id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3514 Type registration conflict jbard@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.18362 ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description I am trying to assign custom attributes to a structure as outlined here: http://rbvi.ucsf.edu/chimerax/docs/user/commands/color.html#byattribute. I have opened 6fyy and loaded the attached file as a preset. When I attempt to apply the preset, i get this error. Thank you! Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 6fyy Summary of feedback from opening 6fyy fetched from pdb --- warning | Unable to infer polymer connectivity due to unspecified label_seq_id for residue ""MET"" near line 121982 6fyy title: Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2) [more info...] Chain information for 6fyy #1 --- Chain | Description 1 | tRNAi 2 | 18S ribosomal RNA 3 | mRNA (31-MER) A | 40S ribosomal protein S0 B | 40S ribosomal protein S1 C | KLLA0F09812p D | KLLA0D08305p E | 40S ribosomal protein S4 F | KLLA0D10659p G | 40S ribosomal protein S6 H | 40S ribosomal protein S7 I | 40S ribosomal protein S8 J | KLLA0E23673p K | KLLA0B08173p L | KLLA0A10483p M | 40S ribosomal protein S12 N | KLLA0F18040p O | 40S ribosomal protein S14 P | KLLA0F07843p Q | 40S ribosomal protein S16 R | KLLA0B01474p S | KLLA0B01562p T | KLLA0A07194p U | KLLA0F25542p V | 40S ribosomal protein S21 W | 40S ribosomal protein S22 X | KLLA0B11231p Y | 40S ribosomal protein S24 Z | KLLA0B06182p a | 40S ribosomal protein S26 b | 40S ribosomal protein S27 c | 40S ribosomal protein S28 d | 40S ribosomal protein S29 e | 40S ribosomal protein S30 f | Ubiquitin-40S ribosomal protein S27a g | KLLA0E12277p h | 60S ribosomal protein L41-A i | Eukaryotic translation initiation factor 1A j | Eukaryotic translation initiation factor 2 subunit α k | Eukaryotic translation initiation factor 2 subunit γ l | Eukaryotic translation initiation factor 2 subunit β m | Eukaryotic translation initiation factor 5 o | Eukaryotic translation initiation factor 3 subunit A p | Eukaryotic translation initiation factor 3 subunit B q | eIF3c,Eukaryotic translation initiation factor 3 subunit C r | Eukaryotic translation initiation factor 3 subunit G s | Eukaryotic translation initiation factor 3 subunit I Non-standard residues in 6fyy #1 --- C4J — (5S)-5-{3-[(3S)-3-amino-3-carboxypropyl]-1-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl}-2,5-anhydro-1-O-phosphono- L-arabinitol GCP — phosphomethylphosphonic acid guanylate ester MG — magnesium ion ZN — zinc ion > setattr #1/o:8 res conserved -0.5 create true Assigning conserved attribute to 1 item > preset custom eif3a Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved 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1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 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conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.0\bin\lib\site-packages\chimerax\ui\gui.py"", line 1027, in run(ses, ""preset %s%s"" % (cat, StringArg.unparse(name.lower())))) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\run.py"", line 31, in run results = command.run(text, log=log) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\preset_mgr\cmd.py"", line 49, in preset_cmd session.presets.preset_function(cat, matches[0])() File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\preset_mgr\manager.py"", line 89, in name: lambda p=preset: self.execute(p) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\preset_mgr\manager.py"", line 76, in execute run(self.session, line, log=False) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\run.py"", line 31, in run results = command.run(text, log=log) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\std_commands\setattr.py"", line 94, in set_attr register_attr(session, items.object_class, attr_name, type(value)) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\std_commands\setattr.py"", line 130, in register_attr class_obj.register_attr(session, attr_name, ""setattr command"", attr_type=attr_type) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 50, in register_attr cls._attr_registration.register(session, attr_name, registerer, default_value, (attr_type, can_return_none)) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 78, in register "" registration by %s"" % (attr_name, self.class_.__name__, registrant, prev_registrant)) ValueError: Registration of attr 'conserved' with Residue by setattr command conflicts with previous registration by setattr command ValueError: Registration of attr 'conserved' with Residue by setattr command conflicts with previous registration by setattr command File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 78, in register "" registration by %s"" % (attr_name, self.class_.__name__, registrant, prev_registrant)) See log for complete Python traceback. > select 104236 atoms, 109977 bonds, 1818 pseudobonds, 4 models selected > color (#!1 & sel) light gray > select clear > color byattribute conserved #1/o 4070 atoms, 529 residues, atom conserved range -1 to 1 > select up Nothing selected > info residues #1/o:177 attribute conserved residue id /o:177 conserved 0.3333333333333333 index 176 > preset custom eif3a Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item 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items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved 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items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 0 items Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Assigning conserved attribute to 1 item Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.0\bin\lib\site-packages\chimerax\ui\gui.py"", line 1027, in run(ses, ""preset %s%s"" % (cat, StringArg.unparse(name.lower())))) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\run.py"", line 31, in run results = command.run(text, log=log) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\preset_mgr\cmd.py"", line 49, in preset_cmd session.presets.preset_function(cat, matches[0])() File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\preset_mgr\manager.py"", line 89, in name: lambda p=preset: self.execute(p) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\preset_mgr\manager.py"", line 76, in execute run(self.session, line, log=False) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\run.py"", line 31, in run results = command.run(text, log=log) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\std_commands\setattr.py"", line 94, in set_attr register_attr(session, items.object_class, attr_name, type(value)) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\std_commands\setattr.py"", line 130, in register_attr class_obj.register_attr(session, attr_name, ""setattr command"", attr_type=attr_type) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 50, in register_attr cls._attr_registration.register(session, attr_name, registerer, default_value, (attr_type, can_return_none)) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 78, in register "" registration by %s"" % (attr_name, self.class_.__name__, registrant, prev_registrant)) ValueError: Registration of attr 'conserved' with Residue by setattr command conflicts with previous registration by setattr command ValueError: Registration of attr 'conserved' with Residue by setattr command conflicts with previous registration by setattr command File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 78, in register "" registration by %s"" % (attr_name, self.class_.__name__, registrant, prev_registrant)) See log for complete Python traceback. > select #1/o:964 Nothing selected > select #1/o:963 Nothing selected > ui tool show ""Show Sequence Viewer"" > sequence chain /o Alignment identifier is 1.o > select #1/o:939 5 atoms, 4 bonds, 1 model selected > info residues #1/o:939 attribute conserved > setattr #1/o:939 res conserved 0 create true Assigning conserved attribute to 1 item Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 258, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\std_commands\setattr.py"", line 94, in set_attr register_attr(session, items.object_class, attr_name, type(value)) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\std_commands\setattr.py"", line 130, in register_attr class_obj.register_attr(session, attr_name, ""setattr command"", attr_type=attr_type) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 50, in register_attr cls._attr_registration.register(session, attr_name, registerer, default_value, (attr_type, can_return_none)) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 78, in register "" registration by %s"" % (attr_name, self.class_.__name__, registrant, prev_registrant)) ValueError: Registration of attr 'conserved' with Residue by setattr command conflicts with previous registration by setattr command ValueError: Registration of attr 'conserved' with Residue by setattr command conflicts with previous registration by setattr command File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 78, in register "" registration by %s"" % (attr_name, self.class_.__name__, registrant, prev_registrant)) See log for complete Python traceback. > setattr /o:939 res conserved 0 create true Assigning conserved attribute to 1 item Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 258, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\std_commands\setattr.py"", line 94, in set_attr register_attr(session, items.object_class, attr_name, type(value)) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\std_commands\setattr.py"", line 130, in register_attr class_obj.register_attr(session, attr_name, ""setattr command"", attr_type=attr_type) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 50, in register_attr cls._attr_registration.register(session, attr_name, registerer, default_value, (attr_type, can_return_none)) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 78, in register "" registration by %s"" % (attr_name, self.class_.__name__, registrant, prev_registrant)) ValueError: Registration of attr 'conserved' with Residue by setattr command conflicts with previous registration by setattr command ValueError: Registration of attr 'conserved' with Residue by setattr command conflicts with previous registration by setattr command File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 78, in register "" registration by %s"" % (attr_name, self.class_.__name__, registrant, prev_registrant)) See log for complete Python traceback. > setattr /o:939 res conserved 0 create false Assigning conserved attribute to 1 item Not creating attribute 'conserved'; use 'create true' to override > setattr /o:939 res conserved 0 create true Assigning conserved attribute to 1 item Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 258, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\std_commands\setattr.py"", line 94, in set_attr register_attr(session, items.object_class, attr_name, type(value)) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\std_commands\setattr.py"", line 130, in register_attr class_obj.register_attr(session, attr_name, ""setattr command"", attr_type=attr_type) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 50, in register_attr cls._attr_registration.register(session, attr_name, registerer, default_value, (attr_type, can_return_none)) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 78, in register "" registration by %s"" % (attr_name, self.class_.__name__, registrant, prev_registrant)) ValueError: Registration of attr 'conserved' with Residue by setattr command conflicts with previous registration by setattr command ValueError: Registration of attr 'conserved' with Residue by setattr command conflicts with previous registration by setattr command File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 78, in register "" registration by %s"" % (attr_name, self.class_.__name__, registrant, prev_registrant)) See log for complete Python traceback. > setattr /o:939 res conserved 0 create true Assigning conserved attribute to 1 item Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 258, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\std_commands\setattr.py"", line 94, in set_attr register_attr(session, items.object_class, attr_name, type(value)) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\std_commands\setattr.py"", line 130, in register_attr class_obj.register_attr(session, attr_name, ""setattr command"", attr_type=attr_type) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 50, in register_attr cls._attr_registration.register(session, attr_name, registerer, default_value, (attr_type, can_return_none)) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 78, in register "" registration by %s"" % (attr_name, self.class_.__name__, registrant, prev_registrant)) ValueError: Registration of attr 'conserved' with Residue by setattr command conflicts with previous registration by setattr command ValueError: Registration of attr 'conserved' with Residue by setattr command conflicts with previous registration by setattr command File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\attr_registration.py"", line 78, in register "" registration by %s"" % (attr_name, self.class_.__name__, registrant, prev_registrant)) See log for complete Python traceback. OpenGL version: 3.3.0 - Build 24.20.100.6286 OpenGL renderer: Intel(R) UHD Graphics 620 OpenGL vendor: Intel Manufacturer: Dell Inc. Model: Latitude 7490 OS: Microsoft Windows 10 Enterprise (Build 18363) Memory: 17,053,335,552 MaxProcessMemory: 137,438,953,344 CPU: 8 Intel(R) Core(TM) i7-8650U CPU @ 1.90GHz"" PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 File attachment: eIF3a.cxc }}} [attachment:""eIF3a.cxc""] " defect closed normal Structure Analysis not a bug all ChimeraX