id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3743 ISOLDE crash on startup (divide by zero; structure-prediction program model) jrf296@… Tristan Croll "{{{ The following bug report has been submitted: Platform: Darwin-18.7.0-x86_64-i386-64bit ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [68455] Path: /programs/*/ChimeraX.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.0.0 (1.0.0.0) Code Type: X86-64 (Native) Parent Process: ??? [68454] Responsible: ChimeraX [68455] User ID: 501 Date/Time: 2020-09-20 09:50:31.550 -0400 OS Version: Mac OS X 10.14.6 (18G4032) Report Version: 12 Anonymous UUID: 54D077B8-EF33-2349-CA9A-CE72AF1AD066 Sleep/Wake UUID: A0B57D64-CD70-4B7D-8BE7-95B130DC7880 Time Awake Since Boot: 340000 seconds Time Since Wake: 58000 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_ARITHMETIC (SIGFPE) Exception Codes: EXC_I386_DIV (divide by zero) Exception Note: EXC_CORPSE_NOTIFY Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff650892c2 __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff65144bf1 pthread_kill + 284 2 libsystem_c.dylib 0x00007fff64fa6d8a raise + 26 3 libsystem_platform.dylib 0x00007fff65139b5d _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 clipper_python.cpython-37m-darwin.so 0x000000012b8e6f3c 0x12b81c000 + 831292 6 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0x1117ac000 + 34992093 5 QtWebEngineCore 0x0000000113934005 0x1117ac000 + 35160069 6 QtWebEngineCore 0x000000011398693c 0x1117ac000 + 35498300 7 QtWebEngineCore 0x00000001139c6697 0x1117ac000 + 35759767 8 libsystem_pthread.dylib 0x00007fff651422eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff65145249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff6514140d thread_start + 13 Thread 14:: Chrome_InProcGpuThread 0 libsystem_kernel.dylib 0x00007fff6508321a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff65083768 mach_msg + 60 2 QtWebEngineCore 0x00000001139572ad 0x1117ac000 + 35304109 3 QtWebEngineCore 0x000000011390afd2 0x1117ac000 + 34992082 4 QtWebEngineCore 0x0000000113934005 0x1117ac000 + 35160069 5 QtWebEngineCore 0x000000011398693c 0x1117ac000 + 35498300 6 QtWebEngineCore 0x00000001139c6697 0x1117ac000 + 35759767 7 libsystem_pthread.dylib 0x00007fff651422eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff65145249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff6514140d thread_start + 13 Thread 15:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff6508978a kevent + 10 1 QtWebEngineCore 0x0000000113c18929 0x1117ac000 + 38193449 2 QtWebEngineCore 0x0000000113c15c3d 0x1117ac000 + 38181949 3 QtWebEngineCore 0x00000001139ccc5c 0x1117ac000 + 35785820 4 QtWebEngineCore 0x0000000113934005 0x1117ac000 + 35160069 5 QtWebEngineCore 0x000000011398693c 0x1117ac000 + 35498300 6 QtWebEngineCore 0x00000001139c6697 0x1117ac000 + 35759767 7 libsystem_pthread.dylib 0x00007fff651422eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff65145249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff6514140d thread_start + 13 Thread 16:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6508321a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff65083768 mach_msg + 60 2 QtWebEngineCore 0x00000001139572ad 0x1117ac000 + 35304109 3 QtWebEngineCore 0x00000001139571af 0x1117ac000 + 35303855 4 QtWebEngineCore 0x000000011390afdd 0x1117ac000 + 34992093 5 QtWebEngineCore 0x0000000113934005 0x1117ac000 + 35160069 6 QtWebEngineCore 0x000000011398693c 0x1117ac000 + 35498300 7 QtWebEngineCore 0x00000001139c6697 0x1117ac000 + 35759767 8 libsystem_pthread.dylib 0x00007fff651422eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff65145249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff6514140d thread_start + 13 Thread 17:: TaskSchedulerSingleThreadForegroundBlocking1 0 libsystem_kernel.dylib 0x00007fff6508321a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff65083768 mach_msg + 60 2 QtWebEngineCore 0x00000001139572ad 0x1117ac000 + 35304109 3 QtWebEngineCore 0x00000001139571af 0x1117ac000 + 35303855 4 QtWebEngineCore 0x000000011396ec9a 0x1117ac000 + 35400858 5 QtWebEngineCore 0x000000011396f5db 0x1117ac000 + 35403227 6 QtWebEngineCore 0x000000011396f2a4 0x1117ac000 + 35402404 7 QtWebEngineCore 0x00000001139c6697 0x1117ac000 + 35759767 8 libsystem_pthread.dylib 0x00007fff651422eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff65145249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff6514140d thread_start + 13 Thread 18:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6508321a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff65083768 mach_msg + 60 2 QtWebEngineCore 0x00000001139572ad 0x1117ac000 + 35304109 3 QtWebEngineCore 0x00000001139571af 0x1117ac000 + 35303855 4 QtWebEngineCore 0x000000011390afdd 0x1117ac000 + 34992093 5 QtWebEngineCore 0x0000000113934005 0x1117ac000 + 35160069 6 QtWebEngineCore 0x000000011398693c 0x1117ac000 + 35498300 7 QtWebEngineCore 0x00000001139c6697 0x1117ac000 + 35759767 8 libsystem_pthread.dylib 0x00007fff651422eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff65145249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff6514140d thread_start + 13 Thread 19:: TaskSchedulerForegroundWorker 0 libsystem_kernel.dylib 0x00007fff6508321a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff65083768 mach_msg + 60 2 QtWebEngineCore 0x00000001139572ad 0x1117ac000 + 35304109 3 QtWebEngineCore 0x00000001139573a1 0x1117ac000 + 35304353 4 QtWebEngineCore 0x000000011396eca8 0x1117ac000 + 35400872 5 QtWebEngineCore 0x000000011396f5db 0x1117ac000 + 35403227 6 QtWebEngineCore 0x000000011396f244 0x1117ac000 + 35402308 7 QtWebEngineCore 0x00000001139c6697 0x1117ac000 + 35759767 8 libsystem_pthread.dylib 0x00007fff651422eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff65145249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff6514140d thread_start + 13 Thread 20: 0 libsystem_pthread.dylib 0x00007fff651413f0 start_wqthread + 0 Thread 21: 0 libsystem_pthread.dylib 0x00007fff651413f0 start_wqthread + 0 Thread 22: 0 libsystem_pthread.dylib 0x00007fff651413f0 start_wqthread + 0 Thread 23: 0 libsystem_pthread.dylib 0x00007fff651413f0 start_wqthread + 0 Thread 24:: TaskSchedulerForegroundWorker 0 libsystem_kernel.dylib 0x00007fff6508321a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff65083768 mach_msg + 60 2 QtWebEngineCore 0x00000001139572ad 0x1117ac000 + 35304109 3 QtWebEngineCore 0x00000001139573a1 0x1117ac000 + 35304353 4 QtWebEngineCore 0x000000011396eca8 0x1117ac000 + 35400872 5 QtWebEngineCore 0x000000011396f33f 0x1117ac000 + 35402559 6 QtWebEngineCore 0x000000011396f244 0x1117ac000 + 35402308 7 QtWebEngineCore 0x00000001139c6697 0x1117ac000 + 35759767 8 libsystem_pthread.dylib 0x00007fff651422eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff65145249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff6514140d thread_start + 13 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x000000010cba95c0 rcx: 0x0000000106bd2a48 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x0000000000000008 rbp: 0x0000000106bd2a80 rsp: 0x0000000106bd2a48 r8: 0x0000000106bd2f48 r9: 0x51a3f0d45844b9ba r10: 0x000000010cba966c r11: 0x0000000000000287 r12: 0x0000000000000307 r13: 0x00007ffee951207c r14: 0x0000000000000008 r15: 0x000000000000002d rip: 0x00007fff650892c2 rfl: 0x0000000000000286 cr2: 0x0000000106950f54 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x1066e5000 - 0x1066e5ff3 +edu.ucsf.cgl.ChimeraX (1.0.0 - 1.0.0.0) /programs/*/ChimeraX.app/Contents/MacOS/ChimeraX 0x1066f2000 - 0x1068edfff +org.python.python (3.7.7, [c] 2001-2019 Python Software Foundation. - 3.7.7) /opt/sbgrid/*/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/Python 0x106d98000 - 0x106d99ff7 +_heapq.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_heapq.cpython-37m-darwin.so 0x106e62000 - 0x106e65ff3 +zlib.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/zlib.cpython-37m-darwin.so 0x106e6f000 - 0x106e83ff7 +libz.1.dylib (0) /opt/sbgrid/*/ChimeraX-1.0.app/Contents/lib/libz.1.dylib 0x106ed7000 - 0x106ed8ff7 +_bz2.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_bz2.cpython-37m-darwin.so 0x106ee1000 - 0x106ee4fff +_lzma.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_lzma.cpython-37m-darwin.so 0x106eef000 - 0x106eefffb +grp.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/grp.cpython-37m-darwin.so 0x106f37000 - 0x106f3cffb +math.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/math.cpython-37m-darwin.so 0x106f48000 - 0x106f4aff3 +_hashlib.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_hashlib.cpython-37m-darwin.so 0x106f53000 - 0x106fb0ff7 +libssl.1.1.dylib (0) /opt/sbgrid/*/ChimeraX-1.0.app/Contents/lib/libssl.1.1.dylib 0x106fdf000 - 0x1071a6af3 +libcrypto.1.1.dylib (0) /opt/sbgrid/*/ChimeraX-1.0.app/Contents/lib/libcrypto.1.1.dylib 0x10723f000 - 0x107244ff3 +_blake2.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_blake2.cpython-37m-darwin.so 0x10724e000 - 0x10725eff3 +_sha3.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_sha3.cpython-37m-darwin.so 0x107269000 - 0x107269ffb +_bisect.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_bisect.cpython-37m-darwin.so 0x107271000 - 0x107272ffb +_random.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_random.cpython-37m-darwin.so 0x107383000 - 0x107389ffb +_json.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_json.cpython-37m-darwin.so 0x1073d2000 - 0x1073dfff3 +_ssl.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_ssl.cpython-37m-darwin.so 0x1073f5000 - 0x1073feffb +_socket.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_socket.cpython-37m-darwin.so 0x107450000 - 0x107453fff +select.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/select.cpython-37m-darwin.so 0x10745d000 - 0x107461ff3 +_struct.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_struct.cpython-37m-darwin.so 0x10746f000 - 0x107473ff7 +binascii.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/binascii.cpython-37m-darwin.so 0x10757c000 - 0x10758aff3 +_datetime.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_datetime.cpython-37m-darwin.so 0x1075da000 - 0x1075daff3 +_scproxy.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_scproxy.cpython-37m-darwin.so 0x1075e2000 - 0x107620fff +_decimal.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_decimal.cpython-37m-darwin.so 0x107684000 - 0x1076b1ff3 +pyexpat.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/pyexpat.cpython-37m-darwin.so 0x1076c9000 - 0x1076caff3 +_queue.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_queue.cpython-37m-darwin.so 0x107754000 - 0x107755fff +lapack_lite.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/linalg/lapack_lite.cpython-37m-darwin.so 0x1077a0000 - 0x1077a1fff +_posixsubprocess.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_posixsubprocess.cpython-37m-darwin.so 0x10787a000 - 0x10788cfff +_pickle.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_pickle.cpython-37m-darwin.so 0x10790f000 - 0x107912ffb +_csv.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_csv.cpython-37m-darwin.so 0x107a9d000 - 0x107e00fe7 +_multiarray_umath.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/_multiarray_umath.cpython-37m-darwin.so 0x107f26000 - 0x10b991ae7 +libopenblasp-r0.3.7.dylib (0) /opt/sbgrid/*/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/.dylibs/libopenblasp-r0.3.7.dylib 0x10bc9a000 - 0x10bdb1ff7 +libgfortran.3.dylib (0) /opt/sbgrid/*/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/.dylibs/libgfortran.3.dylib 0x10be1f000 - 0x10be55fff +libquadmath.0.dylib (0) /opt/sbgrid/*/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/.dylibs/libquadmath.0.dylib 0x10be69000 - 0x10be7eff7 +libgcc_s.1.dylib (0) /opt/sbgrid/*/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/.dylibs/libgcc_s.1.dylib 0x10c020000 - 0x10c02dff3 +_multiarray_tests.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/_multiarray_tests.cpython-37m-darwin.so 0x10c043000 - 0x10c055ff7 +_ctypes.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_ctypes.cpython-37m-darwin.so 0x10c0eb000 - 0x10c104ffb +_umath_linalg.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/linalg/_umath_linalg.cpython-37m-darwin.so 0x10c1d8000 - 0x10c1e9ffb +_pocketfft_internal.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/fft/_pocketfft_internal.cpython-37m-darwin.so 0x10c272000 - 0x10c2defff +mtrand.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/mtrand.cpython-37m-darwin.so 0x10c339000 - 0x10c358fff +_bit_generator.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_bit_generator.cpython-37m-darwin.so 0x10c379000 - 0x10c3aaff3 +_common.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_common.cpython-37m-darwin.so 0x10c3c5000 - 0x10c419ffb +_bounded_integers.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_bounded_integers.cpython-37m-darwin.so 0x10c442000 - 0x10c455ffb +_mt19937.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_mt19937.cpython-37m-darwin.so 0x10c466000 - 0x10c473ff7 +_philox.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_philox.cpython-37m-darwin.so 0x10c483000 - 0x10c48dffb +_pcg64.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_pcg64.cpython-37m-darwin.so 0x10c49d000 - 0x10c4a5ffb +_sfc64.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_sfc64.cpython-37m-darwin.so 0x10c4b4000 - 0x10c537ff7 +_generator.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_generator.cpython-37m-darwin.so 0x10c697000 - 0x10c698ff7 +_appdirs.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/_appdirs.so 0x10c6a0000 - 0x10c6a1ffb +libappdirs.dylib (0) /opt/sbgrid/*/ChimeraX-1.0.app/Contents/lib/libappdirs.dylib 0x10c6a9000 - 0x10c6cbff7 +_serialize.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/_serialize.cpython-37m-darwin.so 0x10c6eb000 - 0x10c703ffb +_cmsgpack.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/msgpack/_cmsgpack.cpython-37m-darwin.so 0x10c75c000 - 0x10c7b7ff7 +_imaging.cpython-37m-darwin.so (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PIL/_imaging.cpython-37m-darwin.so 0x10c7e6000 - 0x10c81eff3 +libjpeg.9.dylib (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PIL/.dylibs/libjpeg.9.dylib 0x10c834000 - 0x10c8aaffb +libopenjp2.2.3.1.dylib (0) /programs/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PIL/.dylibs/libopenjp2.2.3.1.dylib 0x10c8bb000 - 0x10c8d6ff7 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libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib 0x7fff64f7f000 - 0x7fff64f96ff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib 0x7fff64f97000 - 0x7fff64f97ff7 libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib 0x7fff64f98000 - 0x7fff6501ffff libsystem_c.dylib (1272.250.1) /usr/lib/system/libsystem_c.dylib 0x7fff65020000 - 0x7fff65023ffb libsystem_configuration.dylib (963.270.3) /usr/lib/system/libsystem_configuration.dylib 0x7fff65024000 - 0x7fff65027ff7 libsystem_coreservices.dylib (66) /usr/lib/system/libsystem_coreservices.dylib 0x7fff65028000 - 0x7fff6502efff libsystem_darwin.dylib (1272.250.1) /usr/lib/system/libsystem_darwin.dylib 0x7fff6502f000 - 0x7fff65035ffb libsystem_dnssd.dylib (878.270.3) /usr/lib/system/libsystem_dnssd.dylib 0x7fff65036000 - 0x7fff65081ffb libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib 0x7fff65082000 - 0x7fff650aaff7 libsystem_kernel.dylib (4903.278.28) /usr/lib/system/libsystem_kernel.dylib 0x7fff650ab000 - 0x7fff650f6ff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib 0x7fff650f7000 - 0x7fff65121fff libsystem_malloc.dylib (166.270.1) /usr/lib/system/libsystem_malloc.dylib 0x7fff65122000 - 0x7fff6512cff7 libsystem_networkextension.dylib (767.250.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff6512d000 - 0x7fff65134fff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib 0x7fff65135000 - 0x7fff6513efef libsystem_platform.dylib (177.270.1) /usr/lib/system/libsystem_platform.dylib 0x7fff6513f000 - 0x7fff65149ff7 libsystem_pthread.dylib (330.250.2) /usr/lib/system/libsystem_pthread.dylib 0x7fff6514a000 - 0x7fff6514dff7 libsystem_sandbox.dylib (851.270.1) /usr/lib/system/libsystem_sandbox.dylib 0x7fff6514e000 - 0x7fff65150ff3 libsystem_secinit.dylib (30.260.2) /usr/lib/system/libsystem_secinit.dylib 0x7fff65151000 - 0x7fff65158ff3 libsystem_symptoms.dylib (820.267.1) /usr/lib/system/libsystem_symptoms.dylib 0x7fff65159000 - 0x7fff6516eff7 libsystem_trace.dylib (906.260.2) /usr/lib/system/libsystem_trace.dylib 0x7fff65170000 - 0x7fff65175ffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff65176000 - 0x7fff651a5fff libxpc.dylib (1336.261.4) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 225281 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=763.3M resident=0K(0%) swapped_out_or_unallocated=763.3M(100%) Writable regions: Total=528.6M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=528.6M(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 384K 3 Activity Tracing 256K 1 CG backing stores 736K 6 CG image 628K 24 CoreAnimation 172K 25 CoreGraphics 8K 1 CoreImage 108K 25 CoreUI image data 1576K 34 CoreUI image file 568K 8 Dispatch continuations 8192K 1 Foundation 4K 1 Kernel Alloc Once 8K 1 MALLOC 234.5M 187 MALLOC guard page 32K 7 MALLOC_LARGE (reserved) 256K 2 reserved VM address space (unallocated) Memory Tag 242 12K 1 OpenGL GLSL 512K 6 PROTECTED_MEMORY 4K 1 STACK GUARD 96K 24 Stack 155.2M 26 Stack Guard 56.0M 1 VM_ALLOCATE 125.0M 164 __DATA 50.8M 552 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 252.0M 168 __TEXT 511.3M 520 __UNICODE 564K 1 mapped file 99.4M 63 shared memory 1728K 24 =========== ======= ======= TOTAL 1.5G 1879 TOTAL, minus reserved VM space 1.5G 1879 Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 INTEL-12.10.17 OpenGL renderer: Intel HD Graphics 4000 OpenGL Engine OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro9,2 Processor Name: Intel Core i7 Processor Speed: 2.9 GHz Number of Processors: 1 Total Number of Cores: 2 L2 Cache (per Core): 256 KB L3 Cache: 4 MB Hyper-Threading Technology: Enabled Memory: 8 GB Boot ROM Version: 230.0.0.0.0 SMC Version (system): 2.2f44 Sudden Motion Sensor: State: Enabled Software: System Software Overview: System Version: macOS 10.14.6 (18G4032) Kernel Version: Darwin 18.7.0 Time since boot: 16 days 23:39 Graphics/Displays: Intel HD Graphics 4000: Chipset Model: Intel HD Graphics 4000 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x0166 Revision ID: 0x0009 Metal: Supported, feature set macOS GPUFamily1 v4 Displays: Color LCD: Display Type: LCD Resolution: 1280 x 800 UI Looks like: 1280 x 800 Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 }}} " defect closed normal Third Party fixed Tom Goddard all ChimeraX