id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
3184	Save options widgets deleted	voorhees@…	Eric Pettersen	"{{{
The following bug report has been submitted:
Platform:        Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 1.0 (2020-05-07)
Description
Attemping to save a file after doing a large number of manipulations causes this error

Log:
UCSF ChimeraX version: 1.0rc202005070439 (2020-05-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open ""/Users/rebecca/Box
> Sync/Voorhees_lab/Manuscripts_preparation/EMC/Deposition/PDB/EMC_assembled-
> coot_17-WO-hydrogens-RSR-577_real_space_refined.pdb"" format pdb

Chain information for EMC_assembled-coot_17-WO-hydrogens-
RSR-577_real_space_refined.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
H | No description available  
I | No description available  
  

> set bgColor white

> lighting simple

> lighting soft

> lighting full

> lighting simple

> lighting soft

> lighting full

> lighting shadows false

> lighting flat

> graphics silhouettes false

> show atoms

> hide atoms

> hide atoms

> show cartoons

Traceback (most recent call last):  
File
""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/gui.py"", line 1543, in <lambda>  
action.triggered.connect(lambda arg, cb = callback: cb())  
File
""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/save_command/dialog.py"", line 111, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip=""Save output
file"",  
File
""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/save_command/dialog.py"", line 122, in show_save_file_dialog  
_dlg.display(session, **kw)  
File
""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/save_command/dialog.py"", line 24, in display  
self._customize_dialog(session, dialog)  
File
""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/save_command/dialog.py"", line 86, in _customize_dialog  
self._format_selected(session, dialog)  
File
""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/save_command/dialog.py"", line 98, in _format_selected  
self._options_layout.addWidget(self._current_option)  
RuntimeError: wrapped C/C++ object of type SaveOptionsWidget has been deleted  
  
RuntimeError: wrapped C/C++ object of type SaveOptionsWidget has been deleted  
  
File
""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/save_command/dialog.py"", line 98, in _format_selected  
self._options_layout.addWidget(self._current_option)  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 INTEL-10.36.23
OpenGL renderer: Intel(R) Iris(TM) Graphics 550
OpenGL vendor: Intel Inc.Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro13,2
      Processor Name: Intel Core i7
      Processor Speed: 3.3 GHz
      Number of Processors: 1
      Total Number of Cores: 2
      L2 Cache (per Core): 256 KB
      L3 Cache: 4 MB
      Memory: 16 GB
      Boot ROM Version: 254.0.0.0.0
      SMC Version (system): 2.37f20

Software:

    System Software Overview:

      System Version: macOS 10.13.6 (17G6030)
      Kernel Version: Darwin 17.7.0
      Time since boot: 70 days 16:24

Graphics/Displays:

    Intel Iris Graphics 550:

      Chipset Model: Intel Iris Graphics 550
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x1927
      Revision ID: 0x000a
      Metal: Supported, feature set macOS GPUFamily1 v3
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Framebuffer Depth: 24-Bit Color (ARGB8888)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Automatically Adjust Brightness: No

}}}
"	defect	closed	normal		Input/Output		duplicate						all	ChimeraX