id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2722 Wrong version of ChimeraX for ISOLDE john.heumann@… Tristan Croll "{{{ The following bug report has been submitted: Platform: Linux-3.10.0-1062.9.1.el7.x86_64-x86_64-with-redhat-7.7-Maipo ChimeraX Version: 0.9 (2019-06-06) Description Installing and starting Isolode from the production 0.9 release gives a tool start up error. (I'm using the production release since the 0.92 daily says Isolde is not yet avaiable. Tool seems to be running despite the error. This is on RHEL7.7. Log: Startup Messages --- warning | 'clip' is a prefix of an existing command 'clipper' UCSF ChimeraX version: 0.9 (2019-06-06) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX Downloading bundle ChimeraX_ISOLDE-1.0b3-cp37-cp37m-linux_x86_64.whl Successfully installed ChimeraX-ISOLDE-1.0b3 Installed ChimeraX-ISOLDE (1.0b3) 'clip' is a prefix of an existing command 'clipper' > toolshed show ISOLDE Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 627, in start_tool ti = api._api_caller.start_tool(api, session, self, tool_info) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1435, in start_tool return cls._get_func(api, ""start_tool"")(session, ti.name) File ""/home/heumannj/.local/share/ChimeraX/0.9/site- packages/chimerax/isolde/__init__.py"", line 31, in start_tool return tools.get_singleton(session, ISOLDE_ToolUI, 'ISOLDE', create=True) File ""/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/core/tools.py"", line 214, in get_singleton tinst = tool_class(session, tool_name, **kw) File ""/home/heumannj/.local/share/ChimeraX/0.9/site- packages/chimerax/isolde/tool.py"", line 167, in __init__ from . import isolde File ""/home/heumannj/.local/share/ChimeraX/0.9/site- packages/chimerax/isolde/isolde.py"", line 35, in from chimerax import clipper File ""/home/heumannj/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/__init__.py"", line 26, in __version__ = _version() File ""/home/heumannj/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/__init__.py"", line 24, in _version return pkg_resources.require('ChimeraX-Clipper')[0].version File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/pkg_resources/__init__.py"", line 900, in require needed = self.resolve(parse_requirements(requirements)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/pkg_resources/__init__.py"", line 791, in resolve raise VersionConflict(dist, req).with_context(dependent_req) pkg_resources.ContextualVersionConflict: (ChimeraX-Core 0.9 (/opt/UCSF/ChimeraX/lib/python3.7/site-packages), Requirement.parse('ChimeraX- Core==0.91'), {'ChimeraX-Clipper'}) During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/ui/gui.py"", line 1137, in run(ses, ""toolshed show %s"" % quote_if_necessary(tool_name))) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2632, in run result = ci.function(session, **kw_args) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/commands/toolshed.py"", line 337, in toolshed_show bi.start_tool(session, tool_name) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 633, in start_tool ""start_tool() failed for tool %s in bundle %s:\n%s"" % (tool_name, self.name, str(e))) chimerax.core.toolshed.ToolshedError: start_tool() failed for tool ISOLDE in bundle ChimeraX-ISOLDE: (ChimeraX-Core 0.9 (/opt/UCSF/ChimeraX/lib/python3.7/site-packages), Requirement.parse('ChimeraX-Core==0.91'), {'ChimeraX-Clipper'}) chimerax.core.toolshed.ToolshedError: start_tool() failed for tool ISOLDE in bundle ChimeraX-ISOLDE: (ChimeraX-Core 0.9 (/opt/UCSF/ChimeraX/lib/python3.7/site-packages), Requirement.parse('ChimeraX-Core==0.91'), {'ChimeraX-Clipper'}) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 633, in start_tool ""start_tool() failed for tool %s in bundle %s:\n%s"" % (tool_name, self.name, str(e))) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 440.44 OpenGL renderer: GeForce GTX 1080/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Third Party not a bug all ChimeraX