id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3932 Permission denied saving image 352884536@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.18362 ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description PermissionError: [Errno 13] Permission denied: 'li2e+w.tif' Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""E:\\\GHSR data collection\\\123.pdb"" Summary of feedback from opening E:\\\GHSR data collection\\\123.pdb --- warnings | Ignored bad PDB record found on line 2040 TER Ignored bad PDB record found on line 4641 TER Ignored bad PDB record found on line 6419 TER Ignored bad PDB record found on line 6856 TER Ignored bad PDB record found on line 7830 TER 2 messages similar to the above omitted Chain information for 123.pdb #1 --- Chain | Description A | No description available B | No description available E | No description available G | No description available N | No description available R | No description available > set bgColor white > save li2e.tif width 1000 height 1000 supersample 4 transparentBackground > true Traceback (most recent call last): File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 258, in execute cmd.run(cmd_text) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 79, in provider_save mgr).save(session, path, **provider_kw) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\\__init__.py"", line 24, in save save_image(session, path, format_name, **kw) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\save.py"", line 115, in save_image i.save(path, format_name, **metadata) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py"", line 2131, in save fp = builtins.open(filename, ""w+b"") PermissionError: [Errno 13] Permission denied: 'li2e.tif' PermissionError: [Errno 13] Permission denied: 'li2e.tif' File ""D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py"", line 2131, in save fp = builtins.open(filename, ""w+b"") See log for complete Python traceback. > save li2e.tif width 1000 height 1000 supersample 4 transparentBackground > true Traceback (most recent call last): File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 258, in execute cmd.run(cmd_text) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 79, in provider_save mgr).save(session, path, **provider_kw) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\\__init__.py"", line 24, in save save_image(session, path, format_name, **kw) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\save.py"", line 115, in save_image i.save(path, format_name, **metadata) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py"", line 2131, in save fp = builtins.open(filename, ""w+b"") PermissionError: [Errno 13] Permission denied: 'li2e.tif' PermissionError: [Errno 13] Permission denied: 'li2e.tif' File ""D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py"", line 2131, in save fp = builtins.open(filename, ""w+b"") See log for complete Python traceback. > save li2e.tif width 1000 height 1000 supersample 4 transparentBackground > true Traceback (most recent call last): File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 258, in execute cmd.run(cmd_text) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 79, in provider_save mgr).save(session, path, **provider_kw) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\\__init__.py"", line 24, in save save_image(session, path, format_name, **kw) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\save.py"", line 115, in save_image i.save(path, format_name, **metadata) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py"", line 2131, in save fp = builtins.open(filename, ""w+b"") PermissionError: [Errno 13] Permission denied: 'li2e.tif' PermissionError: [Errno 13] Permission denied: 'li2e.tif' File ""D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py"", line 2131, in save fp = builtins.open(filename, ""w+b"") See log for complete Python traceback. No known data format for file suffix '.' > save li2e.tif E:/ width 1000 height 1000 supersample 4 transparentBackground > true Expected a keyword Cannot determine format for 'E:/' Cannot determine format for '(E:)' > help help:user/preferences.html#background > save li2e+w.tif width 1000 height 1000 supersample 4 transparentBackground > true Traceback (most recent call last): File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 258, in execute cmd.run(cmd_text) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 79, in provider_save mgr).save(session, path, **provider_kw) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\\__init__.py"", line 24, in save save_image(session, path, format_name, **kw) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\save.py"", line 115, in save_image i.save(path, format_name, **metadata) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py"", line 2131, in save fp = builtins.open(filename, ""w+b"") PermissionError: [Errno 13] Permission denied: 'li2e+w.tif' PermissionError: [Errno 13] Permission denied: 'li2e+w.tif' File ""D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py"", line 2131, in save fp = builtins.open(filename, ""w+b"") See log for complete Python traceback. > save li2e+w.tif width 1000 height 1000 supersample 4 transparentBackground > true Traceback (most recent call last): File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 258, in execute cmd.run(cmd_text) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 79, in provider_save mgr).save(session, path, **provider_kw) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\\__init__.py"", line 24, in save save_image(session, path, format_name, **kw) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\save.py"", line 115, in save_image i.save(path, format_name, **metadata) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py"", line 2131, in save fp = builtins.open(filename, ""w+b"") PermissionError: [Errno 13] Permission denied: 'li2e+w.tif' PermissionError: [Errno 13] Permission denied: 'li2e+w.tif' File ""D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py"", line 2131, in save fp = builtins.open(filename, ""w+b"") See log for complete Python traceback. > save li2e+w.tif width 1000 height 1000 supersample 4 transparentBackground > true Traceback (most recent call last): File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 258, in execute cmd.run(cmd_text) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 79, in provider_save mgr).save(session, path, **provider_kw) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\\__init__.py"", line 24, in save save_image(session, path, format_name, **kw) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\save.py"", line 115, in save_image i.save(path, format_name, **metadata) File ""D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py"", line 2131, in save fp = builtins.open(filename, ""w+b"") PermissionError: [Errno 13] Permission denied: 'li2e+w.tif' PermissionError: [Errno 13] Permission denied: 'li2e+w.tif' File ""D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py"", line 2131, in save fp = builtins.open(filename, ""w+b"") See log for complete Python traceback. > save File ""D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\ li2e.tif width > 1000 height 1000 supersample 4 transparentBackground true Missing or invalid ""restOfLine"" argument: incomplete quoted text Cannot determine format for 'File' 'D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\' has only compression suffix; cannot determine format from suffix Cannot determine format for 'E:\' > save li2e.tif E:\ width 1000 height 1000 supersample 4 transparentBackground > true Expected a keyword > save li2e.tif E:\ width 1000 height 1000 supersample 4 transparentBackground > true Expected a keyword > save li2e.tif E:/ width 1000 height 1000 supersample 4 transparentBackground > true Expected a keyword OpenGL version: 3.3.0 NVIDIA 442.74 OpenGL renderer: GeForce GTX 1650 SUPER/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: IPASON Model: OS: Microsoft Windows 10 家庭中文版 (Build 18363) Memory: 17,130,639,360 MaxProcessMemory: 137,438,953,344 CPU: 6 AMD Ryzen 5 3500X 6-Core Processor "" PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 }}} " defect closed normal Input/Output not a bug all ChimeraX