id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3501 Problem saving map: No such file or directory prive@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Darwin-19.5.0-x86_64-i386-64bit ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description cannot save maps (maybe other file types too). OSX 10.15.5 ChimeraX 1.0 (2020-06-04) Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/gil/OneDrive - > UHN/Work/RIS_AUFS/projects/BTB/KCTD/KCTD_G_protein_interactions/KCTD9_Cul3_em_rubinstein/cryoSPARC/12July2020_analysis/cryosparc_P2_J1010_003_volume_map.mrc"" > ""/Users/gil/OneDrive - > UHN/Work/RIS_AUFS/projects/BTB/KCTD/KCTD_G_protein_interactions/KCTD9_Cul3_em_rubinstein/cryoSPARC/12July2020_analysis/cryosparc_P2_J1011_004_volume_map.mrc"" > ""/Users/gil/OneDrive - > UHN/Work/RIS_AUFS/projects/BTB/KCTD/KCTD_G_protein_interactions/KCTD9_Cul3_em_rubinstein/cryoSPARC/12July2020_analysis/cryosparc_P2_J1013_001_volume_map.mrc"" > ""/Users/gil/OneDrive - > UHN/Work/RIS_AUFS/projects/BTB/KCTD/KCTD_G_protein_interactions/KCTD9_Cul3_em_rubinstein/cryoSPARC/12July2020_analysis/cryosparc_P2_J1014_002_volume_map.mrc"" > ""/Users/gil/OneDrive - > UHN/Work/RIS_AUFS/projects/BTB/KCTD/KCTD_G_protein_interactions/KCTD9_Cul3_em_rubinstein/cryoSPARC/12July2020_analysis/cryosparc_P2_J1016_002_volume_map.mrc"" > ""/Users/gil/OneDrive - > UHN/Work/RIS_AUFS/projects/BTB/KCTD/KCTD_G_protein_interactions/KCTD9_Cul3_em_rubinstein/cryoSPARC/12July2020_analysis/cryosparc_P2_J1017_003_volume_map.mrc"" Opened cryosparc_P2_J1010_003_volume_map.mrc, grid size 256,256,256, pixel 1.45, shown at level 0.118, step 1, values float32 Opened cryosparc_P2_J1011_004_volume_map.mrc, grid size 256,256,256, pixel 1.45, shown at level 0.116, step 1, values float32 Opened cryosparc_P2_J1013_001_volume_map.mrc, grid size 256,256,256, pixel 1.45, shown at level 0.094, step 1, values float32 Opened cryosparc_P2_J1014_002_volume_map.mrc, grid size 256,256,256, pixel 1.45, shown at level 0.0924, step 1, values float32 Opened cryosparc_P2_J1016_002_volume_map.mrc, grid size 256,256,256, pixel 1.45, shown at level 0.109, step 1, values float32 Opened cryosparc_P2_J1017_003_volume_map.mrc, grid size 256,256,256, pixel 1.45, shown at level 0.103, step 1, values float32 > hide #!3 models > hide #!4 models > hide #!5 models > hide #!6 models > hide #!2 models > volume #1 level 0.06359 > volume #1 level 0.06586 > show #!3 models > volume #3 level 0.03478 > show #!5 models > volume #5 level 0.03602 > hide #!5 models > hide #!3 models > hide #1.1 models > volume #1 level 0.1101 > show #!2 models > hide #!1 models > volume #2 level 0.07445 > show #!4 models > hide #!2 models > hide #!4 models > show #!6 models > show #!4 models > show #!2 models > hide #!4 models > hide #!6 models > open /Users/gil/Downloads/k5/cryosparc_P2_J1009_006_volume_map.mrc Opened cryosparc_P2_J1009_006_volume_map.mrc, grid size 256,256,256, pixel 1.45, shown at level 0.0648, step 1, values float32 > open /Users/gil/Downloads/k5/cryosparc_P2_J998_007_volume_map.mrc Opened cryosparc_P2_J998_007_volume_map.mrc, grid size 256,256,256, pixel 1.45, shown at level 0.102, step 1, values float32 > hide #!7 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > close #7 > volume #8 level 0.1043 > volume #8 level 0.07793 > open ""/Users/gil/OneDrive - > UHN/Work/RIS_AUFS/projects/BTB/KCTD/KCTD_G_protein_interactions/KCTD9_Cul3_em_rubinstein/model-2/K5C3_C5.pdb"" Chain information for K5C3_C5.pdb #7 --- Chain | Description A B C D E | No description available F G H I J | No description available > hide surfaces > hide surfaces > hide surfaces > hide surfaces > show cartoons > show cartoons > show cartoons > hide #!8 models Drag select of 10563 atoms, 2 pseudobonds, 2124 residues, 99 bonds Drag select of 13215 atoms, 10 pseudobonds, 2680 residues, 135 bonds > hide sel surfaces > hide sel surfaces > ~select #7.1 21330 atoms, 135 bonds, 1 model selected > select #7.1 10 pseudobonds, 1 model selected > select #7 21330 atoms, 21665 bonds, 10 pseudobonds, 2 models selected > ~select #7 Nothing selected > select #7 21330 atoms, 21665 bonds, 10 pseudobonds, 2 models selected > ~select #7.1 21330 atoms, 21665 bonds, 1 model selected > hide #7.1 models > hide sel surfaces > show sel cartoons > show sel cartoons > view #!7 clip false > hide sel surfaces > hide sel surfaces > color sel byhetero > hide #* target a > show sel target ab > cartoon sel > hide sel target a > select clear > show #!8 models > hide #!8 models > ui mousemode right select > select clear > select clear Drag select of 2671 residues > select clear Drag select of 2680 residues > show #!8 models > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > ui mousemode right translate > ui tool show ""Fit in Map"" Fit molecule K5C3_C5.pdb (#7) to map cryosparc_P2_J998_007_volume_map.mrc (#8) using 21330 atoms average map value = 0.1006, steps = 372 shifted from previous position = 13.8 rotated from previous position = 39.5 degrees atoms outside contour = 10767, contour level = 0.077928 Position of K5C3_C5.pdb (#7) relative to cryosparc_P2_J998_007_volume_map.mrc (#8) coordinates: Matrix rotation and translation 0.00734655 0.95187359 -0.30640283 114.32815661 -0.59453917 0.25052914 0.76404079 126.54434082 0.80403309 0.17655542 0.56776666 7.52577904 Axis -0.29486533 -0.55733993 -0.77616148 Axis point 94.21621447 12.24418689 -0.00000000 Rotation angle (degrees) 95.00132759 Shift along axis -110.08084359 > volume #8 style mesh > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > ui mousemode right ""rotate selected models"" > ui mousemode right rotate > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" Fit molecule K5C3_C5.pdb (#7) to map cryosparc_P2_J998_007_volume_map.mrc (#8) using 21330 atoms average map value = 0.098, steps = 168 shifted from previous position = 14.2 rotated from previous position = 16 degrees atoms outside contour = 11195, contour level = 0.077928 Position of K5C3_C5.pdb (#7) relative to cryosparc_P2_J998_007_volume_map.mrc (#8) coordinates: Matrix rotation and translation 0.70654230 0.70764525 0.00601464 21.61835389 -0.70603111 0.70545799 -0.06204098 194.00569774 -0.04814608 0.03958806 0.99805548 65.11413958 Axis 0.07165254 0.03818547 -0.99669844 Axis point 249.71541132 67.34189682 0.00000000 Rotation angle (degrees) 45.16820303 Shift along axis -55.94195200 > select clear > volume #8 level 0.1238 > volume #8 level 0.2635 > volume #8 level 0.3368 > hide #!7 models > show #!7 models > select #8 2 models selected > ~select #8 Nothing selected > hide #!8 models > show #!8 models > volume #8 level 0.1203 > hide #!8 models > show #!8 models > volume #8 level -0.1123 > volume #8 level 0.02752 > show #!1 models > volume #1 style mesh > volume #1 level -0.007925 > volume #8 level -0.1237 > hide #!8 models > show #!8 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > volume #1 level 0.05224 > volume #1 level 0.0863 > volume #8 level 0.05731 > hide #!8 models > show #!8 models > hide #!8 models > show #!8 models > hide #!8 models > show #!8 models > hide #!7 models > show #!7 models > hide #!8 models > show #!8 models > show #!1 models > hide #!8 models > select #1 2 models selected > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > ui tool show ""Fit in Map"" > help flip map No help found for 'flip map' > help invert No help found for 'invert' > help hand No help found for 'hand' > help vop > vop volume gaussian #1 invert > volume volumes gaussian #1 invert Invalid ""volumes"" argument: invalid density maps specifier > vop volume gaussian #1 invert true > volume volumes gaussian #1 invert true Invalid ""volumes"" argument: invalid density maps specifier > volume gaussian #1 invert true > show #!1 models > hide #!1 models > show #!1 models > ui mousemode right ""translate selected models"" > hide #!1 models > show #!1 models > show #!9 models > hide #!1 models > ~select #1 Nothing selected > hide #1.1 models > select #9 2 models selected > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > hide #!9 models > show #!9 models > ui tool show Log > volume flip #1 > close #9 > hide #!7 models > show #!7 models > hide #!10 models > show #!10 models > select #10 2 models selected > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected atoms"" > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > ~select #10 Nothing selected > show #!8 models > select #10 2 models selected > hide #!7 models > ~select #10 Nothing selected > select #10 2 models selected > hide #!10 models > show #!10 models > hide #!10 models > show #!10 models > hide #!8 models > hide #!10 models > show #!10 models > show #!8 models Fit map cryosparc_P2_J1010_003_volume_map.mrc z flip in map cryosparc_P2_J998_007_volume_map.mrc using 227211 points correlation = 0.8579, correlation about mean = 0.5543, overlap = 5818 steps = 240, shift = 17.9, angle = 30.3 degrees Position of cryosparc_P2_J1010_003_volume_map.mrc z flip (#10) relative to cryosparc_P2_J998_007_volume_map.mrc (#8) coordinates: Matrix rotation and translation -0.10219469 -0.46250207 0.88070885 118.51805703 -0.20092337 0.87669365 0.43707898 -19.49107601 -0.97426179 -0.13228784 -0.18252091 419.21447401 Axis -0.29079933 0.94741069 0.13359913 Axis point 235.98110142 0.00000000 159.74025888 Rotation angle (degrees) 101.77160864 Shift along axis 3.07566310 > ~select #10 Nothing selected > hide #!8 models > show #!8 models > hide #!8 models > hide #!10 models > show #!8 models > volume #8 level 0.1078 > show #!10 models > hide #!8 models > show #!8 models > show #!7 models > hide #!7 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > volume flip #2 > hide #!9 models > show #!9 models > show #!10 models > hide #!10 models > show #!10 models > hide #!10 models > hide #!9 models > show #!9 models > show #!10 models > hide #!10 models > show #!8 models > hide #!9 models > show #!9 models > hide #!9 models > show #!9 models Fit map cryosparc_P2_J1011_004_volume_map.mrc z flip in map cryosparc_P2_J998_007_volume_map.mrc using 263659 points correlation = 0.8779, correlation about mean = 0.726, overlap = 5947 steps = 104, shift = 1.28, angle = 8.97 degrees Position of cryosparc_P2_J1011_004_volume_map.mrc z flip (#9) relative to cryosparc_P2_J998_007_volume_map.mrc (#8) coordinates: Matrix rotation and translation 0.98776623 -0.15594179 0.00020212 31.17912176 0.15594186 0.98776618 -0.00034318 -26.62993981 -0.00014613 0.00037050 0.99999992 1.23354781 Axis 0.00228831 0.00111659 0.99999676 Axis point 185.32107310 185.38345009 0.00000000 Rotation angle (degrees) 8.97145237 Shift along axis 1.27515657 > hide #!8 models > hide #!9 models > show #!3 models > select #3 2 models selected > hide #!3 models > show #!3 models > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > ~select #3 Nothing selected Fit map cryosparc_P2_J1013_001_volume_map.mrc in map cryosparc_P2_J998_007_volume_map.mrc using 349645 points correlation = 0.8717, correlation about mean = 0.7139, overlap = 6181 steps = 200, shift = 24.2, angle = 15 degrees Position of cryosparc_P2_J1013_001_volume_map.mrc (#3) relative to cryosparc_P2_J998_007_volume_map.mrc (#8) coordinates: Matrix rotation and translation -0.08359893 0.40876203 0.90880406 -37.45085791 -0.03355958 0.91032432 -0.41253289 103.15027229 -0.99593422 -0.06498639 -0.06238426 386.84391479 Axis 0.17499227 0.95905003 -0.22271225 Axis point 151.67024627 0.00000000 223.24794460 Rotation angle (degrees) 96.76684959 Shift along axis 6.21778037 > hide #!3 models > show #!3 models > volume #3 level 0.1006 > show #!4 models > hide #!3 models > hide #!4 models > show #!4 models Fit map cryosparc_P2_J1014_002_volume_map.mrc in map cryosparc_P2_J998_007_volume_map.mrc using 167718 points correlation = 0.8435, correlation about mean = 0.3473, overlap = 4171 steps = 128, shift = 24.3, angle = 1.38 degrees Position of cryosparc_P2_J1014_002_volume_map.mrc (#4) relative to cryosparc_P2_J998_007_volume_map.mrc (#8) coordinates: Matrix rotation and translation 0.99970875 -0.02413281 -0.00016181 4.55880920 0.02413282 0.99970876 0.00003044 -4.44071073 0.00016103 -0.00003433 0.99999999 -24.36137628 Axis -0.00134188 -0.00668875 0.99997673 Axis point 192.99199816 185.22260641 0.00000000 Rotation angle (degrees) 1.38287481 Shift along axis -24.33722396 > hide #!4 models > show #!4 models > select #4 2 models selected > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" Fit map cryosparc_P2_J1014_002_volume_map.mrc in map cryosparc_P2_J998_007_volume_map.mrc using 167718 points correlation = 0.9357, correlation about mean = 0.5964, overlap = 5939 steps = 92, shift = 4.29, angle = 6.92 degrees Position of cryosparc_P2_J1014_002_volume_map.mrc (#4) relative to cryosparc_P2_J998_007_volume_map.mrc (#8) coordinates: Matrix rotation and translation -0.68154722 -0.73177414 0.00003280 447.90793721 -0.73177414 0.68154722 -0.00006637 194.94689857 0.00002622 -0.00006924 -1.00000000 363.50471130 Axis -0.39901272 0.91694539 -0.00008969 Axis point 266.37031383 0.00000000 181.76145151 Rotation angle (degrees) 179.99979439 Shift along axis 0.00209355 > hide #!4 models > ~select #4 Nothing selected > hide #!8 models > show #!8 models > show #!5 models > select #5 2 models selected > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > volume #5 level 0.1128 Fit map cryosparc_P2_J1016_002_volume_map.mrc in map cryosparc_P2_J998_007_volume_map.mrc using 160789 points correlation = 0.9385, correlation about mean = 0.6787, overlap = 5838 steps = 196, shift = 25.9, angle = 27.7 degrees Position of cryosparc_P2_J1016_002_volume_map.mrc (#5) relative to cryosparc_P2_J998_007_volume_map.mrc (#8) coordinates: Matrix rotation and translation 0.18843167 0.92511386 0.32963291 -87.50452861 -0.20053410 -0.29232965 0.93505585 106.35149668 0.96139460 -0.24229678 0.13043271 26.52283375 Axis -0.67388889 -0.36160550 -0.64429436 Axis point 0.00000000 89.17696271 8.18874073 Rotation angle (degrees) 119.12605233 Shift along axis 3.42253194 > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!8 models > show #!8 models > hide #!5 models > ~select #5 Nothing selected > show #!6 models > select #6 2 models selected > hide #!8 models > show #!5 models > hide #!5 models > show #!8 models > hide #!6 models > ~select #6 Nothing selected > show #!6 models Fit map cryosparc_P2_J1017_003_volume_map.mrc in map cryosparc_P2_J998_007_volume_map.mrc using 167739 points correlation = 0.9823, correlation about mean = 0.8709, overlap = 6213 steps = 48, shift = 0.564, angle = 0.091 degrees Position of cryosparc_P2_J1017_003_volume_map.mrc (#6) relative to cryosparc_P2_J998_007_volume_map.mrc (#8) coordinates: Matrix rotation and translation 0.99999874 -0.00157890 -0.00016417 0.32173105 0.00157891 0.99999875 0.00002144 -0.30333899 0.00016414 -0.00002170 0.99999999 0.53776811 Axis -0.01358638 -0.10339898 0.99454716 Axis point 155.49146458 208.47932467 0.00000000 Rotation angle (degrees) 0.09096054 Shift along axis 0.56182954 > show #!7 models > hide #!8 models > hide #!6 models > show #!10 models > volume #10 style mesh > volume #10 level 0.1966 > volume #10 level 0.2854 > hide #!7 models > volume #9 level 0.076 > volume #10 level 0.2431 > show #!8 models > hide #!8 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > volume #9 level 0.2216 > volume #9 style mesh > volume #9 level 0.282 > volume #9 level 0.2456 > volume #9 level 0.1054 > volume #9 level 0.2216 > show #!7 models > hide #!7 models > volume #9 level 0.2208 Drag select of 9 cryosparc_P2_J1011_004_volume_map.mrc z flip > select clear > volume #8 level 0.3234 > volume #8 level 0.333 > show #!9 models > volume #8 level 0.3278 > hide #!9 models > volume #8 level 0.1947 > volume #8 level 0.2417 > volume #8 level 0.2991 > volume #8 level 0.09905 > volume #8 level 0.3034 > show #!4 models > volume #3 style mesh > volume #4 level 0.1969 > volume #4 level 0.09707 > volume #4 level 0.1367 > volume #4 level 0.265 > volume #4 level 0.09707 > volume #4 level 0.06268 > hide #!4 models > hide #!8 models > show #!8 models > volume #8 level 0.1304 > volume #8 level 0.1217 > show #!2 models > volume #2 level 0.1697 > volume #2 level 0.292 > volume #2 level 0.05277 > ui mousemode right ""rotate selected models"" > volume #8 level 0.2078 > volume #8 level 0.306 > volume #8 level 0.133 > volume #8 level 0.1756 > volume #8 level 0.306 > volume #8 level 0.2252 > volume #8 level 0.1112 > volume #8 level 0.1304 > volume #8 level 0.2626 > volume #8 level 0.3278 > volume #8 level 0.09905 > volume #8 level 0.106 > volume #8 level 0.1321 > show #!2 models > show #!8 models > hide #!2 models > show #!2 models > ui mousemode right ""rotate selected models"" > select #2 2 models selected > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > volume #8 level 0.0947 > hide #!2 models > show #!2 models > hide #!2 models > ~select #2 Nothing selected > show #!9 models > volume #8 level 0.3191 > volume #8 level 0.2095 > volume #8 level 0.2086 > volume #8 level 0.1843 > volume #8 level 0.3174 > volume #8 level 0.2713 > volume #8 level 0.3017 > volume #8 level 0.1373 > volume #8 level 0.2156 > volume #9 level 0.1751 > volume #9 level 0.2603 > volume #9 level 0.07909 > hide #!9 models > show #!8 models > show #!3 models > volume #3 level 0.2038 > hide #!8 models > show #!8 models > hide #!8 models > hide #!3 models > show #!4 models > volume #4 level 0.2075 > volume #4 level 0.2617 > volume #4 level 0.09905 > volume #4 level 0.06996 > show #!6 models > volume #6 level 0.3103 > volume #8 level 0.3182 > volume #6 level 0.1032 > volume #6 level 0.3069 > hide #!6 models > show #!4 models > volume #4 level 0.02169 > volume #4 level 0.03161 > volume #4 level 0.3305 > volume #4 level 0.2624 > show #!2 models > hide #!2 models > show #!9 models > volume #9 style surface > volume #9 level 0.1209 > volume #9 level 0.2371 > volume #9 level 0.2665 > hide #!9 models > show #!8 models > volume #8 style surface style image Repeated keyword argument ""style"" > volume #8 style surface > volume #8 change image level -0.008343,0 level 0.102,0.8 level 0.4012,1 > volume #8 level 0.1008 > toolshed show > help slab No help found for 'slab' > ui mousemode right clip > help resample No help found for 'resample' > help volume resample > volume #8 level -0.2001 > volume #8 style mesh > volume #8 step 8 > volume #8 > volume #8 level 0.009097 > volume #8 level 0.009922 > volume #8 style surface > volume #8 level 0.01322 > volume #8 step 2 > select #8 4 models selected > select #8 4 models selected > hide #!8 models > select #8 4 models selected > show #!8 models > volume #8 style image > volume #8 level -0.008343,0 level 0.0289,0.2923 level 0.4012,1 > show #!9 models > hide #!8 models > hide #!9 models > show #!8 models > show #!9 models > hide #!8 models > hide #!9 models > show #!8 models > help volume > help write No help found for 'write' > show #!8 target m > select #10 2 models selected > show #!10 target m > show #!10 target m > ~select #10 Nothing selected > ui mousemode right clip > ui mousemode right clip > ui mousemode right ""translate selected models"" > hide #!8 models > show #!8 models > hide #!10 models > volume #8 style mesh > volume #8 level -0.1955 > volume #8 style surface style image colorMode opaque8 showOutlineBox True > imageMode ""box faces"" Repeated keyword argument ""style"" > volume #10 style surface style image Repeated keyword argument ""style"" > volume #8 style mesh region 0,0,0,255,255,255 step 1 > volume #8 level 0.01409 > volume #8 level 0.06801 > ui mousemode right clip > ui mousemode right ""translate selected models"" > volume #10 style mesh > volume #10 change image level -0.01137,0 level 0.1181,0.8 level 0.4793,1 > volume #10 level 0.08544 > volume #8 level 0.1011 > volume #10 level -0.0921 > volume #10 level 0.01821 > volume #10 level 0.1259 > volume resample #10 onGrid #8 > hide #!11 models > show #!11 models > volume #11 level -0.05633 > volume #11 step 8 > volume #11 level -0.01313 > volume #11 step 4 > volume #11 step 1 > volume #11 level 0.07246 > volume #11 level 0.08787 > volume #11 level 0.02624 > save ""/Users/gil/OneDrive - > UHN/Work/RIS_AUFS/projects/BTB/KCTD/KCTD_G_protein_interactions/KCTD9_Cul3_em_rubinstein/cryoSPARC/12July2020_analysis/J1010_resampled.mrc"" > models #11 Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 162, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 363, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1607, in run_provider return cls._get_func(api, ""run_provider"")(session, name, mgr, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/__init__.py"", line 38, in run_provider providers.run_provider(session, name) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/providers.py"", line 45, in run_provider what(session) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/providers.py"", line 27, in _file_save show_save_file_dialog(session) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 113, in show_save_file_dialog _dlg.display(session, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 48, in display run(session, cmd) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/cmd.py"", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/cmd.py"", line 79, in provider_save mgr).save(session, path, **provider_kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/__init__.py"", line 157, in save save_map(session, path, _name, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/volume.py"", line 3910, in save_map save_grid_data(grids, path, session, format_name, options) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/fileformats.py"", line 296, in save_grid_data if matching_grid_path(glist, path): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/fileformats.py"", line 338, in matching_grid_path if realpath(gp) == rp: File ""/Applications/ChimeraX-1.0.app/Contents/MacOS/../Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/posixpath.py"", line 396, in realpath return abspath(path) File ""/Applications/ChimeraX-1.0.app/Contents/MacOS/../Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/posixpath.py"", line 383, in abspath cwd = os.getcwd() FileNotFoundError: [Errno 2] No such file or directory FileNotFoundError: [Errno 2] No such file or directory File ""/Applications/ChimeraX-1.0.app/Contents/MacOS/../Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/posixpath.py"", line 383, in abspath cwd = os.getcwd() See log for complete Python traceback. > save ""/Users/gil/OneDrive - > UHN/Work/RIS_AUFS/projects/BTB/KCTD/KCTD_G_protein_interactions/KCTD9_Cul3_em_rubinstein/cryoSPARC/12July2020_analysis/J1010_resampled.mrc"" > models #11 Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 162, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 363, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1607, in run_provider return cls._get_func(api, ""run_provider"")(session, name, mgr, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/__init__.py"", line 38, in run_provider providers.run_provider(session, name) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/providers.py"", line 45, in run_provider what(session) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/providers.py"", line 27, in _file_save show_save_file_dialog(session) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 113, in show_save_file_dialog _dlg.display(session, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 48, in display run(session, cmd) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/cmd.py"", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/cmd.py"", line 79, in provider_save mgr).save(session, path, **provider_kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/__init__.py"", line 157, in save save_map(session, path, _name, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/volume.py"", line 3910, in save_map save_grid_data(grids, path, session, format_name, options) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/fileformats.py"", line 296, in save_grid_data if matching_grid_path(glist, path): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/fileformats.py"", line 338, in matching_grid_path if realpath(gp) == rp: File ""/Applications/ChimeraX-1.0.app/Contents/MacOS/../Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/posixpath.py"", line 396, in realpath return abspath(path) File ""/Applications/ChimeraX-1.0.app/Contents/MacOS/../Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/posixpath.py"", line 383, in abspath cwd = os.getcwd() FileNotFoundError: [Errno 2] No such file or directory FileNotFoundError: [Errno 2] No such file or directory File ""/Applications/ChimeraX-1.0.app/Contents/MacOS/../Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/posixpath.py"", line 383, in abspath cwd = os.getcwd() See log for complete Python traceback. > save /Users/gil/J1010_resampled.mrc models #11 Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 162, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 363, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1607, in run_provider return cls._get_func(api, ""run_provider"")(session, name, mgr, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/__init__.py"", line 38, in run_provider providers.run_provider(session, name) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/providers.py"", line 45, in run_provider what(session) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/providers.py"", line 27, in _file_save show_save_file_dialog(session) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 113, in show_save_file_dialog _dlg.display(session, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 48, in display run(session, cmd) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/cmd.py"", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/cmd.py"", line 79, in provider_save mgr).save(session, path, **provider_kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/__init__.py"", line 157, in save save_map(session, path, _name, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/volume.py"", line 3910, in save_map save_grid_data(grids, path, session, format_name, options) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/fileformats.py"", line 296, in save_grid_data if matching_grid_path(glist, path): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/fileformats.py"", line 338, in matching_grid_path if realpath(gp) == rp: File ""/Applications/ChimeraX-1.0.app/Contents/MacOS/../Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/posixpath.py"", line 396, in realpath return abspath(path) File ""/Applications/ChimeraX-1.0.app/Contents/MacOS/../Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/posixpath.py"", line 383, in abspath cwd = os.getcwd() FileNotFoundError: [Errno 2] No such file or directory FileNotFoundError: [Errno 2] No such file or directory File ""/Applications/ChimeraX-1.0.app/Contents/MacOS/../Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/posixpath.py"", line 383, in abspath cwd = os.getcwd() See log for complete Python traceback. > save J1010_resampled_.mrc #11 Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/cmd_line/tool.py"", line 258, in execute cmd.run(cmd_text) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/cmd.py"", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/cmd.py"", line 79, in provider_save mgr).save(session, path, **provider_kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/__init__.py"", line 157, in save save_map(session, path, _name, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/volume.py"", line 3910, in save_map save_grid_data(grids, path, session, format_name, options) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/fileformats.py"", line 296, in save_grid_data if matching_grid_path(glist, path): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/fileformats.py"", line 338, in matching_grid_path if realpath(gp) == rp: File ""/Applications/ChimeraX-1.0.app/Contents/MacOS/../Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/posixpath.py"", line 396, in realpath return abspath(path) File ""/Applications/ChimeraX-1.0.app/Contents/MacOS/../Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/posixpath.py"", line 383, in abspath cwd = os.getcwd() FileNotFoundError: [Errno 2] No such file or directory FileNotFoundError: [Errno 2] No such file or directory File ""/Applications/ChimeraX-1.0.app/Contents/MacOS/../Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/posixpath.py"", line 383, in abspath cwd = os.getcwd() See log for complete Python traceback. > ui tool show Log > save /Users/gil/aaa.mrc models #11 Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 162, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 363, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1607, in run_provider return cls._get_func(api, ""run_provider"")(session, name, mgr, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/__init__.py"", line 38, in run_provider providers.run_provider(session, name) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/providers.py"", line 45, in run_provider what(session) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/providers.py"", line 27, in _file_save show_save_file_dialog(session) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 113, in show_save_file_dialog _dlg.display(session, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 48, in display run(session, cmd) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/cmd.py"", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/cmd.py"", line 79, in provider_save mgr).save(session, path, **provider_kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/__init__.py"", line 157, in save save_map(session, path, _name, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/volume.py"", line 3910, in save_map save_grid_data(grids, path, session, format_name, options) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/fileformats.py"", line 296, in save_grid_data if matching_grid_path(glist, path): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/fileformats.py"", line 338, in matching_grid_path if realpath(gp) == rp: File ""/Applications/ChimeraX-1.0.app/Contents/MacOS/../Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/posixpath.py"", line 396, in realpath return abspath(path) File ""/Applications/ChimeraX-1.0.app/Contents/MacOS/../Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/posixpath.py"", line 383, in abspath cwd = os.getcwd() FileNotFoundError: [Errno 2] No such file or directory FileNotFoundError: [Errno 2] No such file or directory File ""/Applications/ChimeraX-1.0.app/Contents/MacOS/../Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/posixpath.py"", line 383, in abspath cwd = os.getcwd() See log for complete Python traceback. OpenGL version: 4.1 INTEL-14.6.18 OpenGL renderer: Intel(R) Iris(TM) Graphics 550 OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro13,2 Processor Name: Dual-Core Intel Core i5 Processor Speed: 2.9 GHz Number of Processors: 1 Total Number of Cores: 2 L2 Cache (per Core): 256 KB L3 Cache: 4 MB Hyper-Threading Technology: Enabled Memory: 8 GB Boot ROM Version: 267.0.0.0.0 SMC Version (system): 2.37f24 Software: System Software Overview: System Version: macOS 10.15.5 (19F101) Kernel Version: Darwin 19.5.0 Time since boot: 1 day 11:41 Graphics/Displays: Intel Iris Graphics 550: Chipset Model: Intel Iris Graphics 550 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x1927 Revision ID: 0x000a Metal: Supported, feature set macOS GPUFamily2 v1 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 }}} " defect closed normal Input/Output can't reproduce all ChimeraX