id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3469 _resize_dock_widget: 'QDockWidget' object has no attribute 'resizeDocks chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.19041 ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""C:\Users\nnoinaj\Google Drive\purdue\manuscripts\2020\wu- > bakelar_etal_science\Figures\fig1\bamND_model_map\bamnd_mdff2_noh_real_space_refined.pdb"" > format pdb Chain information for bamnd_mdff2_noh_real_space_refined.pdb #1 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available > open ""C:/Users/nnoinaj/Google Drive/purdue/manuscripts/2020/wu- > bakelar_etal_science/Figures/fig1/bamND_model_map/BAM_E3.mrc"" Opened BAM_E3.mrc, grid size 200,200,200, pixel 1.05, shown at level 0.0143, step 1, values float32 > set bgColor white > lighting soft > hide atoms > hide cartoons > show cartoons > volume #2 level 0.01804 > ui tool show ""Segment Map"" Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\ui\widgets\composite.py"", line 228, in toggle_panel_display _resize_dock_widget(self) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\ui\widgets\composite.py"", line 238, in _resize_dock_widget p.window().resizeDocks([p], [p.widget().sizeHint().height()], Qt.Vertical) AttributeError: 'QDockWidget' object has no attribute 'resizeDocks' AttributeError: 'QDockWidget' object has no attribute 'resizeDocks' File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\ui\widgets\composite.py"", line 238, in _resize_dock_widget p.window().resizeDocks([p], [p.widget().sizeHint().height()], Qt.Vertical) See log for complete Python traceback. Segmenting BAM_E3.mrc, density threshold 0.018035 Showing BAM_E3.seg - 0 regions, 0 surfaces Only showing 60 of 62 regions. Showing 60 of 62 region surfaces 1568 watershed regions, grouped to 62 regions Smoothing and grouping, standard deviation 5 voxels Showing 28 region surfaces Got 28 regions after smoothing 5 voxels. Smoothing and grouping, standard deviation 6 voxels Showing 19 region surfaces Got 19 regions after smoothing 6 voxels. Smoothing and grouping, standard deviation 7 voxels Showing 5 region surfaces Got 5 regions after smoothing 7 voxels. Smoothing and grouping, standard deviation 8 voxels Showing 4 region surfaces Got 4 regions after smoothing 8 voxels. Ungrouped to 2 regions Ungrouped to 18 regions Ungrouped to 16 regions Segmenting BAM_E3.mrc, density threshold 0.018035 Showing BAM_E3.seg - 0 regions, 0 surfaces Showing 62 region surfaces 1568 watershed regions, grouped to 62 regions > split #1 chains Chain information for bamnd_mdff2_noh_real_space_refined.pdb A #1.1 --- Chain | Description A | No description available Chain information for bamnd_mdff2_noh_real_space_refined.pdb B #1.2 --- Chain | Description B | No description available Chain information for bamnd_mdff2_noh_real_space_refined.pdb C #1.3 --- Chain | Description C | No description available Chain information for bamnd_mdff2_noh_real_space_refined.pdb D #1.4 --- Chain | Description D | No description available Chain information for bamnd_mdff2_noh_real_space_refined.pdb E #1.5 --- Chain | Description E | No description available Split bamnd_mdff2_noh_real_space_refined.pdb (#1) into 5 models > hide #!1 models > hide #1.1 models > hide #1.2 models > hide #1.3 models > hide #1.5 models > hide #1.4 models > show #1.1 models > select #1.1 6183 atoms, 6326 bonds, 1 model selected Simulating map res 3.000, grid 1.000 > molmap #1.1 3.000000 sigmaFactor 0.187 gridSpacing 1.000000 replace false Please select a region to fit to > show #!4 models > hide #!1 models > hide #1.1 models > hide #!3 models > close #4 Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\segger\fit_dialog.py"", line 294, in _fit self.Fit() File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\segger\fit_dialog.py"", line 1339, in Fit func() File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\segger\fit_dialog.py"", line 2237, in FitMapToSelRGroup mm = fmap.data.matrix() AttributeError: 'NoneType' object has no attribute 'matrix' AttributeError: 'NoneType' object has no attribute 'matrix' File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\segger\fit_dialog.py"", line 2237, in FitMapToSelRGroup mm = fmap.data.matrix() See log for complete Python traceback. > show #1.1 models Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\segger\fit_dialog.py"", line 294, in _fit self.Fit() File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\segger\fit_dialog.py"", line 1339, in Fit func() File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\segger\fit_dialog.py"", line 2237, in FitMapToSelRGroup mm = fmap.data.matrix() AttributeError: 'NoneType' object has no attribute 'matrix' AttributeError: 'NoneType' object has no attribute 'matrix' File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\segger\fit_dialog.py"", line 2237, in FitMapToSelRGroup mm = fmap.data.matrix() See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 445.75 OpenGL renderer: GeForce RTX 2080 with Max-Q Design/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: Micro-Star International Co., Ltd. Model: GS65 Stealth 9SG OS: Microsoft Windows 10 Enterprise (Build 19041) Memory: 34,196,369,408 MaxProcessMemory: 137,438,953,344 CPU: 16 Intel(R) Core(TM) i9-9880H CPU @ 2.30GHz"" PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 }}} " defect closed normal UI fixed all ChimeraX