id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
3652	Main graphics goes gray	alexyc991@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        Windows-10-10.0.18362
ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC)
Description
Whenever I move my cursor away from the structure display (left hand side), for example, to the log or the model panel on the right hand side, the display will be temporarily gone (turn gray color) until I click on it again.

Log:
UCSF ChimeraX version: 1.0 (2020-06-04)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> C:\\\Users\\\runni\\\Desktop\\\Research\\\FYP\\\DOCKING_EM\\\STyphimuriumDNAK\\\DOCKING\\\DNAK_SCR\\\em_noPBC_clear.pdb

Summary of feedback from opening
C:\\\Users\\\runni\\\Desktop\\\Research\\\FYP\\\DOCKING_EM\\\STyphimuriumDNAK\\\DOCKING\\\DNAK_SCR\\\em_noPBC_clear.pdb  
---  
warning | Ignored bad PDB record found on line 10642  
END  
  
Chain information for em_noPBC_clear.pdb #1  
---  
Chain | Description  
| No description available  
  

> open
> C:/Users/runni/Desktop/Research/FYP/DOCKING_EM/STyphimuriumDNAK/DOCKING/DNAK_SCR/DOCKED.pdb

Summary of feedback from opening
C:/Users/runni/Desktop/Research/FYP/DOCKING_EM/STyphimuriumDNAK/DOCKING/DNAK_SCR/DOCKED.pdb  
---  
warnings | Ignored bad PDB record found on line 25  
REMARK 2 active torsions:  
  
Ignored bad PDB record found on line 26  
REMARK status: ('A' for Active; 'I' for Inactive)  
  
Ignored bad PDB record found on line 27  
REMARK 1 A between atoms: C9_10 and O2_11  
  
Ignored bad PDB record found on line 28  
REMARK 2 A between atoms: C13_18 and O6_22  
  
Ignored bad PDB record found on line 31  
ROOT  
  
1195 messages similar to the above omitted  
  

> open
> C:/Users/runni/Desktop/Research/FYP/DOCKING_EM/STyphimuriumDNAK/DOCKING/DNAK_EBA/DOCKED.pdb

Summary of feedback from opening
C:/Users/runni/Desktop/Research/FYP/DOCKING_EM/STyphimuriumDNAK/DOCKING/DNAK_EBA/DOCKED.pdb  
---  
warnings | Ignored bad PDB record found on line 25  
REMARK 4 active torsions:  
  
Ignored bad PDB record found on line 26  
REMARK status: ('A' for Active; 'I' for Inactive)  
  
Ignored bad PDB record found on line 27  
REMARK 1 A between atoms: C5_5 and O6_24  
  
Ignored bad PDB record found on line 28  
REMARK 2 A between atoms: C14_16 and O5_22  
  
Ignored bad PDB record found on line 29  
REMARK 3 A between atoms: C15_17 and O4_20  
  
1795 messages similar to the above omitted  
  

> open
> C:/Users/runni/Desktop/Research/FYP/DOCKING_EM/STyphimuriumDNAK/DOCKING/DNAK_XR7/DOCKED.pdb

Summary of feedback from opening
C:/Users/runni/Desktop/Research/FYP/DOCKING_EM/STyphimuriumDNAK/DOCKING/DNAK_XR7/DOCKED.pdb  
---  
warnings | Ignored bad PDB record found on line 25  
REMARK 9 active torsions:  
  
Ignored bad PDB record found on line 26  
REMARK status: ('A' for Active; 'I' for Inactive)  
  
Ignored bad PDB record found on line 27  
REMARK 1 A between atoms: O1_2 and C2_3  
  
Ignored bad PDB record found on line 28  
REMARK 2 A between atoms: C3_4 and O2_5  
  
Ignored bad PDB record found on line 29  
REMARK 3 A between atoms: C7_9 and O3_10  
  
3295 messages similar to the above omitted  
  

> hide #!2 models

> show #!2 models

> hide #2

> hide #2

> hide #3

> hide #4

> select ::name=""EBA""

2900 atoms, 3200 bonds, 100 models selected  

> select ::name=""SCR""

2600 atoms, 2900 bonds, 100 models selected  

> open
> C:\Users\runni\Desktop\Research\FYP\DOCKING_EM\STyphimuriumDNAK\DOCKING\DNAK_SCR\em_noPBC_clear.pdb
> format pdb

Summary of feedback from opening
C:\Users\runni\Desktop\Research\FYP\DOCKING_EM\STyphimuriumDNAK\DOCKING\DNAK_SCR\em_noPBC_clear.pdb  
---  
warning | Ignored bad PDB record found on line 10642  
END  
  
Chain information for em_noPBC_clear.pdb #5  
---  
Chain | Description  
| No description available  
  

> close #5




OpenGL version: 3.3.0 NVIDIA 451.67
OpenGL renderer: GeForce GTX 1650/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Acer
Model: Nitro AN515-43
OS: Microsoft Windows 10 Home Single Language (Build 18362)
Memory: 3,693,752,320
MaxProcessMemory: 137,438,953,344
CPU: 8 AMD Ryzen 7 3750H with Radeon Vega Mobile Gfx  ""
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8
File attachment: bug.PNG

}}}

[attachment:""bug.PNG""]
"	defect	closed	normal		Graphics		nonchimerax						all	ChimeraX