id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3692 Crash during popup window chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Darwin-18.7.0-x86_64-i386-64bit ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [59858] Path: /Applications/ChimeraX-1.0.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.0.0 (1.0.0.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [59858] User ID: 502 Date/Time: 2020-09-07 09:59:22.649 +1000 OS Version: Mac OS X 10.14.6 (18G4032) Report Version: 12 Bridge OS Version: 4.4 (17P4263) Anonymous UUID: A86B37E2-F937-897D-1E68-B66C207A9517 Sleep/Wake UUID: 1F7CA146-70EA-4450-865B-4137C9301DE0 Time Awake Since Boot: 1900000 seconds Time Since Wake: 7400 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000028 Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0x28: --> __TEXT 0000000104edb000-0000000104edc000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.0.app/Contents/MacOS/ChimeraX Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff6f60e2c2 __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff6f6c9bf1 pthread_kill + 284 2 libsystem_c.dylib 0x00007fff6f52bd8a raise + 26 3 libsystem_platform.dylib 0x00007fff6f6beb5d _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 libqcocoa.dylib 0x000000011cea70cb 0x11ce8f000 + 98507 6 libqcocoa.dylib 0x000000011cea747f 0x11ce8f000 + 99455 7 com.apple.Foundation 0x00007fff4580e188 -[__NSObserver _doit:] + 299 8 com.apple.CoreFoundation 0x00007fff435d2346 __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 12 9 com.apple.CoreFoundation 0x00007fff435d22c0 ___CFXRegistrationPost_block_invoke + 63 10 com.apple.CoreFoundation 0x00007fff435d222a _CFXRegistrationPost + 404 11 com.apple.CoreFoundation 0x00007fff435da6d8 ___CFXNotificationPost_block_invoke + 87 12 com.apple.CoreFoundation 0x00007fff43543064 -[_CFXNotificationRegistrar find:object:observer:enumerator:] + 1642 13 com.apple.CoreFoundation 0x00007fff43542417 _CFXNotificationPost + 732 14 com.apple.Foundation 0x00007fff457c9a7b -[NSNotificationCenter postNotificationName:object:userInfo:] + 66 15 com.apple.AppKit 0x00007fff41444047 -[NSWindow _postWindowDidChangeBackingPropertiesAndDisplayWindowForPreviousBackingScaleFactor:previousColorSpace:] + 197 16 com.apple.AppKit 0x00007fff40dc0e8d __67-[NSWindow _updateSettingsSendingScreenChangeNotificationIfNeeded:]_block_invoke + 209 17 com.apple.AppKit 0x00007fff40b9c970 NSPerformVisuallyAtomicChange + 132 18 com.apple.AppKit 0x00007fff40c44159 -[NSWindow _updateSettingsSendingScreenChangeNotificationIfNeeded:] + 188 19 com.apple.AppKit 0x00007fff40c43556 -[NSWindow _setFrame:updateBorderViewSize:] + 994 20 com.apple.AppKit 0x00007fff40c42e5a -[NSWindow _oldPlaceWindow:] + 519 21 com.apple.AppKit 0x00007fff40c4241f -[NSWindow _setFrameCommon:display:stashSize:] + 2814 22 com.apple.AppKit 0x00007fff40c4190e -[NSWindow _setFrame:display:allowImplicitAnimation:stashSize:] + 192 23 com.apple.AppKit 0x00007fff40da5812 -[NSWindow setFrameOrigin:] + 393 24 com.apple.AppKit 0x00007fff40eade41 -[NSWindow _fromScreenCommonCode:] + 275 25 com.apple.AppKit 0x00007fff40eadd1f -[NSWindow 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0x0000000104f089d8 PyObject_Call + 136 55 QtCore.so 0x0000000108058f17 PyQtSlot::call(_object*, _object*) const + 39 56 QtCore.so 0x0000000108058e26 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374 57 QtCore.so 0x0000000108059925 PyQtSlotProxy::unislot(void**) + 85 58 QtCore.so 0x000000010805989a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58 59 QtCore 0x00000001133532dd QMetaObject::activate(QObject*, int, int, void**) + 1773 60 QtCore 0x000000011335b392 QTimer::timerEvent(QTimerEvent*) + 98 61 QtCore.so 0x0000000107f4f028 sipQTimer::timerEvent(QTimerEvent*) + 120 62 QtCore 0x000000011334bc56 QObject::event(QEvent*) + 102 63 QtCore.so 0x0000000107f4ee9b sipQTimer::event(QEvent*) + 187 64 QtWidgets 0x000000011263670d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269 65 QtWidgets 0x0000000112637b12 QApplication::notify(QObject*, QEvent*) + 594 66 QtWidgets.so 0x00000001121f63ca sipQApplication::notify(QObject*, QEvent*) + 234 67 QtCore 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libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 3: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libopenblasp-r0.3.7.dylib 0x0000000108675c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 4:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff6f60821a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6f608768 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff4356f99e __CFRunLoopServiceMachPort + 328 3 com.apple.CoreFoundation 0x00007fff4356ef0c __CFRunLoopRun + 1612 4 com.apple.CoreFoundation 0x00007fff4356e66e CFRunLoopRunSpecific + 455 5 com.apple.AppKit 0x00007fff40b6c4a2 _NSEventThread + 175 6 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 7 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 8 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 5:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6f60821a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6f608768 mach_msg + 60 2 QtWebEngineCore 0x0000000115df02ad 0x113c45000 + 35304109 3 QtWebEngineCore 0x0000000115df01af 0x113c45000 + 35303855 4 QtWebEngineCore 0x0000000115da3fdd 0x113c45000 + 34992093 5 QtWebEngineCore 0x0000000115dcd005 0x113c45000 + 35160069 6 QtWebEngineCore 0x0000000115e1f93c 0x113c45000 + 35498300 7 QtWebEngineCore 0x0000000115e5f697 0x113c45000 + 35759767 8 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 6:: DnsConfigService 0 libsystem_kernel.dylib 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0x0000000115df03a1 0x113c45000 + 35304353 4 QtWebEngineCore 0x0000000115e07ca8 0x113c45000 + 35400872 5 QtWebEngineCore 0x0000000115e085db 0x113c45000 + 35403227 6 QtWebEngineCore 0x0000000115e081b4 0x113c45000 + 35402164 7 QtWebEngineCore 0x0000000115e5f697 0x113c45000 + 35759767 8 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 11:: Chrome_IOThread 0 libsystem_kernel.dylib 0x00007fff6f60e78a kevent + 10 1 QtWebEngineCore 0x00000001160b1929 0x113c45000 + 38193449 2 QtWebEngineCore 0x00000001160aec3d 0x113c45000 + 38181949 3 QtWebEngineCore 0x0000000115e65c44 0x113c45000 + 35785796 4 QtWebEngineCore 0x0000000115dcd005 0x113c45000 + 35160069 5 QtWebEngineCore 0x0000000115732fa4 0x113c45000 + 28237732 6 QtWebEngineCore 0x0000000115e1f93c 0x113c45000 + 35498300 7 QtWebEngineCore 0x0000000115e5f697 0x113c45000 + 35759767 8 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QtWebEngineCore 0x0000000115e5f697 0x113c45000 + 35759767 8 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 15:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6f60821a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6f608768 mach_msg + 60 2 QtWebEngineCore 0x0000000115df02ad 0x113c45000 + 35304109 3 QtWebEngineCore 0x0000000115df01af 0x113c45000 + 35303855 4 QtWebEngineCore 0x0000000115da3fdd 0x113c45000 + 34992093 5 QtWebEngineCore 0x0000000115dcd005 0x113c45000 + 35160069 6 QtWebEngineCore 0x0000000115e1f93c 0x113c45000 + 35498300 7 QtWebEngineCore 0x0000000115e5f697 0x113c45000 + 35759767 8 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 16:: Chrome_InProcGpuThread 0 libsystem_kernel.dylib 0x00007fff6f60821a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6f608768 mach_msg + 60 2 QtWebEngineCore 0x0000000115df02ad 0x113c45000 + 35304109 3 QtWebEngineCore 0x0000000115da3fd2 0x113c45000 + 34992082 4 QtWebEngineCore 0x0000000115dcd005 0x113c45000 + 35160069 5 QtWebEngineCore 0x0000000115e1f93c 0x113c45000 + 35498300 6 QtWebEngineCore 0x0000000115e5f697 0x113c45000 + 35759767 7 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 17:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff6f60e78a kevent + 10 1 QtWebEngineCore 0x00000001160b1929 0x113c45000 + 38193449 2 QtWebEngineCore 0x00000001160aec3d 0x113c45000 + 38181949 3 QtWebEngineCore 0x0000000115e65c5c 0x113c45000 + 35785820 4 QtWebEngineCore 0x0000000115dcd005 0x113c45000 + 35160069 5 QtWebEngineCore 0x0000000115e1f93c 0x113c45000 + 35498300 6 QtWebEngineCore 0x0000000115e5f697 0x113c45000 + 35759767 7 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 18:: TaskSchedulerSingleThreadForegroundBlocking1 0 libsystem_kernel.dylib 0x00007fff6f60821a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6f608768 mach_msg + 60 2 QtWebEngineCore 0x0000000115df02ad 0x113c45000 + 35304109 3 QtWebEngineCore 0x0000000115df01af 0x113c45000 + 35303855 4 QtWebEngineCore 0x0000000115e07c9a 0x113c45000 + 35400858 5 QtWebEngineCore 0x0000000115e085db 0x113c45000 + 35403227 6 QtWebEngineCore 0x0000000115e082a4 0x113c45000 + 35402404 7 QtWebEngineCore 0x0000000115e5f697 0x113c45000 + 35759767 8 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 19:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6f60821a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6f608768 mach_msg + 60 2 QtWebEngineCore 0x0000000115df02ad 0x113c45000 + 35304109 3 QtWebEngineCore 0x0000000115df01af 0x113c45000 + 35303855 4 QtWebEngineCore 0x0000000115da3fdd 0x113c45000 + 34992093 5 QtWebEngineCore 0x0000000115dcd005 0x113c45000 + 35160069 6 QtWebEngineCore 0x0000000115e1f93c 0x113c45000 + 35498300 7 QtWebEngineCore 0x0000000115e5f697 0x113c45000 + 35759767 8 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 20:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6f60821a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6f608768 mach_msg + 60 2 QtWebEngineCore 0x0000000115df02ad 0x113c45000 + 35304109 3 QtWebEngineCore 0x0000000115df01af 0x113c45000 + 35303855 4 QtWebEngineCore 0x0000000115da3fdd 0x113c45000 + 34992093 5 QtWebEngineCore 0x0000000115dcd005 0x113c45000 + 35160069 6 QtWebEngineCore 0x0000000115e1f93c 0x113c45000 + 35498300 7 QtWebEngineCore 0x0000000115e5f697 0x113c45000 + 35759767 8 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 21: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libopenblasp-r0.3.7.dylib 0x000000015c14cc3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 22: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libopenblasp-r0.3.7.dylib 0x000000015c14cc3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 23: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libopenblasp-r0.3.7.dylib 0x000000015c14cc3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 24:: TaskSchedulerForegroundBlockingWorker 0 libsystem_kernel.dylib 0x00007fff6f60821a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6f608768 mach_msg + 60 2 QtWebEngineCore 0x0000000115df02ad 0x113c45000 + 35304109 3 QtWebEngineCore 0x0000000115df03a1 0x113c45000 + 35304353 4 QtWebEngineCore 0x0000000115e07ca8 0x113c45000 + 35400872 5 QtWebEngineCore 0x0000000115e085db 0x113c45000 + 35403227 6 QtWebEngineCore 0x0000000115e08244 0x113c45000 + 35402308 7 QtWebEngineCore 0x0000000115e5f697 0x113c45000 + 35759767 8 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 25: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMM.dylib 0x000000013cbc8daf OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 26: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMM.dylib 0x000000013cbc8daf OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 27: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMM.dylib 0x000000013cbc8daf OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 28: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMM.dylib 0x000000013cbc8daf OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 29: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMM.dylib 0x000000013cbc8daf OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 30: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMM.dylib 0x000000013cbc8daf OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 31: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMM.dylib 0x000000013cbc8daf OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 32: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMM.dylib 0x000000013cbc8daf OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 33: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMMOpenCL.dylib 0x000000013ce703cd threadBody(void*) + 109 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 34: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMM.dylib 0x000000013cbc8daf OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 35: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMM.dylib 0x000000013cbc8daf OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 36: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMM.dylib 0x000000013cbc8daf OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 37: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMM.dylib 0x000000013cbc8daf OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 38: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMM.dylib 0x000000013cbc8daf OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 39: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMM.dylib 0x000000013cbc8daf OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 40: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMM.dylib 0x000000013cbc8daf OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 41: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMM.dylib 0x000000013cbc8daf OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 42: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 libOpenMMOpenCL.dylib 0x000000013ce703cd threadBody(void*) + 109 3 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 43: 0 libsystem_pthread.dylib 0x00007fff6f6c63f0 start_wqthread + 0 Thread 44: 0 libsystem_pthread.dylib 0x00007fff6f6c63f0 start_wqthread + 0 Thread 45: 0 libsystem_pthread.dylib 0x00007fff6f6c63f0 start_wqthread + 0 Thread 46: 0 libsystem_pthread.dylib 0x00007fff6f6c63f0 start_wqthread + 0 Thread 47: 0 libsystem_pthread.dylib 0x00007fff6f6c63f0 start_wqthread + 0 Thread 48: 0 libsystem_kernel.dylib 0x00007fff6f60b866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6f6ca56e _pthread_cond_wait + 722 2 org.python.python 0x000000010502204f PyThread_acquire_lock_timed + 351 3 org.python.python 0x000000010506d95f acquire_timed + 111 4 org.python.python 0x000000010506d6dc lock_PyThread_acquire_lock + 44 5 org.python.python 0x0000000104f09582 _PyMethodDef_RawFastCallKeywords + 722 6 org.python.python 0x0000000104f0f581 _PyMethodDescr_FastCallKeywords + 81 7 org.python.python 0x0000000104fddb8e call_function + 814 8 org.python.python 0x0000000104fda78a _PyEval_EvalFrameDefault + 26538 9 org.python.python 0x0000000104fde9bc _PyEval_EvalCodeWithName + 3276 10 org.python.python 0x0000000104f08879 _PyFunction_FastCallKeywords + 217 11 org.python.python 0x0000000104fddb64 call_function + 772 12 org.python.python 0x0000000104fda78a _PyEval_EvalFrameDefault + 26538 13 org.python.python 0x0000000104fde9bc _PyEval_EvalCodeWithName + 3276 14 org.python.python 0x0000000104f08879 _PyFunction_FastCallKeywords + 217 15 org.python.python 0x0000000104fddb64 call_function + 772 16 org.python.python 0x0000000104fda78a _PyEval_EvalFrameDefault + 26538 17 org.python.python 0x0000000104f08d61 function_code_fastcall + 177 18 org.python.python 0x0000000104fddb64 call_function + 772 19 org.python.python 0x0000000104fda78a _PyEval_EvalFrameDefault + 26538 20 org.python.python 0x0000000104f08d61 function_code_fastcall + 177 21 org.python.python 0x0000000104fddb64 call_function + 772 22 org.python.python 0x0000000104fda78a _PyEval_EvalFrameDefault + 26538 23 org.python.python 0x0000000104f08d61 function_code_fastcall + 177 24 org.python.python 0x0000000104f09883 _PyObject_Call_Prepend + 131 25 org.python.python 0x0000000104f089d8 PyObject_Call + 136 26 org.python.python 0x000000010506e207 t_bootstrap + 71 27 org.python.python 0x0000000105021cb9 pythread_wrapper + 25 28 libsystem_pthread.dylib 0x00007fff6f6c72eb _pthread_body + 126 29 libsystem_pthread.dylib 0x00007fff6f6ca249 _pthread_start + 66 30 libsystem_pthread.dylib 0x00007fff6f6c640d thread_start + 13 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x00000001083165c0 rcx: 0x0000000105390a48 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x0000000105390a80 rsp: 0x0000000105390a48 r8: 0x0000000105390f48 r9: 0xf373b4cf588e403c r10: 0x000000010831666c r11: 0x0000000000000287 r12: 0x0000000000000307 r13: 0x0000600006fbe040 r14: 0x000000000000000b r15: 0x000000000000002d rip: 0x00007fff6f60e2c2 rfl: 0x0000000000000286 cr2: 0x0000000105023c50 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x104edb000 - 0x104edbff3 +edu.ucsf.cgl.ChimeraX (1.0.0 - 1.0.0.0) /Applications/ChimeraX-1.0.app/Contents/MacOS/ChimeraX 0x104ee5000 - 0x1050e0fff +org.python.python (3.7.7, [c] 2001-2019 Python Software Foundation. - 3.7.7) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/Python 0x105556000 - 0x105557ff7 +_heapq.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_heapq.cpython-37m-darwin.so 0x105620000 - 0x105623ff3 +zlib.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/zlib.cpython-37m-darwin.so 0x10562d000 - 0x105641ff7 +libz.1.2.11.dylib (0) /Applications/ChimeraX-1.0.app/Contents/lib/libz.1.2.11.dylib 0x105696000 - 0x105697ff7 +_bz2.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_bz2.cpython-37m-darwin.so 0x1056a0000 - 0x1056a3fff +_lzma.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_lzma.cpython-37m-darwin.so 0x1056ae000 - 0x1056aeffb +grp.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/grp.cpython-37m-darwin.so 0x1056f6000 - 0x1056fbffb +math.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/math.cpython-37m-darwin.so 0x105707000 - 0x105709ff3 +_hashlib.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_hashlib.cpython-37m-darwin.so 0x105712000 - 0x10576fff7 +libssl.1.1.dylib (0) /Applications/ChimeraX-1.0.app/Contents/lib/libssl.1.1.dylib 0x10579e000 - 0x105965af3 +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.0.app/Contents/lib/libcrypto.1.1.dylib 0x1059fe000 - 0x105a03ff3 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0x7fff6f4eaffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib 0x7fff6f4eb000 - 0x7fff6f4f7ff3 libkxld.dylib (4903.278.28) /usr/lib/system/libkxld.dylib 0x7fff6f4f8000 - 0x7fff6f4f8ff7 liblaunch.dylib (1336.261.4) /usr/lib/system/liblaunch.dylib 0x7fff6f4f9000 - 0x7fff6f4fefff libmacho.dylib (927.0.3) /usr/lib/system/libmacho.dylib 0x7fff6f4ff000 - 0x7fff6f501ff7 libquarantine.dylib (86.270.1) /usr/lib/system/libquarantine.dylib 0x7fff6f502000 - 0x7fff6f503ff7 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib 0x7fff6f504000 - 0x7fff6f51bff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib 0x7fff6f51c000 - 0x7fff6f51cff7 libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib 0x7fff6f51d000 - 0x7fff6f5a4fff libsystem_c.dylib (1272.250.1) /usr/lib/system/libsystem_c.dylib 0x7fff6f5a5000 - 0x7fff6f5a8ffb libsystem_configuration.dylib (963.270.3) /usr/lib/system/libsystem_configuration.dylib 0x7fff6f5a9000 - 0x7fff6f5acff7 libsystem_coreservices.dylib (66) /usr/lib/system/libsystem_coreservices.dylib 0x7fff6f5ad000 - 0x7fff6f5b3fff libsystem_darwin.dylib (1272.250.1) /usr/lib/system/libsystem_darwin.dylib 0x7fff6f5b4000 - 0x7fff6f5baffb libsystem_dnssd.dylib (878.270.3) /usr/lib/system/libsystem_dnssd.dylib 0x7fff6f5bb000 - 0x7fff6f606ffb libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib 0x7fff6f607000 - 0x7fff6f62fff7 libsystem_kernel.dylib (4903.278.28) /usr/lib/system/libsystem_kernel.dylib 0x7fff6f630000 - 0x7fff6f67bff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib 0x7fff6f67c000 - 0x7fff6f6a6fff libsystem_malloc.dylib (166.270.1) /usr/lib/system/libsystem_malloc.dylib 0x7fff6f6a7000 - 0x7fff6f6b1ff7 libsystem_networkextension.dylib (767.250.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff6f6b2000 - 0x7fff6f6b9fff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib 0x7fff6f6ba000 - 0x7fff6f6c3fef libsystem_platform.dylib (177.270.1) /usr/lib/system/libsystem_platform.dylib 0x7fff6f6c4000 - 0x7fff6f6ceff7 libsystem_pthread.dylib (330.250.2) /usr/lib/system/libsystem_pthread.dylib 0x7fff6f6cf000 - 0x7fff6f6d2ff7 libsystem_sandbox.dylib (851.270.1) /usr/lib/system/libsystem_sandbox.dylib 0x7fff6f6d3000 - 0x7fff6f6d5ff3 libsystem_secinit.dylib (30.260.2) /usr/lib/system/libsystem_secinit.dylib 0x7fff6f6d6000 - 0x7fff6f6ddff3 libsystem_symptoms.dylib (820.267.1) /usr/lib/system/libsystem_symptoms.dylib 0x7fff6f6de000 - 0x7fff6f6f3ff7 libsystem_trace.dylib (906.260.2) /usr/lib/system/libsystem_trace.dylib 0x7fff6f6f5000 - 0x7fff6f6faffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff6f6fb000 - 0x7fff6f72afff libxpc.dylib (1336.261.4) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 223 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 2962639 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=880.8M resident=0K(0%) swapped_out_or_unallocated=880.8M(100%) Writable regions: Total=2.4G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.4G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 1408K 11 Activity Tracing 256K 1 CG backing stores 2000K 7 CG image 560K 61 CoreAnimation 2352K 127 CoreGraphics 8K 1 CoreImage 184K 36 CoreUI image data 5164K 69 CoreUI image file 596K 11 Foundation 21.4M 9 Kernel Alloc Once 272K 3 MALLOC 1.0G 604 MALLOC guard page 32K 8 MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated) MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated) Memory Tag 242 12K 1 OpenCL 526.4M 138 OpenCL (reserved) 92K 12 reserved VM address space (unallocated) OpenGL GLSL 512K 6 PROTECTED_MEMORY 4K 1 STACK GUARD 192K 48 Stack 164.4M 49 Stack Guard 56.0M 1 VM_ALLOCATE 426.8M 508 VM_ALLOCATE (reserved) 128.0M 2 reserved VM address space (unallocated) __DATA 53.1M 615 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 261.5M 215 __TEXT 619.2M 569 __UNICODE 564K 1 mapped file 197.1M 81 shared memory 3768K 23 =========== ======= ======= TOTAL 3.5G 3222 TOTAL, minus reserved VM space 3.3G 3222 Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX Some installed bundles are out of date. Please update the following bundles: * UI to version 1.2.1 (currently 1.0) * UI to version 1.2 (currently 1.0) OpenGL version: 4.1 INTEL-12.10.17 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655 OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,2 Processor Name: Intel Core i5 Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 6 MB Hyper-Threading Technology: Enabled Memory: 16 GB Boot ROM Version: 1037.100.359.0.0 (iBridge: 17.16.14263.0.0,0) Software: System Software Overview: System Version: macOS 10.14.6 (18G4032) Kernel Version: Darwin 18.7.0 Time since boot: 46 days 14:15 Graphics/Displays: Intel Iris Plus Graphics 655: Chipset Model: Intel Iris Plus Graphics 655 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3ea5 Revision ID: 0x0001 Metal: Supported, feature set macOS GPUFamily2 v1 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No DELL U2419H: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60 Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: HYH6RS2 Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No Connection Type: DVI or HDMI Adapter Firmware Version: 7.61 DELL U2414H: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60 Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: H8H7G53J1W8L Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No Connection Type: DVI or HDMI Adapter Firmware Version: 3.0c PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 }}} " defect closed normal Window Toolkit can't reproduce Eric Pettersen all ChimeraX