id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2881 Shell does not start Tristan Croll Conrad Huang "{{{ The following bug report has been submitted: Platform: Linux-5.4.13-201.fc31.x86_64-x86_64-with-fedora-31-Thirty_One ChimeraX Version: 0.92 (2020-02-23) Description When trying to open the shell via the menu. Also happened in today's Windows build (couldn't report - blocked by firewall). Log: Startup Messages --- warning | 'clip' is a prefix of an existing command 'clipper' UCSF ChimeraX version: 0.92 (2020-02-23) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > toolshed show Shell /opt/UCSF/chimerax-2020.02.23/lib/python3.7/site- packages/IPython/core/history.py:226: UserWarning: IPython History requires SQLite, your history will not be saved warn(""IPython History requires SQLite, your history will not be saved"") Traceback (most recent call last): File ""/opt/UCSF/chimerax-2020.02.23/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 621, in start_tool ti = api._api_caller.start_tool(api, session, self, tool_info) File ""/opt/UCSF/chimerax-2020.02.23/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1612, in start_tool return cls._get_func(api, ""start_tool"")(session, ti.name) File ""/opt/UCSF/chimerax-2020.02.23/lib/python3.7/site- packages/chimerax/shell/__init__.py"", line 21, in start_tool return ShellUI(session, tool_name) File ""/opt/UCSF/chimerax-2020.02.23/lib/python3.7/site- packages/chimerax/shell/tool.py"", line 39, in __init__ kernel_client.start_channels() File ""/opt/UCSF/chimerax-2020.02.23/lib/python3.7/site- packages/qtconsole/kernel_mixins.py"", line 47, in start_channels super(QtKernelClientMixin, self).start_channels(*args, **kw) File ""/opt/UCSF/chimerax-2020.02.23/lib/python3.7/site- packages/ipykernel/inprocess/client.py"", line 64, in start_channels super(InProcessKernelClient, self).start_channels() File ""/opt/UCSF/chimerax-2020.02.23/lib/python3.7/site- packages/jupyter_client/client.py"", line 118, in start_channels self.control_channel.start() File ""/opt/UCSF/chimerax-2020.02.23/lib/python3.7/site- packages/jupyter_client/client.py"", line 200, in control_channel socket, self.session, self.ioloop TypeError: ChannelABC() takes no arguments During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/opt/UCSF/chimerax-2020.02.23/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 1347, in run(ses, ""toolshed show %s"" % StringArg.unparse(tool_name))) File ""/opt/UCSF/chimerax-2020.02.23/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/opt/UCSF/chimerax-2020.02.23/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2837, in run result = ci.function(session, **kw_args) File ""/opt/UCSF/chimerax-2020.02.23/lib/python3.7/site- packages/chimerax/core/commands/toolshed.py"", line 339, in toolshed_show bi.start_tool(session, name) File ""/opt/UCSF/chimerax-2020.02.23/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 627, in start_tool ""start_tool() failed for tool %s in bundle %s:\n%s"" % (tool_name, self.name, str(e))) chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Shell in bundle ChimeraX-Shell: ChannelABC() takes no arguments chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Shell in bundle ChimeraX-Shell: ChannelABC() takes no arguments File ""/opt/UCSF/chimerax-2020.02.23/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 627, in start_tool ""start_tool() failed for tool %s in bundle %s:\n%s"" % (tool_name, self.name, str(e))) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 440.44 OpenGL renderer: GeForce GTX 1070/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal General Controls fixed chimera-programmers all ChimeraX