6h03.cif A (#2.1) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Position of 6h03.cif B (#2.2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Position of 6h03.cif C (#2.3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Position of 6h03.cif D (#2.4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Position of 6h03.cif E (#2.5) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Position of 6h03.cif F (#2.6) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Position of 6h03.cif G (#2.7) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Position of 6h03.cif H (#2.8) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Position of 6h03.cif I (#2.9) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Position of 6h03.cif P (#2.16) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Position of 6h03.cif Y (#2.25) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Position of 6h03.cif Z (#2.26) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Position of 6h03.cif a (#2.27) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Position of 6h03.cif b (#2.28) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Position of 6h03.cif c (#2.29) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Position of 6h03.cif d (#2.30) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Position of 6h03.cif e (#2.31) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.66510631 0.70798516 0.23746706 247.65924340 0.35227640 0.57786714 -0.73618674 -7.55488147 -0.65843369 -0.40598841 -0.63374954 478.45407309 Axis 0.32406701 0.87926512 -0.34910374 Axis point 194.64647294 0.00000000 194.44894107 Rotation angle (degrees) 149.37213517 Shift along axis -93.41466188 Fit molecules 6h03.cif A (#2.1), 6h03.cif B (#2.2), 6h03.cif C (#2.3), 6h03.cif D (#2.4), 6h03.cif E (#2.5), 6h03.cif F (#2.6), 6h03.cif G (#2.7), 6h03.cif H (#2.8), 6h03.cif I (#2.9), 6h03.cif P (#2.16), 6h03.cif Y (#2.25), 6h03.cif Z (#2.26), 6h03.cif a (#2.27), 6h03.cif b (#2.28), 6h03.cif c (#2.29), 6h03.cif d (#2.30), 6h03.cif e (#2.31) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 45914 atoms average map value = 0.3016, steps = 1020 shifted from previous position = 93.8 rotated from previous position = 41.2 degrees atoms outside contour = 11533, contour level = 0.15615 Position of 6h03.cif A (#2.1) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 Position of 6h03.cif B (#2.2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 Position of 6h03.cif C (#2.3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 Position of 6h03.cif D (#2.4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 Position of 6h03.cif E (#2.5) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 Position of 6h03.cif F (#2.6) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 Position of 6h03.cif G (#2.7) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 Position of 6h03.cif H (#2.8) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 Position of 6h03.cif I (#2.9) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 Position of 6h03.cif P (#2.16) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 Position of 6h03.cif Y (#2.25) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 Position of 6h03.cif Z (#2.26) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 Position of 6h03.cif a (#2.27) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 Position of 6h03.cif b (#2.28) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 Position of 6h03.cif c (#2.29) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 Position of 6h03.cif d (#2.30) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 Position of 6h03.cif e (#2.31) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.85812310 0.46349559 -0.22089947 355.53264815 0.30975898 0.12422355 -0.94266531 96.53993354 -0.40948030 -0.87734848 -0.25017102 505.93065324 Axis 0.25927553 0.74857262 -0.61025833 Axis point 178.69629595 0.00000000 275.72032981 Rotation angle (degrees) 172.76378633 Shift along axis -144.30032596 > cofr showPivot true Fit molecules 6h03.cif A (#2.1), 6h03.cif B (#2.2), 6h03.cif C (#2.3), 6h03.cif D (#2.4), 6h03.cif E (#2.5), 6h03.cif F (#2.6), 6h03.cif G (#2.7), 6h03.cif H (#2.8), 6h03.cif I (#2.9), 6h03.cif P (#2.16), 6h03.cif Y (#2.25), 6h03.cif Z (#2.26), 6h03.cif a (#2.27), 6h03.cif b (#2.28), 6h03.cif c (#2.29), 6h03.cif d (#2.30), 6h03.cif e (#2.31) to map cryosparc_P1_J175_005_volume_map.mrc (#1) using 45914 atoms average map value = 0.3016, steps = 1208 shifted from previous position = 83.9 rotated from previous position = 64.5 degrees atoms outside contour = 11526, contour level = 0.15615 Position of 6h03.cif A (#2.1) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Position of 6h03.cif B (#2.2) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Position of 6h03.cif C (#2.3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Position of 6h03.cif D (#2.4) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Position of 6h03.cif E (#2.5) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Position of 6h03.cif F (#2.6) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Position of 6h03.cif G (#2.7) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Position of 6h03.cif H (#2.8) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Position of 6h03.cif I (#2.9) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Position of 6h03.cif P (#2.16) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Position of 6h03.cif Y (#2.25) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Position of 6h03.cif Z (#2.26) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Position of 6h03.cif a (#2.27) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Position of 6h03.cif b (#2.28) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Position of 6h03.cif c (#2.29) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Position of 6h03.cif d (#2.30) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Position of 6h03.cif e (#2.31) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.98068513 -0.00179130 0.19558492 410.90562194 -0.15044123 -0.63212862 -0.76011897 364.30311053 0.12499643 -0.77486141 0.61964965 381.79313994 Axis -0.08923041 0.42724544 -0.89972177 Axis point 197.10275763 263.81404578 0.00000000 Rotation angle (degrees) 175.26146287 Shift along axis -224.52603098 Fit map map 4 in map cryosparc_P1_J175_005_volume_map.mrc using 294474 points correlation = 0.003691, correlation about mean = 0.007943, overlap = 0.09951 steps = 2000, shift = 26.9, angle = 19.3 degrees Position of map 4 (#3) relative to cryosparc_P1_J175_005_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.87461839 -0.18286157 0.44900370 399.56424633 -0.21218085 -0.68835387 -0.69364850 383.40783049 0.43591509 -0.70194772 0.56324723 369.11367936 Axis -0.25025261 0.39467079 -0.88408631 Axis point 149.84765320 272.54220217 0.00000000 Rotation angle (degrees) 179.04989562 Shift along axis -275.00047529 Average map value = -0.0001 for 1636 atoms, 45914 outside contour > show #!3 models > hide #!3 models > select #3 2 models selected > close > open ""/Users/james/Desktop/Project 1/Coot/CD59/6h03.cif"" format mmcif 6h03.cif title: Open conformation of the membrane attack complex [more info...] Chain information for 6h03.cif #1 --- Chain | Description A | Complement C5,Complement C5 B | Complement component C6 C | Complement component C8 β chain D | Complement component C7 E | Complement component C8 γ chain F | Complement component C8 α chain G H I J K L M N O P Q R S T U V W X | Complement component C9 Non-standard residues in 6h03.cif #1 --- BMA — beta-D-mannopyranose (beta-D-mannose; D-mannose; mannose) NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE) > open ""/Users/james/Desktop/Project > 1/J175/cryosparc_P1_J175_005_volume_map.mrc"" Opened cryosparc_P1_J175_005_volume_map.mrc, grid size 512,512,512, pixel 0.829, shown at level 0.156, step 2, values float32 > select /X 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /W 3969 atoms, 4058 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /V 3979 atoms, 4069 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /U 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /T 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /S 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /R 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /Q 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) Fit molecule 6h03.cif (#1) to map cryosparc_P1_J175_005_volume_map.mrc (#2) using 70332 atoms average map value = 0.04771, steps = 464 shifted from previous position = 59.6 rotated from previous position = 15.8 degrees atoms outside contour = 62516, contour level = 0.15615 Position of 6h03.cif (#1) relative to cryosparc_P1_J175_005_volume_map.mrc (#2) coordinates: Matrix rotation and translation 0.96216823 0.27093759 -0.02872491 -96.00527430 -0.27093498 0.96258910 0.00405705 42.10580327 0.02874949 0.00387902 0.99957912 -26.81630960 Axis -0.00032672 -0.10547461 -0.99442194 Axis point 112.97126508 370.09226609 0.00000000 Rotation angle (degrees) 15.81046905 Shift along axis 22.25700022 > ui mousemode right ""rotate selected models"" > select #1 70332 atoms, 71985 bonds, 33 pseudobonds, 8833 residues, 2 models selected > ~select #1 Nothing selected > select /P 4005 atoms, 4094 bonds, 1 pseudobond, 503 residues, 2 models selected > select /O 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /N 4001 atoms, 4091 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /M 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /L 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /K 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /J 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > ui mousemode right select > select clear > select clear > select clear Drag select of 81 atoms, 86 bonds > select clear Drag select of 196 atoms, 203 bonds > delete atoms sel > delete bonds sel Drag select of 84 atoms, 87 bonds > delete atoms sel > delete bonds sel > hide #!2 models Drag select of 108 atoms, 113 bonds > select clear Drag select of 84 atoms, 87 bonds > delete atoms sel > delete bonds sel > select clear Drag select of 28 atoms, 29 bonds > delete atoms sel > delete bonds sel > show #!2 models Fit molecule 6h03.cif (#1) to map cryosparc_P1_J175_005_volume_map.mrc (#2) using 45914 atoms average map value = 0.09169, steps = 524 shifted from previous position = 40.4 rotated from previous position = 17.7 degrees atoms outside contour = 36485, contour level = 0.15615 Position of 6h03.cif (#1) relative to cryosparc_P1_J175_005_volume_map.mrc (#2) coordinates: Matrix rotation and translation 0.44804128 0.89287963 0.04499970 -186.96676998 -0.75333298 0.40416376 -0.51878808 431.36235625 -0.48140256 0.19853872 0.85371773 95.60566610 Axis 0.38333570 0.28130662 -0.87972742 Axis point 289.82792468 373.77990992 0.00000000 Rotation angle (degrees) 69.33144614 Shift along axis -34.43287781 Fit molecule 6h03.cif (#1) to map cryosparc_P1_J175_005_volume_map.mrc (#2) using 45914 atoms average map value = 0.09169, steps = 80 shifted from previous position = 0.0155 rotated from previous position = 0.00661 degrees atoms outside contour = 36485, contour level = 0.15615 Position of 6h03.cif (#1) relative to cryosparc_P1_J175_005_volume_map.mrc (#2) coordinates: Matrix rotation and translation 0.44796160 0.89291629 0.04506565 -186.96174209 -0.75333414 0.40412045 -0.51882015 431.38432006 -0.48147491 0.19846200 0.85369476 95.66360042 Axis 0.38330056 0.28137225 -0.87972174 Axis point 289.83503469 373.78735929 0.00000000 Rotation angle (degrees) 69.33591507 Shift along axis -34.44031273 > select #2 2 models selected > ~select #2 Nothing selected > select #1 45914 atoms, 47007 bonds, 27 pseudobonds, 5787 residues, 2 models selected > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" Fit molecule 6h03.cif (#1) to map cryosparc_P1_J175_005_volume_map.mrc (#2) using 45914 atoms average map value = 0.06729, steps = 372 shifted from previous position = 26 rotated from previous position = 14.6 degrees atoms outside contour = 38448, contour level = 0.15615 Position of 6h03.cif (#1) relative to cryosparc_P1_J175_005_volume_map.mrc (#2) coordinates: Matrix rotation and translation -0.96562010 0.17677571 0.19059951 355.81262316 0.22240277 0.94138565 0.25363376 -191.72756605 -0.13459136 0.28730371 -0.94833631 366.75697609 Axis 0.10199992 0.98513474 0.13822284 Axis point 203.89355087 0.00000000 181.38462660 Rotation angle (degrees) 170.49992321 Shift along axis -101.89043576 Fit molecule 6h03.cif (#1) to map cryosparc_P1_J175_005_volume_map.mrc (#2) using 45914 atoms average map value = 0.06729, steps = 48 shifted from previous position = 3.15e-13 rotated from previous position = 0.00709 degrees atoms outside contour = 38448, contour level = 0.15615 Position of 6h03.cif (#1) relative to cryosparc_P1_J175_005_volume_map.mrc (#2) coordinates: Matrix rotation and translation -0.96563487 0.17672198 0.19057452 355.83746123 0.22235913 0.94136534 0.25374737 -191.73413575 -0.13455750 0.28740329 -0.94831094 366.71365748 Axis 0.10197533 0.98512959 0.13827770 Axis point 203.89958569 0.00000000 181.37057712 Rotation angle (degrees) 170.50160815 Shift along axis -101.88800729 Fit molecule 6h03.cif (#1) to map cryosparc_P1_J175_005_volume_map.mrc (#2) using 45914 atoms average map value = 0.06729, steps = 36 shifted from previous position = 0.0154 rotated from previous position = 0.00882 degrees atoms outside contour = 38458, contour level = 0.15615 Position of 6h03.cif (#1) relative to cryosparc_P1_J175_005_volume_map.mrc (#2) coordinates: Matrix rotation and translation -0.96562201 0.17679955 0.19056776 355.80640498 0.22241297 0.94139020 0.25360789 -191.72525717 -0.13456086 0.28727410 -0.94834961 366.77477452 Axis 0.10200823 0.98513595 0.13820812 Axis point 203.88864021 0.00000000 181.39518375 Rotation angle (degrees) 170.50177030 Shift along axis -101.88900873 Fit molecule 6h03.cif (#1) to map cryosparc_P1_J175_005_volume_map.mrc (#2) using 45914 atoms average map value = 0.1809, steps = 532 shifted from previous position = 40 rotated from previous position = 31.8 degrees atoms outside contour = 24740, contour level = 0.15615 Position of 6h03.cif (#1) relative to cryosparc_P1_J175_005_volume_map.mrc (#2) coordinates: Matrix rotation and translation 0.33318651 0.26398179 -0.90515213 231.04774413 -0.37185116 -0.84540211 -0.38343448 628.95367901 -0.86643723 0.46433707 -0.18351464 350.09240969 Axis 0.79946472 -0.03650889 -0.59960258 Axis point 0.00000000 262.10988645 374.24156765 Rotation angle (degrees) 147.98022142 Shift along axis -48.16419062 Fit map 6h03.cif map 4 in map cryosparc_P1_J175_005_volume_map.mrc using 294280 points correlation = 0.6218, correlation about mean = 0.04712, overlap = 2.179e+04 steps = 64, shift = 0.426, angle = 1 degrees Position of 6h03.cif map 4 (#3) relative to cryosparc_P1_J175_005_volume_map.mrc (#2) coordinates: Matrix rotation and translation 0.31763249 0.26058356 -0.91170490 237.51451349 -0.37303118 -0.84962710 -0.37280229 628.23402004 -0.87175533 0.45850847 -0.17266338 351.29999116 Axis 0.79474301 -0.03819227 -0.60574326 Axis point 0.00000000 262.58831352 377.43666426 Rotation angle (degrees) 148.46589366 Shift along axis -48.02828265 Average map value = 0.1805 for 45914 atoms, 24538 outside contour > show #!3 models > hide #!2 models > ~select #1 Nothing selected > show #!2 models > hide #!1 models > ui mousemode right ""translate selected models"" > hide #!3 models > select #1 45914 atoms, 47007 bonds, 27 pseudobonds, 5787 residues, 2 models selected > ~select #1 Nothing selected > show #!1 models > select #1 45914 atoms, 47007 bonds, 27 pseudobonds, 5787 residues, 2 models selected > undo Fit map 6h03.cif map 4 in map cryosparc_P1_J175_005_volume_map.mrc using 294280 points correlation = 0.6218, correlation about mean = 0.04708, overlap = 2.179e+04 steps = 28, shift = 0.00939, angle = 0.0109 degrees Position of 6h03.cif map 4 (#3) relative to cryosparc_P1_J175_005_volume_map.mrc (#2) coordinates: Matrix rotation and translation 0.31757301 0.26069935 -0.91169252 237.49765574 -0.37288520 -0.84966931 -0.37285213 628.21188177 -0.87183945 0.45836441 -0.17262111 351.35505022 Axis 0.79472653 -0.03810354 -0.60577048 Axis point 0.00000000 262.55957447 377.45073335 Rotation angle (degrees) 148.46914904 Shift along axis -48.03192261 Average map value = 0.1805 for 45914 atoms, 24544 outside contour Fit map 6h03.cif map 4 in map cryosparc_P1_J175_005_volume_map.mrc using 294280 points correlation = 0.6345, correlation about mean = 0.04018, overlap = 2.213e+04 steps = 168, shift = 6.23, angle = 6.95 degrees Position of 6h03.cif map 4 (#3) relative to cryosparc_P1_J175_005_volume_map.mrc (#2) coordinates: Matrix rotation and translation 0.20871713 0.22666813 -0.95134575 289.20278474 -0.38502045 -0.87516703 -0.29298794 621.87081854 -0.89899746 0.42743917 -0.09539048 353.59395682 Axis 0.76112467 -0.05530549 -0.64624341 Axis point 0.00000000 267.56661697 401.97108856 Rotation angle (degrees) 151.75356521 Shift along axis -42.78126099 Average map value = 0.1832 for 45914 atoms, 23477 outside contour Fit map 6h03.cif map 4 in map cryosparc_P1_J175_005_volume_map.mrc using 294280 points correlation = 0.7826, correlation about mean = 0.2817, overlap = 3.394e+04 steps = 272, shift = 5.08, angle = 16.6 degrees Position of 6h03.cif map 4 (#3) relative to cryosparc_P1_J175_005_volume_map.mrc (#2) coordinates: Matrix rotation and translation -0.03256380 0.08163171 -0.99613045 400.67771096 -0.36158074 -0.93011388 -0.06440154 576.97805982 -0.93177196 0.35808442 0.05980450 335.69761045 Axis 0.68619961 -0.10453074 -0.71986347 Axis point 423.24912310 218.18119241 -0.00000000 Rotation angle (degrees) 162.07060411 Shift along axis -27.02350235 Average map value = 0.3016 for 45914 atoms, 11522 outside contour > ui mousemode right ""translate selected models"" > ui mousemode right translate > ~select #1 Nothing selected > save ""/Users/james/Desktop/Project 1/J175/partial-model-in-map.cxs"" > lighting soft > show #!3 models > hide #!1 models > volume #2 level 0.1646 > show #!1 models > hide #!3 models Fit map 6h03.cif map 4 in map cryosparc_P1_J175_005_volume_map.mrc using 294280 points correlation = 0.7826, correlation about mean = 0.2817, overlap = 3.394e+04 steps = 40, shift = 0.00518, angle = 0.0025 degrees Position of 6h03.cif map 4 (#3) relative to cryosparc_P1_J175_005_volume_map.mrc (#2) coordinates: Matrix rotation and translation -0.03257992 0.08160181 -0.99613237 400.68947876 -0.36155418 -0.93012642 -0.06436954 576.97330647 -0.93178170 0.35805867 0.05980692 335.70690677 Axis 0.68619618 -0.10453181 -0.71986658 Axis point 423.24842966 218.18318788 0.00000000 Rotation angle (degrees) 162.07304572 Shift along axis -27.02465723 Average map value = 0.3016 for 45914 atoms, 12458 outside contour > hide #!1 models > show #!3 models > volume #3 level 0.1073 > volume #2 level 0.1667 > select /P 4005 atoms, 4094 bonds, 1 pseudobond, 503 residues, 2 models selected > hide #!2 models > hide #!3 models > show #!2 models > show #!1 models > select /I 4005 atoms, 4095 bonds, 1 pseudobond, 503 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > ui mousemode right select > select clear Drag select of 25 atoms, 26 bonds Drag select of 28 atoms, 29 bonds > select clear Drag select of 28 atoms, 29 bonds > delete atoms sel > delete bonds sel Fit map 6h03.cif map 4 in map cryosparc_P1_J175_005_volume_map.mrc using 268502 points correlation = 0.8003, correlation about mean = 0.3097, overlap = 3.294e+04 steps = 40, shift = 0.0222, angle = 0.0296 degrees Position of 6h03.cif map 4 (#3) relative to cryosparc_P1_J175_005_volume_map.mrc (#2) coordinates: Matrix rotation and translation -0.03298549 0.08190388 -0.99609423 400.67162530 -0.36165280 -0.93007906 -0.06449970 577.00065964 -0.93172916 0.35811271 0.06029988 335.57200552 Axis 0.68603141 -0.10448454 -0.72003047 Axis point 423.13379857 218.20259386 0.00000000 Rotation angle (degrees) 162.06050870 Shift along axis -27.03639618 Average map value = 0.3217 for 41881 atoms, 9128 outside contour > ui mousemode right translate > save ""/Users/james/Desktop/Project 1/J175/partial-model-in-map.cxs"" > includeMaps true opened ChimeraX session > hide #!2 models > lighting simple > select #1 41881 atoms, 42882 bonds, 26 pseudobonds, 5282 residues, 2 models selected > mlp sel Map values for surface ""6h03.cif_A SES surface"": minimum -28.11, mean -3.747, maximum 24.67 Map values for surface ""6h03.cif_C SES surface"": minimum -28.74, mean -4.326, maximum 24.61 Map values for surface ""6h03.cif_D SES surface"": minimum -27.43, mean -4.791, maximum 22.6 Map values for surface ""6h03.cif_E SES surface"": minimum -27.62, mean -3.69, maximum 22.4 Map values for surface ""6h03.cif_F SES surface"": minimum -28.89, mean -5.11, maximum 24.13 Map values for surface ""6h03.cif_B SES surface"": minimum -27.91, mean -4.931, maximum 23.95 Map values for surface ""6h03.cif_G SES surface"": minimum -27.86, mean -4.393, maximum 24.07 Map values for surface ""6h03.cif_P SES surface"": minimum -28.65, mean -4.492, maximum 25.29 Map values for surface ""6h03.cif_H SES surface"": minimum -28.11, mean -4.503, maximum 28.12 > show #!2 models > ~select #1 9 models selected > hide #!2 models > show #!2 models > lighting soft > hide #!2 models > hide #1.10 models > show #1.10 models > hide #1.9 models > show #1.9 models > hide #!1 models > show #!1 models > hide #1.2 models > show #1.2 models > hide #1 target a > hide #1.10 models > show #1.10 models > hide #1.10 models > hide #1.9 models > hide #1.8 models > show #1.9 models > hide #1.9 models > show #1.8 models > hide #1.8 models > hide #1.7 models > show #1.7 models > hide #1.6 models > show #1.6 models > hide #1.6 models > show #1.6 models > hide #1.5 models > show #1.5 models > hide #1.5 models > show #1.5 models > show #1.8 models > hide #1.8 models > show #1.8 models > show #1.9 models > show #1.10 models > hide #1.10 models > hide #1.9 models > hide #1.8 models > show #1.8 models > show #1.9 models > show #1.10 models > set bgColor white > save /Users/james/Desktop/image16.png supersample 3 > save /Users/james/Desktop/image17.png supersample 3 > hide #1.10 models > hide #1.9 models > hide #1.8 models > show #1.8 models > hide #1.2 models > hide #1.3 models > hide #1.4 models > hide #1.5 models > hide #1.6 models > hide #1.1 models > show #1.1 models > hide #1.7 models > show #1.7 models > hide #1.7 models > show #1.6 models > graphics silhouettes true > graphics silhouettes false > lighting shadows true intensity 0.5 > lighting shadows false > lighting soft > lighting flat > graphics silhouettes false > lighting flat > lighting flat > lighting flat > lighting shadows true intensity 0.5 > lighting flat > lighting shadows true intensity 0.5 > graphics silhouettes false > lighting full > lighting simple > lighting soft > hide #1.6 models > show #1.7 models > hide #1.7 models > show #1.6 models > color bfactor 41881 atoms, 5282 residues, 9 surfaces, atom bfactor range 0 to 366 > rainbow > coulombic The following heavy (non-hydrogen) atoms are missing, which may result in inaccurate electrostatics: /D VAL 346 CG2, /D VAL 346 CG1, /B GLU 629 OE2, /B GLU 629 CG, /B GLU 629 OE1, and 68 other atoms /C GLY 208 HN Traceback (most recent call last): File ""/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 202, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File ""/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 363, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) File ""/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1273, in run_provider return cls._get_func(api, ""run_provider"")(session, name, mgr, **kw) File ""/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/__init__.py"", line 52, in run_provider shortcuts.run_provider(session, name) File ""/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 1221, in run_provider keyboard_shortcuts(session).try_shortcut(name) File ""/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 376, in try_shortcut self.run_shortcut(keys) File ""/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 394, in run_shortcut sc.run(self.session, status = self._enabled) File ""/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 313, in run f(s) File ""/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 537, in run_expanded_command run(session, cmd) File ""/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/shortcuts/shortcuts.py"", line 480, in run run_command(session, command, **kw) File ""/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/coulombic/cmd.py"", line 97, in cmd_coulombic assign_charges(session, needs_assignment, his_scheme) File ""/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/coulombic/coulombic.py"", line 96, in assign_charges assign_residue_charges(charged_residues, his_scheme) File ""/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/coulombic/coulombic.py"", line 161, in assign_residue_charges a.charge = res_data[aname] KeyError: 'HN' KeyError: 'HN' File ""/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/coulombic/coulombic.py"", line 161, in assign_residue_charges a.charge = res_data[aname] See log for complete Python traceback. OpenGL version: 4.1 INTEL-16.1.7 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655 OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,2 Processor Name: Quad-Core Intel Core i7 Processor Speed: 2.7 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 8 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 1554.60.15.0.0 (iBridge: 18.16.13030.0.0,0) Software: System Software Overview: System Version: macOS 11.1 (20C69) Kernel Version: Darwin 20.2.0 Time since boot: 10 days 22:00 Graphics/Displays: Intel Iris Plus Graphics 655: Chipset Model: Intel Iris Plus Graphics 655 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3ea5 Revision ID: 0x0001 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: LG HDR QHD: Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 @ 59.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: 008NTMXNH891 Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: Yes Connection Type: Thunderbolt/DisplayPort PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.9 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.0 Babel: 2.8.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.6.20 chardet: 3.0.4 ChimeraX-AddH: 2.1.3 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.6.1 ChimeraX-AtomSearch: 2.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.0.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.0 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.0 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.0 ChimeraX-Clipper: 0.15.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.1.1 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.0.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-DataFormats: 1.0 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.0 ChimeraX-Help: 1.0 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.0 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0 ChimeraX-ISOLDE: 1.1.0 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.0 ChimeraX-Log: 1.1.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Map: 1.0.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.1 ChimeraX-MDcrds: 2.0 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.0 ChimeraX-mmCIF: 2.2 ChimeraX-MMTF: 2.0 ChimeraX-Modeller: 1.0 ChimeraX-ModelPanel: 1.0 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.0 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0 ChimeraX-OpenCommand: 1.2.1 ChimeraX-PDB: 2.1 ChimeraX-PDBBio: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0 ChimeraX-PubChem: 2.0 ChimeraX-Read-Pbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.0 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.0.4 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.0 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0 ChimeraX-ToolshedUtils: 1.0 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.2.3 ChimeraX-uniprot: 2.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.20 decorator: 4.4.2 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.16 imagecodecs: 2020.5.30 imagecodecs-lite: 2020.1.31 imagesize: 1.2.0 ipykernel: 5.3.0 ipython: 7.15.0 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.3 jupyter-core: 4.6.3 kiwisolver: 1.2.0 line-profiler: 2.1.2 lxml: 4.5.1 MarkupSafe: 1.1.1 matplotlib: 3.2.1 msgpack: 1.0.0 netifaces: 0.10.9 networkx: 2.4 numexpr: 2.7.1 numpy: 1.18.5 numpydoc: 1.0.0 openvr: 1.12.501 packaging: 20.4 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.1.2 pip: 20.2.2 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.7 psutil: 5.7.0 ptyprocess: 0.6.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.6.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.12.3 PyQt5-sip: 4.19.19 PyQtWebEngine-commercial: 5.12.1 python-dateutil: 2.8.1 pytz: 2020.1 pyzmq: 19.0.2 qtconsole: 4.7.4 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.4.1 setuptools: 49.4.0 sfftk-rw: 0.6.6.dev0 six: 1.15.0 snowballstemmer: 2.0.0 sortedcontainers: 2.2.2 Sphinx: 3.1.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.6.3 tinyarray: 1.2.2 tornado: 6.0.4 traitlets: 5.0.4 urllib3: 1.25.10 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.34.2 }}} " defect closed normal Surface/Binding Analysis duplicate all ChimeraX