id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3768 OpenMM/OpenCL crash misupov@… Tristan Croll "{{{ The following bug report has been submitted: Platform: Darwin-17.7.0-x86_64-i386-64bit ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [85830] Path: /Applications/ChimeraX-1.0.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.0.0 (1.0.0.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [85830] User ID: 501 Date/Time: 2020-09-25 11:28:37.335 +0100 OS Version: Mac OS X 10.13.6 (17G14019) Report Version: 12 Anonymous UUID: B3AE2F25-6339-0527-9417-9B4CA56EE2FE Sleep/Wake UUID: 54F40691-178C-45F8-B0DE-48547CA3E3ED Time Awake Since Boot: 3100000 seconds Time Since Wake: 12000 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: opencl_runtime Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Application Specific Information: abort() called Application Specific Signatures: Graphics kernel error: 0xfffffffe Thread 0 Crashed:: CrBrowserMain Dispatch queue: opencl_runtime 0 libsystem_kernel.dylib 0x00007fff575c3b66 __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff5778e080 pthread_kill + 333 2 libsystem_c.dylib 0x00007fff574d16fe raise + 26 3 libsystem_platform.dylib 0x00007fff57781f5a _sigtramp + 26 4 ??? 000000000000000000 0 + 0 5 libsystem_c.dylib 0x00007fff5751f1ae abort + 127 6 libGPUSupportMercury.dylib 0x00007fff47ffc0f1 gpusGenerateCrashLog + 168 7 com.apple.driver.AppleIntelHD5000GraphicsGLDriver 0x000000011d15fc5d gpusKillClientExt + 9 8 libGPUSupportMercury.dylib 0x00007fff47ffcab0 gpusQueueSubmitDataBuffers + 171 9 com.apple.driver.AppleIntelHD5000GraphicsGLDriver 0x000000011cde9b4b IntelCLCommandBuffer::getNew(GLDQueueRec*) + 31 10 com.apple.driver.AppleIntelHD5000GraphicsGLDriver 0x000000011cde9a33 intelSubmitCLCommands(GLDQueueRec*, unsigned int) + 69 11 com.apple.driver.AppleIntelHD5000GraphicsGLDriver 0x000000011cde997e CHAL_INTEL::ChalContext::ChalFlush() + 82 12 com.apple.driver.AppleIntelHD5000GraphicsGLDriver 0x000000011cde98e9 gldFinishQueue + 43 13 com.apple.opencl 0x00007fff37cb70c1 0x7fff37ca9000 + 57537 14 com.apple.opencl 0x00007fff37cb7d8a 0x7fff37ca9000 + 60810 15 com.apple.opencl 0x00007fff37cd47bd 0x7fff37ca9000 + 178109 16 com.apple.opencl 0x00007fff37cd7a90 0x7fff37ca9000 + 191120 17 libdispatch.dylib 0x00007fff57439db8 _dispatch_client_callout + 8 18 libdispatch.dylib 0x00007fff5744d1e1 _dispatch_queue_barrier_sync_invoke_and_complete + 60 19 com.apple.opencl 0x00007fff37cd790a 0x7fff37ca9000 + 190730 20 com.apple.opencl 0x00007fff37cd3a49 0x7fff37ca9000 + 174665 21 com.apple.opencl 0x00007fff37cc9a97 clEnqueueWriteBuffer + 777 22 libOpenMMOpenCL.dylib 0x0000000141845d78 OpenMM::OpenCLArray::upload(void const*, bool) + 104 23 libOpenMMOpenCL.dylib 0x000000014191ef82 OpenMM::OpenCLCalcCustomCompoundBondForceKernel::initialize(OpenMM::System const&, OpenMM::CustomCompoundBondForce const&) + 2146 24 libOpenMM.dylib 0x00000001414eb089 OpenMM::CustomCompoundBondForceImpl::initialize(OpenMM::ContextImpl&) + 489 25 libOpenMM.dylib 0x00000001414d7228 OpenMM::ContextImpl::initialize() + 1160 26 libOpenMM.dylib 0x00000001414d35b3 OpenMM::Context::Context(OpenMM::System const&, OpenMM::Integrator&, OpenMM::Platform&, std::__1::map, std::__1::allocator >, std::__1::basic_string, std::__1::allocator >, std::__1::less, std::__1::allocator > >, std::__1::allocator, std::__1::allocator > const, std::__1::basic_string, std::__1::allocator > > > > const&) + 227 27 _openmm.cpython-37m-darwin.so 0x00000001411c171b _wrap_new_Context(_object*, _object*) + 1275 28 org.python.python 0x000000010342ac23 PyCFunction_Call + 387 29 org.python.python 0x00000001034fcaca _PyEval_EvalFrameDefault + 27370 30 org.python.python 0x00000001035009bc _PyEval_EvalCodeWithName + 3276 31 org.python.python 0x000000010342a377 _PyFunction_FastCallDict + 455 32 org.python.python 0x000000010342b883 _PyObject_Call_Prepend + 131 33 org.python.python 0x000000010347ee3f slot_tp_init + 175 34 org.python.python 0x000000010347a534 type_call + 292 35 org.python.python 0x000000010342a6df _PyObject_FastCallKeywords + 575 36 org.python.python 0x00000001034ffb5d call_function + 765 37 org.python.python 0x00000001034fc7a7 _PyEval_EvalFrameDefault + 26567 38 org.python.python 0x00000001035009bc _PyEval_EvalCodeWithName + 3276 39 org.python.python 0x000000010342a377 _PyFunction_FastCallDict + 455 40 org.python.python 0x000000010342b883 _PyObject_Call_Prepend + 131 41 org.python.python 0x000000010347ee3f slot_tp_init + 175 42 org.python.python 0x000000010347a534 type_call + 292 43 org.python.python 0x000000010342a6df _PyObject_FastCallKeywords + 575 44 org.python.python 0x00000001034ffb5d call_function + 765 45 org.python.python 0x00000001034fc7a7 _PyEval_EvalFrameDefault + 26567 46 org.python.python 0x000000010342ad61 function_code_fastcall + 177 47 org.python.python 0x00000001034ffb64 call_function + 772 48 org.python.python 0x00000001034fc78a _PyEval_EvalFrameDefault + 26538 49 org.python.python 0x000000010342ad61 function_code_fastcall + 177 50 org.python.python 0x00000001034ffb64 call_function + 772 51 org.python.python 0x00000001034fc78a _PyEval_EvalFrameDefault + 26538 52 org.python.python 0x000000010342ad61 function_code_fastcall + 177 53 org.python.python 0x00000001034ffb64 call_function + 772 54 org.python.python 0x00000001034fc78a _PyEval_EvalFrameDefault + 26538 55 org.python.python 0x000000010342ad61 function_code_fastcall + 177 56 org.python.python 0x00000001034ffb64 call_function + 772 57 org.python.python 0x00000001034fc78a _PyEval_EvalFrameDefault + 26538 58 org.python.python 0x00000001035009bc _PyEval_EvalCodeWithName + 3276 59 org.python.python 0x000000010342a377 _PyFunction_FastCallDict + 455 60 org.python.python 0x00000001034fc9ca _PyEval_EvalFrameDefault + 27114 61 org.python.python 0x00000001035009bc _PyEval_EvalCodeWithName + 3276 62 org.python.python 0x000000010342a879 _PyFunction_FastCallKeywords + 217 63 org.python.python 0x00000001034ffb64 call_function + 772 64 org.python.python 0x00000001034fc78a _PyEval_EvalFrameDefault + 26538 65 org.python.python 0x00000001035009bc _PyEval_EvalCodeWithName + 3276 66 org.python.python 0x000000010342a377 _PyFunction_FastCallDict + 455 67 org.python.python 0x000000010342b883 _PyObject_Call_Prepend + 131 68 org.python.python 0x000000010342a9d8 PyObject_Call + 136 69 QtCore.so 0x000000011195ff17 PyQtSlot::call(_object*, _object*) const + 39 70 QtCore.so 0x000000011195fe26 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374 71 QtCore.so 0x0000000111960925 PyQtSlotProxy::unislot(void**) + 85 72 QtCore.so 0x000000011196089a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58 73 QtCore 0x00000001114322dd QMetaObject::activate(QObject*, int, int, void**) + 1773 74 QtCore 0x000000011143282c QMetaObject::activate(QObject*, int, int, void**) + 3132 75 QtWidgets 0x000000011085fa67 QWidgetLineControl::processKeyEvent(QKeyEvent*) + 551 76 QtWidgets 0x0000000110856722 QLineEdit::keyPressEvent(QKeyEvent*) + 34 77 QtWidgets 0x000000011075149f QWidget::event(QEvent*) + 527 78 QtWidgets 0x0000000110855a87 QLineEdit::event(QEvent*) + 727 79 QtWidgets 0x000000011081a540 QComboBox::keyPressEvent(QKeyEvent*) + 784 80 QtWidgets.so 0x00000001103b723b meth_QComboBox_keyPressEvent(_object*, _object*) + 139 81 org.python.python 0x000000010342b392 _PyMethodDef_RawFastCallKeywords + 226 82 org.python.python 0x000000010342a8b9 _PyCFunction_FastCallKeywords + 41 83 org.python.python 0x00000001034ffaf0 call_function + 656 84 org.python.python 0x00000001034fc7a7 _PyEval_EvalFrameDefault + 26567 85 org.python.python 0x00000001035009bc _PyEval_EvalCodeWithName + 3276 86 org.python.python 0x000000010342a377 _PyFunction_FastCallDict + 455 87 org.python.python 0x000000010342b883 _PyObject_Call_Prepend + 131 88 org.python.python 0x000000010342a9d8 PyObject_Call + 136 89 sip.so 0x0000000111820f7a call_method + 76 90 sip.so 0x000000011181cd07 sip_api_call_procedure_method + 152 91 QtWidgets.so 0x00000001102ba9a7 sipQComboBox::keyPressEvent(QKeyEvent*) + 103 92 QtWidgets 0x000000011075149f QWidget::event(QEvent*) + 527 93 QtWidgets 0x0000000110819ea4 QComboBox::event(QEvent*) + 372 94 QtWidgets.so 0x00000001102b9eb0 sipQComboBox::event(QEvent*) + 192 95 QtWidgets 0x000000011071570d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269 96 QtWidgets 0x0000000110716c5c QApplication::notify(QObject*, QEvent*) + 924 97 QtWidgets.so 0x00000001102d53ca sipQApplication::notify(QObject*, QEvent*) + 234 98 QtCore 0x00000001114014c4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212 99 QtWidgets 0x00000001107702a1 0x110705000 + 438945 100 QtWidgets 0x000000011076f691 0x110705000 + 435857 101 QtWidgets 0x000000011071570d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269 102 QtWidgets 0x0000000110716b12 QApplication::notify(QObject*, QEvent*) + 594 103 QtWidgets.so 0x00000001102d53ca sipQApplication::notify(QObject*, QEvent*) + 234 104 QtCore 0x00000001114014c4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212 105 QtGui 0x0000000110ceb41f QGuiApplicationPrivate::processKeyEvent(QWindowSystemInterfacePrivate::KeyEvent*) + 191 106 QtGui 0x0000000110cd16db QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219 107 QtGui 0x0000000110ccc615 QWindowSystemInterface::flushWindowSystemEvents(QFlags) + 581 108 libqcocoa.dylib 0x000000011b0910d8 0x11b062000 + 192728 109 libqcocoa.dylib 0x000000011b0912a8 0x11b062000 + 193192 110 com.apple.AppKit 0x00007fff2d3e143d -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 5040 111 com.apple.AppKit 0x00007fff2d3dfc70 -[NSWindow(NSEventRouting) sendEvent:] + 497 112 libqcocoa.dylib 0x000000011b0946b5 0x11b062000 + 206517 113 com.apple.AppKit 0x00007fff2d241236 -[NSApplication(NSEvent) sendEvent:] + 2462 114 libqcocoa.dylib 0x000000011b09b70a 0x11b062000 + 235274 115 com.apple.AppKit 0x00007fff2caa187d -[NSApplication run] + 812 116 libqcocoa.dylib 0x000000011b097de3 0x11b062000 + 220643 117 QtCore 0x00000001113fcadf QEventLoop::exec(QFlags) + 431 118 QtCore 0x0000000111401ad2 QCoreApplication::exec() + 130 119 QtWidgets.so 0x00000001103c47d2 meth_QApplication_exec_(_object*, _object*) + 82 120 org.python.python 0x000000010342b392 _PyMethodDef_RawFastCallKeywords + 226 121 org.python.python 0x000000010342a8b9 _PyCFunction_FastCallKeywords + 41 122 org.python.python 0x00000001034ffaf0 call_function + 656 123 org.python.python 0x00000001034fc7a7 _PyEval_EvalFrameDefault + 26567 124 org.python.python 0x000000010342ad61 function_code_fastcall + 177 125 org.python.python 0x00000001034ffb64 call_function + 772 126 org.python.python 0x00000001034fc7a7 _PyEval_EvalFrameDefault + 26567 127 org.python.python 0x00000001035009bc _PyEval_EvalCodeWithName + 3276 128 org.python.python 0x000000010342a879 _PyFunction_FastCallKeywords + 217 129 org.python.python 0x00000001034ffb64 call_function + 772 130 org.python.python 0x00000001034fc83e _PyEval_EvalFrameDefault + 26718 131 org.python.python 0x00000001035009bc _PyEval_EvalCodeWithName + 3276 132 org.python.python 0x00000001034f5f40 PyEval_EvalCode + 48 133 org.python.python 0x00000001034f34d7 builtin_exec + 583 134 org.python.python 0x000000010342b545 _PyMethodDef_RawFastCallKeywords + 661 135 org.python.python 0x000000010342a8b9 _PyCFunction_FastCallKeywords + 41 136 org.python.python 0x00000001034ffaf0 call_function + 656 137 org.python.python 0x00000001034fc83e _PyEval_EvalFrameDefault + 26718 138 org.python.python 0x00000001035009bc _PyEval_EvalCodeWithName + 3276 139 org.python.python 0x000000010342a879 _PyFunction_FastCallKeywords + 217 140 org.python.python 0x00000001034ffb64 call_function + 772 141 org.python.python 0x00000001034fc83e _PyEval_EvalFrameDefault + 26718 142 org.python.python 0x00000001035009bc _PyEval_EvalCodeWithName + 3276 143 org.python.python 0x000000010342a377 _PyFunction_FastCallDict + 455 144 org.python.python 0x000000010355aa83 pymain_run_module + 147 145 org.python.python 0x0000000103559b6c pymain_main + 5900 146 org.python.python 0x0000000103558453 Py_Main + 51 147 edu.ucsf.cgl.ChimeraX 0x00000001033f9dc8 main + 120 148 libdyld.dylib 0x00007fff57473015 start + 1 Thread 1: 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 libopenblasp-r0.3.7.dylib 0x0000000104f8ac3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 2: 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 libopenblasp-r0.3.7.dylib 0x0000000104f8ac3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 3: 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 libopenblasp-r0.3.7.dylib 0x0000000104f8ac3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 4:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff575ba1fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff575b9714 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff2f516405 __CFRunLoopServiceMachPort + 341 3 com.apple.CoreFoundation 0x00007fff2f515757 __CFRunLoopRun + 1783 4 com.apple.CoreFoundation 0x00007fff2f514dd3 CFRunLoopRunSpecific + 483 5 com.apple.AppKit 0x00007fff2cbe9fc4 _NSEventThread + 184 6 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 7 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 8 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 5:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff575ba1fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff575b9714 mach_msg + 60 2 QtWebEngineCore 0x00000001141f62ad 0x11204b000 + 35304109 3 QtWebEngineCore 0x00000001141f61af 0x11204b000 + 35303855 4 QtWebEngineCore 0x00000001141a9fdd 0x11204b000 + 34992093 5 QtWebEngineCore 0x00000001141d3005 0x11204b000 + 35160069 6 QtWebEngineCore 0x000000011422593c 0x11204b000 + 35498300 7 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 8 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 6:: DnsConfigService 0 libsystem_kernel.dylib 0x00007fff575c4bea kevent + 10 1 QtWebEngineCore 0x00000001144b7929 0x11204b000 + 38193449 2 QtWebEngineCore 0x00000001144b4c3d 0x11204b000 + 38181949 3 QtWebEngineCore 0x000000011426bc5c 0x11204b000 + 35785820 4 QtWebEngineCore 0x00000001141d3005 0x11204b000 + 35160069 5 QtWebEngineCore 0x000000011422593c 0x11204b000 + 35498300 6 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 7 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 8 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 9 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 7:: TaskSchedulerServiceThread 0 libsystem_kernel.dylib 0x00007fff575c4bea kevent + 10 1 QtWebEngineCore 0x00000001144b7929 0x11204b000 + 38193449 2 QtWebEngineCore 0x00000001144b4c3d 0x11204b000 + 38181949 3 QtWebEngineCore 0x000000011426bc44 0x11204b000 + 35785796 4 QtWebEngineCore 0x00000001141d3005 0x11204b000 + 35160069 5 QtWebEngineCore 0x00000001142149f4 0x11204b000 + 35428852 6 QtWebEngineCore 0x000000011422593c 0x11204b000 + 35498300 7 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 8 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 8:: TaskSchedulerForegroundWorker 0 libsystem_kernel.dylib 0x00007fff575ba1fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff575b9714 mach_msg + 60 2 QtWebEngineCore 0x00000001141f62ad 0x11204b000 + 35304109 3 QtWebEngineCore 0x00000001141f63a1 0x11204b000 + 35304353 4 QtWebEngineCore 0x000000011420dca8 0x11204b000 + 35400872 5 QtWebEngineCore 0x000000011420e5db 0x11204b000 + 35403227 6 QtWebEngineCore 0x000000011420e244 0x11204b000 + 35402308 7 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 8 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 9:: TaskSchedulerForegroundBlockingWorker 0 libsystem_kernel.dylib 0x00007fff575ba1fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff575b9714 mach_msg + 60 2 QtWebEngineCore 0x00000001141f62ad 0x11204b000 + 35304109 3 QtWebEngineCore 0x00000001141f63a1 0x11204b000 + 35304353 4 QtWebEngineCore 0x000000011420dca8 0x11204b000 + 35400872 5 QtWebEngineCore 0x000000011420e5db 0x11204b000 + 35403227 6 QtWebEngineCore 0x000000011420e244 0x11204b000 + 35402308 7 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 8 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 10:: TaskSchedulerBackgroundWorker 0 libsystem_kernel.dylib 0x00007fff575ba1fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff575b9714 mach_msg + 60 2 QtWebEngineCore 0x00000001141f62ad 0x11204b000 + 35304109 3 QtWebEngineCore 0x00000001141f63a1 0x11204b000 + 35304353 4 QtWebEngineCore 0x000000011420dca8 0x11204b000 + 35400872 5 QtWebEngineCore 0x000000011420e5db 0x11204b000 + 35403227 6 QtWebEngineCore 0x000000011420e1b4 0x11204b000 + 35402164 7 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 8 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 11:: TaskSchedulerBackgroundBlockingWorker 0 libsystem_kernel.dylib 0x00007fff575ba1fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff575b9714 mach_msg + 60 2 QtWebEngineCore 0x00000001141f62ad 0x11204b000 + 35304109 3 QtWebEngineCore 0x00000001141f63a1 0x11204b000 + 35304353 4 QtWebEngineCore 0x000000011420dca8 0x11204b000 + 35400872 5 QtWebEngineCore 0x000000011420e5db 0x11204b000 + 35403227 6 QtWebEngineCore 0x000000011420e1b4 0x11204b000 + 35402164 7 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 8 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 12:: Chrome_IOThread 0 libsystem_kernel.dylib 0x00007fff575c4bea kevent + 10 1 QtWebEngineCore 0x00000001144b7929 0x11204b000 + 38193449 2 QtWebEngineCore 0x00000001144b4c3d 0x11204b000 + 38181949 3 QtWebEngineCore 0x000000011426bc44 0x11204b000 + 35785796 4 QtWebEngineCore 0x00000001141d3005 0x11204b000 + 35160069 5 QtWebEngineCore 0x0000000113b38fa4 0x11204b000 + 28237732 6 QtWebEngineCore 0x000000011422593c 0x11204b000 + 35498300 7 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 8 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 13:: TaskSchedulerSingleThreadSharedBackgroundBlocking0 0 libsystem_kernel.dylib 0x00007fff575ba1fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff575b9714 mach_msg + 60 2 QtWebEngineCore 0x00000001141f62ad 0x11204b000 + 35304109 3 QtWebEngineCore 0x00000001141f61af 0x11204b000 + 35303855 4 QtWebEngineCore 0x000000011420dc9a 0x11204b000 + 35400858 5 QtWebEngineCore 0x000000011420e33f 0x11204b000 + 35402559 6 QtWebEngineCore 0x000000011420e1e4 0x11204b000 + 35402212 7 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 8 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 14:: CompositorTileWorker1/73731 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 QtWebEngineCore 0x0000000114263f28 0x11204b000 + 35753768 3 QtWebEngineCore 0x00000001151ec628 0x11204b000 + 52041256 4 QtWebEngineCore 0x0000000114224614 0x11204b000 + 35493396 5 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 6 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 7 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 8 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 15:: AudioThread 0 libsystem_kernel.dylib 0x00007fff575ba1fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff575b9714 mach_msg + 60 2 QtWebEngineCore 0x00000001141f62ad 0x11204b000 + 35304109 3 QtWebEngineCore 0x00000001141f61af 0x11204b000 + 35303855 4 QtWebEngineCore 0x00000001141a9fdd 0x11204b000 + 34992093 5 QtWebEngineCore 0x00000001141d3005 0x11204b000 + 35160069 6 QtWebEngineCore 0x000000011422593c 0x11204b000 + 35498300 7 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 8 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 16:: Chrome_InProcGpuThread 0 libsystem_kernel.dylib 0x00007fff575ba1fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff575b9714 mach_msg + 60 2 QtWebEngineCore 0x00000001141f62ad 0x11204b000 + 35304109 3 QtWebEngineCore 0x00000001141a9fd2 0x11204b000 + 34992082 4 QtWebEngineCore 0x00000001141d3005 0x11204b000 + 35160069 5 QtWebEngineCore 0x000000011422593c 0x11204b000 + 35498300 6 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 7 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 8 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 9 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 17:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff575c4bea kevent + 10 1 QtWebEngineCore 0x00000001144b7929 0x11204b000 + 38193449 2 QtWebEngineCore 0x00000001144b4c3d 0x11204b000 + 38181949 3 QtWebEngineCore 0x000000011426bc5c 0x11204b000 + 35785820 4 QtWebEngineCore 0x00000001141d3005 0x11204b000 + 35160069 5 QtWebEngineCore 0x000000011422593c 0x11204b000 + 35498300 6 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 7 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 8 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 9 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 18:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff575ba1fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff575b9714 mach_msg + 60 2 QtWebEngineCore 0x00000001141f62ad 0x11204b000 + 35304109 3 QtWebEngineCore 0x00000001141f61af 0x11204b000 + 35303855 4 QtWebEngineCore 0x00000001141a9fdd 0x11204b000 + 34992093 5 QtWebEngineCore 0x00000001141d3005 0x11204b000 + 35160069 6 QtWebEngineCore 0x000000011422593c 0x11204b000 + 35498300 7 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 8 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 19:: TaskSchedulerSingleThreadForegroundBlocking1 0 libsystem_kernel.dylib 0x00007fff575ba1fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff575b9714 mach_msg + 60 2 QtWebEngineCore 0x00000001141f62ad 0x11204b000 + 35304109 3 QtWebEngineCore 0x00000001141f61af 0x11204b000 + 35303855 4 QtWebEngineCore 0x000000011420dc9a 0x11204b000 + 35400858 5 QtWebEngineCore 0x000000011420e5db 0x11204b000 + 35403227 6 QtWebEngineCore 0x000000011420e2a4 0x11204b000 + 35402404 7 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 8 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 20:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff575ba1fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff575b9714 mach_msg + 60 2 QtWebEngineCore 0x00000001141f62ad 0x11204b000 + 35304109 3 QtWebEngineCore 0x00000001141f61af 0x11204b000 + 35303855 4 QtWebEngineCore 0x00000001141a9fdd 0x11204b000 + 34992093 5 QtWebEngineCore 0x00000001141d3005 0x11204b000 + 35160069 6 QtWebEngineCore 0x000000011422593c 0x11204b000 + 35498300 7 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 8 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 21:: TaskSchedulerForegroundWorker 0 libsystem_kernel.dylib 0x00007fff575ba1fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff575b9714 mach_msg + 60 2 QtWebEngineCore 0x00000001141f62ad 0x11204b000 + 35304109 3 QtWebEngineCore 0x00000001141f63a1 0x11204b000 + 35304353 4 QtWebEngineCore 0x000000011420dca8 0x11204b000 + 35400872 5 QtWebEngineCore 0x000000011420e5db 0x11204b000 + 35403227 6 QtWebEngineCore 0x000000011420e244 0x11204b000 + 35402308 7 QtWebEngineCore 0x0000000114265697 0x11204b000 + 35759767 8 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 22: 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 libopenblasp-r0.3.7.dylib 0x0000000142335c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 23: 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 libopenblasp-r0.3.7.dylib 0x0000000142335c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 24: 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 libopenblasp-r0.3.7.dylib 0x0000000142335c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 25: 0 libsystem_kernel.dylib 0x00007fff575c428a __workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fff5778b20e _pthread_wqthread + 1552 2 libsystem_pthread.dylib 0x00007fff5778abe9 start_wqthread + 13 Thread 26: 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 org.python.python 0x00000001034f5610 take_gil + 240 3 org.python.python 0x00000001034f5b6f PyEval_RestoreThread + 31 4 org.python.python 0x000000010358f969 acquire_timed + 121 5 org.python.python 0x000000010358f6dc lock_PyThread_acquire_lock + 44 6 org.python.python 0x000000010342b582 _PyMethodDef_RawFastCallKeywords + 722 7 org.python.python 0x0000000103431581 _PyMethodDescr_FastCallKeywords + 81 8 org.python.python 0x00000001034ffb8e call_function + 814 9 org.python.python 0x00000001034fc78a _PyEval_EvalFrameDefault + 26538 10 org.python.python 0x00000001035009bc _PyEval_EvalCodeWithName + 3276 11 org.python.python 0x000000010342a879 _PyFunction_FastCallKeywords + 217 12 org.python.python 0x00000001034ffb64 call_function + 772 13 org.python.python 0x00000001034fc78a _PyEval_EvalFrameDefault + 26538 14 org.python.python 0x00000001035009bc _PyEval_EvalCodeWithName + 3276 15 org.python.python 0x000000010342a879 _PyFunction_FastCallKeywords + 217 16 org.python.python 0x00000001034ffb64 call_function + 772 17 org.python.python 0x00000001034fc78a _PyEval_EvalFrameDefault + 26538 18 org.python.python 0x000000010342ad61 function_code_fastcall + 177 19 org.python.python 0x00000001034ffb64 call_function + 772 20 org.python.python 0x00000001034fc78a _PyEval_EvalFrameDefault + 26538 21 org.python.python 0x000000010342ad61 function_code_fastcall + 177 22 org.python.python 0x00000001034ffb64 call_function + 772 23 org.python.python 0x00000001034fc78a _PyEval_EvalFrameDefault + 26538 24 org.python.python 0x000000010342ad61 function_code_fastcall + 177 25 org.python.python 0x000000010342b883 _PyObject_Call_Prepend + 131 26 org.python.python 0x000000010342a9d8 PyObject_Call + 136 27 org.python.python 0x0000000103590207 t_bootstrap + 71 28 org.python.python 0x0000000103543cb9 pythread_wrapper + 25 29 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 30 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 31 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 27: 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 libOpenMM.dylib 0x0000000141537d21 OpenMM::threadBody(void*) + 65 3 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 28: 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 libOpenMM.dylib 0x0000000141537d21 OpenMM::threadBody(void*) + 65 3 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 29: 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 libOpenMM.dylib 0x0000000141537d21 OpenMM::threadBody(void*) + 65 3 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 30: 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 libOpenMM.dylib 0x0000000141537d21 OpenMM::threadBody(void*) + 65 3 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 31: 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 libOpenMM.dylib 0x0000000141537d21 OpenMM::threadBody(void*) + 65 3 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 32: 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 libOpenMM.dylib 0x0000000141537d21 OpenMM::threadBody(void*) + 65 3 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 33: 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 libOpenMM.dylib 0x0000000141537d21 OpenMM::threadBody(void*) + 65 3 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 34: 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 libOpenMM.dylib 0x0000000141537d21 OpenMM::threadBody(void*) + 65 3 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 35: 0 libsystem_kernel.dylib 0x00007fff575c3a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5778c589 _pthread_cond_wait + 732 2 libOpenMMOpenCL.dylib 0x00000001418653cd threadBody(void*) + 109 3 libsystem_pthread.dylib 0x00007fff5778b661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff5778b50d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff5778abf9 thread_start + 13 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x00007fff8fea6380 rcx: 0x0000000103895a48 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x0000000103895a80 rsp: 0x0000000103895a48 r8: 0x0000000103895f48 r9: 0x0000000000000010 r10: 0x00007fff8fea63c8 r11: 0x0000000000000206 r12: 0x0000000000000307 r13: 0x00007ffeec800fa0 r14: 0x0000000000000006 r15: 0x000000000000002d rip: 0x00007fff575c3b66 rfl: 0x0000000000000206 cr2: 0x00000001036037c8 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x1033f9000 - 0x1033f9ff3 +edu.ucsf.cgl.ChimeraX (1.0.0 - 1.0.0.0) /Applications/ChimeraX-1.0.app/Contents/MacOS/ChimeraX 0x103407000 - 0x103602fff +org.python.python (3.7.7, [c] 2001-2019 Python Software Foundation. - 3.7.7) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/Python 0x103a5b000 - 0x103a5cff7 +_heapq.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_heapq.cpython-37m-darwin.so 0x103b25000 - 0x103b28ff3 +zlib.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/zlib.cpython-37m-darwin.so 0x103b32000 - 0x103b46ff7 +libz.1.2.11.dylib (0) /Applications/ChimeraX-1.0.app/Contents/lib/libz.1.2.11.dylib 0x103b8f000 - 0x103b90ff7 +_bz2.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_bz2.cpython-37m-darwin.so 0x103b99000 - 0x103b9cfff +_lzma.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_lzma.cpython-37m-darwin.so 0x103ba7000 - 0x103ba7ffb +grp.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/grp.cpython-37m-darwin.so 0x103bef000 - 0x103bf4ffb +math.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/math.cpython-37m-darwin.so 0x103c00000 - 0x103c02ff3 +_hashlib.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_hashlib.cpython-37m-darwin.so 0x103c0b000 - 0x103c68ff7 +libssl.1.1.dylib (0) /Applications/ChimeraX-1.0.app/Contents/lib/libssl.1.1.dylib 0x103c97000 - 0x103e5eaf3 +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.0.app/Contents/lib/libcrypto.1.1.dylib 0x103ef7000 - 0x103efcff3 +_blake2.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_blake2.cpython-37m-darwin.so 0x103f06000 - 0x103f16ff3 +_sha3.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_sha3.cpython-37m-darwin.so 0x103f21000 - 0x103f21ffb +_bisect.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_bisect.cpython-37m-darwin.so 0x103f29000 - 0x103f2affb +_random.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_random.cpython-37m-darwin.so 0x103f33000 - 0x103f39ff3 +libqgif.dylib (0) /Applications/ChimeraX-1.0.app/Contents/lib/python3.7/site-packages/PyQt5/Qt/plugins/imageformats/libqgif.dylib 0x103f42000 - 0x103f49ffb +libqicns.dylib (0) /Applications/ChimeraX-1.0.app/Contents/lib/python3.7/site-packages/PyQt5/Qt/plugins/imageformats/libqicns.dylib 0x103f53000 - 0x103f58ff3 +libqico.dylib (0) /Applications/ChimeraX-1.0.app/Contents/lib/python3.7/site-packages/PyQt5/Qt/plugins/imageformats/libqico.dylib 0x103f61000 - 0x103f66ff7 +libqmacheif.dylib (0) /Applications/ChimeraX-1.0.app/Contents/lib/python3.7/site-packages/PyQt5/Qt/plugins/imageformats/libqmacheif.dylib 0x103f6f000 - 0x103f72ff3 +libqwbmp.dylib (0) /Applications/ChimeraX-1.0.app/Contents/lib/python3.7/site-packages/PyQt5/Qt/plugins/imageformats/libqwbmp.dylib 0x10403b000 - 0x104041ffb +_json.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_json.cpython-37m-darwin.so 0x10408a000 - 0x104097ff3 +_ssl.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_ssl.cpython-37m-darwin.so 0x1040ad000 - 0x1040b6ffb +_socket.cpython-37m-darwin.so (0) 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(1.600.0 - 312.103.12) /System/Library/PrivateFrameworks/SkyLight.framework/Versions/A/SkyLight 0x7fff51c89000 - 0x7fff51c96fff com.apple.SpeechRecognitionCore (4.6.1 - 4.6.1) /System/Library/PrivateFrameworks/SpeechRecognitionCore.framework/Versions/A/SpeechRecognitionCore 0x7fff51d48000 - 0x7fff51f86ff3 com.apple.spotlight.index (10.7.0 - 1191.8) /System/Library/PrivateFrameworks/SpotlightIndex.framework/Versions/A/SpotlightIndex 0x7fff52143000 - 0x7fff5216afff com.apple.StreamingZip (1.0 - 1) /System/Library/PrivateFrameworks/StreamingZip.framework/Versions/A/StreamingZip 0x7fff5216b000 - 0x7fff521dcffb com.apple.Suggestions (6.0 - 213) /System/Library/PrivateFrameworks/Suggestions.framework/Versions/A/Suggestions 0x7fff5283c000 - 0x7fff528c5fc7 com.apple.Symbolication (9.3 - 64033) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication 0x7fff528d6000 - 0x7fff528deffb com.apple.SymptomDiagnosticReporter (1.0 - 820.60.3) /System/Library/PrivateFrameworks/SymptomDiagnosticReporter.framework/Versions/A/SymptomDiagnosticReporter 0x7fff52b8b000 - 0x7fff52bb7fff com.apple.framework.SystemAdministration (1.0 - 1.0) /System/Library/PrivateFrameworks/SystemAdministration.framework/Versions/A/SystemAdministration 0x7fff52e36000 - 0x7fff52e3eff7 com.apple.TCC (1.0 - 1) /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC 0x7fff5304b000 - 0x7fff53108ff7 com.apple.TextureIO (3.7 - 3.7) /System/Library/PrivateFrameworks/TextureIO.framework/Versions/A/TextureIO 0x7fff5315f000 - 0x7fff5317affb com.apple.ToneKit (1.0 - 1) /System/Library/PrivateFrameworks/ToneKit.framework/Versions/A/ToneKit 0x7fff5317b000 - 0x7fff531a2fff com.apple.ToneLibrary (1.0 - 1) /System/Library/PrivateFrameworks/ToneLibrary.framework/Versions/A/ToneLibrary 0x7fff531b2000 - 0x7fff531b3fff com.apple.TrustEvaluationAgent (2.0 - 31) /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent 0x7fff531b9000 - 0x7fff53369fff com.apple.UIFoundation (1.0 - 547.9) /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation 0x7fff5403e000 - 0x7fff5410dff7 com.apple.ViewBridge (343.2 - 343.2) /System/Library/PrivateFrameworks/ViewBridge.framework/Versions/A/ViewBridge 0x7fff54ae5000 - 0x7fff54ae7ffb com.apple.loginsupport (1.0 - 1) /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport 0x7fff54ae8000 - 0x7fff54afdfff com.apple.login (3.0 - 3.0) /System/Library/PrivateFrameworks/login.framework/Versions/A/login 0x7fff54b28000 - 0x7fff54b55fff com.apple.contacts.vCard (1.0 - 2330.3) /System/Library/PrivateFrameworks/vCard.framework/Versions/A/vCard 0x7fff54c4e000 - 0x7fff54c81ff7 libclosured.dylib (551.5) /usr/lib/closure/libclosured.dylib 0x7fff54d3b000 - 0x7fff54d74ff7 libCRFSuite.dylib (41) /usr/lib/libCRFSuite.dylib 0x7fff54d75000 - 0x7fff54d80fff libChineseTokenizer.dylib (28) /usr/lib/libChineseTokenizer.dylib 0x7fff54d81000 - 0x7fff54e0eff7 libCoreStorage.dylib (546.50.1) /usr/lib/libCoreStorage.dylib 0x7fff54e12000 - 0x7fff54e13ff3 libDiagnosticMessagesClient.dylib (104) /usr/lib/libDiagnosticMessagesClient.dylib 0x7fff54e4a000 - 0x7fff55014ff3 libFosl_dynamic.dylib (17.8) /usr/lib/libFosl_dynamic.dylib 0x7fff55034000 - 0x7fff5503bfff libMatch.1.dylib (31) /usr/lib/libMatch.1.dylib 0x7fff5504c000 - 0x7fff5504cfff libOpenScriptingUtil.dylib (174) /usr/lib/libOpenScriptingUtil.dylib 0x7fff55183000 - 0x7fff55187ffb libScreenReader.dylib (562.18.5) /usr/lib/libScreenReader.dylib 0x7fff55188000 - 0x7fff55189ffb libSystem.B.dylib (1252.50.4) /usr/lib/libSystem.B.dylib 0x7fff55208000 - 0x7fff55209fff libThaiTokenizer.dylib (2.2) /usr/lib/libThaiTokenizer.dylib 0x7fff5521c000 - 0x7fff5521cfff libapple_crypto.dylib (109.50.15) /usr/lib/libapple_crypto.dylib 0x7fff5521d000 - 0x7fff55233ff7 libapple_nghttp2.dylib (1.24) /usr/lib/libapple_nghttp2.dylib 0x7fff55234000 - 0x7fff5525eff3 libarchive.2.dylib (54) /usr/lib/libarchive.2.dylib 0x7fff5525f000 - 0x7fff552e0fdf libate.dylib (1.13.1) /usr/lib/libate.dylib 0x7fff552e4000 - 0x7fff552e4ff3 libauto.dylib (187) /usr/lib/libauto.dylib 0x7fff552e5000 - 0x7fff5539effb libboringssl.dylib (109.50.15) /usr/lib/libboringssl.dylib 0x7fff5539f000 - 0x7fff553afff3 libbsm.0.dylib (39) /usr/lib/libbsm.0.dylib 0x7fff553b0000 - 0x7fff553bdffb libbz2.1.0.dylib (38) /usr/lib/libbz2.1.0.dylib 0x7fff553be000 - 0x7fff55414fff libc++.1.dylib (400.9) /usr/lib/libc++.1.dylib 0x7fff55415000 - 0x7fff55439ff7 libc++abi.dylib (400.8.2) /usr/lib/libc++abi.dylib 0x7fff5543b000 - 0x7fff5544bfff libcmph.dylib (6) /usr/lib/libcmph.dylib 0x7fff5544c000 - 0x7fff55463fcf libcompression.dylib (47.60.2) /usr/lib/libcompression.dylib 0x7fff5570e000 - 0x7fff55726ff7 libcoretls.dylib (155.50.1) /usr/lib/libcoretls.dylib 0x7fff55727000 - 0x7fff55728ff3 libcoretls_cfhelpers.dylib (155.50.1) /usr/lib/libcoretls_cfhelpers.dylib 0x7fff558c1000 - 0x7fff55a52fff libcrypto.35.dylib (22.50.3) /usr/lib/libcrypto.35.dylib 0x7fff55bed000 - 0x7fff55bf8ff7 libcsfde.dylib (546.50.1) /usr/lib/libcsfde.dylib 0x7fff55bf9000 - 0x7fff55c4eff3 libcups.2.dylib (462.2.10) /usr/lib/libcups.2.dylib 0x7fff55c79000 - 0x7fff55ccdfff libcurl.4.dylib (105.40.2) /usr/lib/libcurl.4.dylib 0x7fff55d8e000 - 0x7fff55d8efff libenergytrace.dylib (16) /usr/lib/libenergytrace.dylib 0x7fff55d8f000 - 0x7fff55da8ff3 libexpat.1.dylib (16.1.1.1) /usr/lib/libexpat.1.dylib 0x7fff55dc0000 - 0x7fff55dc4ff7 libgermantok.dylib (17) /usr/lib/libgermantok.dylib 0x7fff55dc5000 - 0x7fff55dcaff3 libheimdal-asn1.dylib (520.50.9) /usr/lib/libheimdal-asn1.dylib 0x7fff55df6000 - 0x7fff55ee7ff7 libiconv.2.dylib (51.50.1) /usr/lib/libiconv.2.dylib 0x7fff55ee8000 - 0x7fff5610fffb libicucore.A.dylib (59181.0.1) /usr/lib/libicucore.A.dylib 0x7fff5615c000 - 0x7fff5615dfff liblangid.dylib (128) /usr/lib/liblangid.dylib 0x7fff5615e000 - 0x7fff56177ffb liblzma.5.dylib (10) /usr/lib/liblzma.5.dylib 0x7fff56178000 - 0x7fff5618eff7 libmarisa.dylib (9) /usr/lib/libmarisa.dylib 0x7fff5618f000 - 0x7fff5623efff libmecab.1.0.0.dylib (779.7.6) /usr/lib/libmecab.1.0.0.dylib 0x7fff5623f000 - 0x7fff56467ff7 libmecabra.dylib (779.7.6) /usr/lib/libmecabra.dylib 0x7fff5663f000 - 0x7fff567bafff libnetwork.dylib (1229.70.2) /usr/lib/libnetwork.dylib 0x7fff56841000 - 0x7fff56c2f7e7 libobjc.A.dylib (723) /usr/lib/libobjc.A.dylib 0x7fff56c30000 - 0x7fff56c31fff libodfde.dylib (24.50.1) /usr/lib/libodfde.dylib 0x7fff56c42000 - 0x7fff56c46fff libpam.2.dylib (22) /usr/lib/libpam.2.dylib 0x7fff56c49000 - 0x7fff56c81ff7 libpcap.A.dylib (79.20.3) /usr/lib/libpcap.A.dylib 0x7fff56d00000 - 0x7fff56d1cffb libresolv.9.dylib (65.1) /usr/lib/libresolv.9.dylib 0x7fff56d1e000 - 0x7fff56d57ff3 libsandbox.1.dylib (765.70.1) /usr/lib/libsandbox.1.dylib 0x7fff56d58000 - 0x7fff56d6afff libsasl2.2.dylib (211.0.2) /usr/lib/libsasl2.2.dylib 0x7fff56d6b000 - 0x7fff56d6cff3 libspindump.dylib (252) /usr/lib/libspindump.dylib 0x7fff56d6d000 - 0x7fff56f00ff7 libsqlite3.dylib (274.8.1) /usr/lib/libsqlite3.dylib 0x7fff56f5c000 - 0x7fff56fafffb libssl.35.dylib (22.50.3) /usr/lib/libssl.35.dylib 0x7fff570d4000 - 0x7fff57134ff3 libusrtcp.dylib (1229.70.2) /usr/lib/libusrtcp.dylib 0x7fff57135000 - 0x7fff57138ffb libutil.dylib (51.20.1) /usr/lib/libutil.dylib 0x7fff57139000 - 0x7fff57146ff3 libxar.1.dylib (417.1) /usr/lib/libxar.1.dylib 0x7fff5714a000 - 0x7fff57231fff libxml2.2.dylib (31.19) /usr/lib/libxml2.2.dylib 0x7fff57232000 - 0x7fff5725afff libxslt.1.dylib (15.16) /usr/lib/libxslt.1.dylib 0x7fff5725b000 - 0x7fff5726dffb libz.1.dylib (70) /usr/lib/libz.1.dylib 0x7fff57309000 - 0x7fff5730dff7 libcache.dylib (80) /usr/lib/system/libcache.dylib 0x7fff5730e000 - 0x7fff57318ff3 libcommonCrypto.dylib (60118.50.1) /usr/lib/system/libcommonCrypto.dylib 0x7fff57319000 - 0x7fff57320fff libcompiler_rt.dylib (62) /usr/lib/system/libcompiler_rt.dylib 0x7fff57321000 - 0x7fff5732affb libcopyfile.dylib (146.50.5) /usr/lib/system/libcopyfile.dylib 0x7fff5732b000 - 0x7fff573b0ffb libcorecrypto.dylib (562.70.3) /usr/lib/system/libcorecrypto.dylib 0x7fff57438000 - 0x7fff57471ff7 libdispatch.dylib (913.60.3) /usr/lib/system/libdispatch.dylib 0x7fff57472000 - 0x7fff5748fff7 libdyld.dylib (551.5) /usr/lib/system/libdyld.dylib 0x7fff57490000 - 0x7fff57490ffb libkeymgr.dylib (28) /usr/lib/system/libkeymgr.dylib 0x7fff57491000 - 0x7fff5749dff3 libkxld.dylib (4570.71.82.5) /usr/lib/system/libkxld.dylib 0x7fff5749e000 - 0x7fff5749eff7 liblaunch.dylib (1205.70.16) /usr/lib/system/liblaunch.dylib 0x7fff5749f000 - 0x7fff574a3ffb libmacho.dylib (906) /usr/lib/system/libmacho.dylib 0x7fff574a4000 - 0x7fff574a6fff libquarantine.dylib (86.70.1) /usr/lib/system/libquarantine.dylib 0x7fff574a7000 - 0x7fff574a8ff3 libremovefile.dylib (45) /usr/lib/system/libremovefile.dylib 0x7fff574a9000 - 0x7fff574c0fff libsystem_asl.dylib (356.70.1) /usr/lib/system/libsystem_asl.dylib 0x7fff574c1000 - 0x7fff574c1fff libsystem_blocks.dylib (67) /usr/lib/system/libsystem_blocks.dylib 0x7fff574c2000 - 0x7fff5754bff7 libsystem_c.dylib (1244.50.9) /usr/lib/system/libsystem_c.dylib 0x7fff5754c000 - 0x7fff5754fffb libsystem_configuration.dylib (963.50.9) /usr/lib/system/libsystem_configuration.dylib 0x7fff57550000 - 0x7fff57553ffb libsystem_coreservices.dylib (51) /usr/lib/system/libsystem_coreservices.dylib 0x7fff57554000 - 0x7fff57555fff libsystem_darwin.dylib (1244.50.9) /usr/lib/system/libsystem_darwin.dylib 0x7fff57556000 - 0x7fff5755cffb libsystem_dnssd.dylib (878.70.4) /usr/lib/system/libsystem_dnssd.dylib 0x7fff5755d000 - 0x7fff575a6ff7 libsystem_info.dylib (517.30.1) /usr/lib/system/libsystem_info.dylib 0x7fff575a7000 - 0x7fff575cdff7 libsystem_kernel.dylib (4570.71.82.5) /usr/lib/system/libsystem_kernel.dylib 0x7fff575ce000 - 0x7fff57619fcb libsystem_m.dylib (3147.50.1) /usr/lib/system/libsystem_m.dylib 0x7fff5761a000 - 0x7fff57639ff7 libsystem_malloc.dylib (140.50.7) /usr/lib/system/libsystem_malloc.dylib 0x7fff5763a000 - 0x7fff5776aff7 libsystem_network.dylib (1229.70.2) /usr/lib/system/libsystem_network.dylib 0x7fff5776b000 - 0x7fff57775ffb libsystem_networkextension.dylib (767.70.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff57776000 - 0x7fff5777fff3 libsystem_notify.dylib (172) /usr/lib/system/libsystem_notify.dylib 0x7fff57780000 - 0x7fff57787ff7 libsystem_platform.dylib (161.50.1) /usr/lib/system/libsystem_platform.dylib 0x7fff57788000 - 0x7fff57793fff libsystem_pthread.dylib (301.50.1) /usr/lib/system/libsystem_pthread.dylib 0x7fff57794000 - 0x7fff57797fff libsystem_sandbox.dylib (765.70.1) /usr/lib/system/libsystem_sandbox.dylib 0x7fff57798000 - 0x7fff57799ff3 libsystem_secinit.dylib (30) /usr/lib/system/libsystem_secinit.dylib 0x7fff5779a000 - 0x7fff577a1ff7 libsystem_symptoms.dylib (820.60.3) /usr/lib/system/libsystem_symptoms.dylib 0x7fff577a2000 - 0x7fff577b6ff7 libsystem_trace.dylib (829.70.2) /usr/lib/system/libsystem_trace.dylib 0x7fff577b8000 - 0x7fff577bdff7 libunwind.dylib (35.3) /usr/lib/system/libunwind.dylib 0x7fff577be000 - 0x7fff577ebfff libxpc.dylib (1205.70.16) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 3 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 2265676 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=797.9M resident=0K(0%) swapped_out_or_unallocated=797.9M(100%) Writable regions: Total=4.8G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=4.8G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 384K 3 Activity Tracing 256K 2 CG backing stores 12.7M 9 CG image 148K 19 CoreAnimation 172K 37 CoreGraphics 8K 2 CoreImage 140K 34 CoreUI image data 3124K 38 CoreUI image file 216K 6 Foundation 4K 2 Image IO 16K 2 Kernel Alloc Once 8K 2 MALLOC 3.0G 227 MALLOC guard page 48K 11 MALLOC_LARGE (reserved) 420K 3 reserved VM address space (unallocated) Memory Tag 242 12K 2 Memory Tag 251 12K 2 OpenCL 1.1G 24 OpenCL (reserved) 4504K 18 reserved VM address space (unallocated) OpenGL GLSL 512K 7 PROTECTED_MEMORY 4K 2 STACK GUARD 140K 36 Stack 157.8M 37 Stack Guard 56.0M 2 VM_ALLOCATE 369.0M 269 VM_ALLOCATE (reserved) 128.0M 3 reserved VM address space (unallocated) __DATA 49.1M 598 __FONT_DATA 4K 2 __GLSLBUILTINS 2588K 2 __LINKEDIT 233.8M 219 __TEXT 564.0M 551 __UNICODE 560K 2 mapped file 83.1M 79 shared memory 1200K 20 =========== ======= ======= TOTAL 5.7G 2238 TOTAL, minus reserved VM space 5.6G 2238 System Profile: Network Service: Thunderbolt Ethernet, Ethernet, en4 Network Service: Wi-Fi, AirPort, en0 Thunderbolt Bus: MacBook Pro, Apple Inc., 27.1 Boot Volume File System Type: apfs Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80AD, 0x484D54343147533642465238412D50422020 Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80AD, 0x484D54343147533642465238412D50422020 USB Device: USB 3.0 Bus USB Device: Apple Internal Keyboard / Trackpad USB Device: Bluetooth USB Host Controller USB Device: USB Receiver Serial ATA Device: APPLE SSD SM1024G, 1 TB Model: MacBookPro11,4, BootROM 199.0.0.0.0, 4 processors, Intel Core i7, 2.8 GHz, 16 GB, SMC 2.29f24 Graphics: Intel Iris Pro, Intel Iris Pro, Built-In AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x152), Broadcom BCM43xx 1.0 (7.77.37.33.1a1) Bluetooth: Version 6.0.7f22, 3 services, 27 devices, 1 incoming serial ports Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/misupov/work/biomex/yarden_em/manuscript/revision/maps/maps and > coordinates for review 26_8_2020/6ZZ7_NAD_supp.pdb"" 6ZZ7_NAD_supp.pdb title: \--- [more info...] Chain information for 6ZZ7_NAD_supp.pdb #1 --- Chain | Description A B C D E F G H | No description available Non-standard residues in 6ZZ7_NAD_supp.pdb #1 --- NAD — (NAD) OpenGL version: 4.1 INTEL-10.36.32 OpenGL renderer: Intel Iris Pro OpenGL Engine OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro11,4 Processor Name: Intel Core i7 Processor Speed: 2.8 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 6 MB Memory: 16 GB Boot ROM Version: 199.0.0.0.0 SMC Version (system): 2.29f24 Software: System Software Overview: System Version: macOS 10.13.6 (17G14019) Kernel Version: Darwin 17.7.0 Time since boot: 62 days 7:43 Graphics/Displays: Intel Iris Pro: Chipset Model: Intel Iris Pro Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x0d26 Revision ID: 0x0008 Metal: Supported, feature set macOS GPUFamily1 v3 Displays: PLX2783H: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60 Hz Framebuffer Depth: 24-Bit Color (ARGB8888) Display Serial Number: 1128161001888 Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 }}} " defect closed normal Third Party can't reproduce Tom Goddard all ChimeraX