id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2594 Crash opening model lynnettj@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Darwin-18.7.0-x86_64-i386-64bit ChimeraX Version: 0.91 (2019-09-21) Description Tried to use the command line to open a model file. Process: ChimeraX [86388] Path: /Applications/ChimeraX.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 0.91.0 (0.91.0.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [86388] User ID: 501 Date/Time: 2019-11-20 16:46:15.808 -0800 OS Version: Mac OS X 10.14.6 (18G87) Report Version: 12 Bridge OS Version: 3.6 (16P6568) Anonymous UUID: 19B202EA-2AEA-B7E4-0983-A274FDA27900 Sleep/Wake UUID: 30825749-8C50-4C25-A351-69E345DBD920 Time Awake Since Boot: 56000 seconds Time Since Wake: 1200 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0: --> __TEXT 0000000106fcf000-0000000106fd0000 [ 4K] r-x/rwx SM=COW /Applications/ChimeraX.app/Contents/MacOS/ChimeraX Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff584852c6 __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff58540bf1 pthread_kill + 284 2 libsystem_c.dylib 0x00007fff583a2d8a raise + 26 3 libsystem_platform.dylib 0x00007fff58535b5d _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 GLEngine 0x00007fff3611adf7 glDrawArrays_ACC_Exec + 713 6 QtGui 0x0000000114a3d3cb 0x1146e4000 + 3511243 7 QtGui 0x00000001149cffa5 0x1146e4000 + 3063717 8 QtGui 0x00000001149cf17a QPlatformBackingStore::composeAndFlush(QWindow*, QRegion const&, QPoint const&, QPlatformTextureList*, bool) + 2314 9 QtWidgets 0x000000011415b8a3 0x114143000 + 100515 10 QtWidgets 0x000000011415bc1e 0x114143000 + 101406 11 QtWidgets 0x00000001141611f7 0x114143000 + 123383 12 QtWidgets 0x000000011418fabd QWidget::event(QEvent*) + 1645 13 QtWidgets 0x00000001142a0bf5 QMainWindow::event(QEvent*) + 277 14 QtWidgets.so 0x0000000111b28e70 sipQMainWindow::event(QEvent*) + 192 15 QtWidgets 0x000000011415376d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269 16 QtWidgets 0x0000000114154b72 QApplication::notify(QObject*, QEvent*) + 594 17 QtWidgets.so 0x0000000111bd43ca sipQApplication::notify(QObject*, QEvent*) + 234 18 QtCore 0x0000000114e1d7c4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212 19 QtCore 0x0000000114e1e9fe QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 878 20 libqcocoa.dylib 0x000000011e94bd69 0x11e916000 + 220521 21 libqcocoa.dylib 0x000000011e94c4d8 0x11e916000 + 222424 22 com.apple.CoreFoundation 0x00007fff2c411683 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17 23 com.apple.CoreFoundation 0x00007fff2c411629 __CFRunLoopDoSource0 + 108 24 com.apple.CoreFoundation 0x00007fff2c3f5043 __CFRunLoopDoSources0 + 283 25 com.apple.CoreFoundation 0x00007fff2c3f45b5 __CFRunLoopRun + 1189 26 com.apple.CoreFoundation 0x00007fff2c3f3ebe CFRunLoopRunSpecific + 455 27 com.apple.HIToolbox 0x00007fff2b6531ab RunCurrentEventLoopInMode + 292 28 com.apple.HIToolbox 0x00007fff2b652ee5 ReceiveNextEventCommon + 603 29 com.apple.HIToolbox 0x00007fff2b652c76 _BlockUntilNextEventMatchingListInModeWithFilter + 64 30 com.apple.AppKit 0x00007fff299eb79d _DPSNextEvent + 1135 31 com.apple.AppKit 0x00007fff299ea48b -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1361 32 com.apple.AppKit 0x00007fff299e45a8 -[NSApplication run] + 699 33 libqcocoa.dylib 0x000000011e94b253 0x11e916000 + 217683 34 QtCore 0x0000000114e18ddf QEventLoop::exec(QFlags) + 431 35 QtCore 0x0000000114e1ddd2 QCoreApplication::exec() + 130 36 QtWidgets.so 0x0000000111cc37d2 meth_QApplication_exec_(_object*, _object*) + 82 37 org.python.python 0x0000000106ff4edb _PyMethodDef_RawFastCallKeywords + 251 38 org.python.python 0x0000000106ff43dc _PyCFunction_FastCallKeywords + 44 39 org.python.python 0x00000001070bdfc9 call_function + 617 40 org.python.python 0x00000001070b667a _PyEval_EvalFrameDefault + 5562 41 org.python.python 0x0000000106ff4893 function_code_fastcall + 195 42 org.python.python 0x00000001070be031 call_function + 721 43 org.python.python 0x00000001070b667a _PyEval_EvalFrameDefault + 5562 44 org.python.python 0x00000001070bec84 _PyEval_EvalCodeWithName + 2788 45 org.python.python 0x0000000106ff4396 _PyFunction_FastCallKeywords + 230 46 org.python.python 0x00000001070be031 call_function + 721 47 org.python.python 0x00000001070b670b _PyEval_EvalFrameDefault + 5707 48 org.python.python 0x00000001070bec84 _PyEval_EvalCodeWithName + 2788 49 org.python.python 0x00000001070b5020 PyEval_EvalCode + 48 50 org.python.python 0x00000001070b2683 builtin_exec + 563 51 org.python.python 0x0000000106ff508e _PyMethodDef_RawFastCallKeywords + 686 52 org.python.python 0x0000000106ff43dc _PyCFunction_FastCallKeywords + 44 53 org.python.python 0x00000001070bdfc9 call_function + 617 54 org.python.python 0x00000001070b670b _PyEval_EvalFrameDefault + 5707 55 org.python.python 0x00000001070bec84 _PyEval_EvalCodeWithName + 2788 56 org.python.python 0x0000000106ff4396 _PyFunction_FastCallKeywords + 230 57 org.python.python 0x00000001070be031 call_function + 721 58 org.python.python 0x00000001070b670b _PyEval_EvalFrameDefault + 5707 59 org.python.python 0x00000001070bec84 _PyEval_EvalCodeWithName + 2788 60 org.python.python 0x0000000106ff3e72 _PyFunction_FastCallDict + 450 61 org.python.python 0x00000001071130e3 pymain_run_module + 147 62 org.python.python 0x00000001071121a1 pymain_main + 5041 63 org.python.python 0x0000000107110de3 Py_Main + 51 64 edu.ucsf.cgl.ChimeraX 0x0000000106fcfe01 main + 593 65 libdyld.dylib 0x00007fff5834a3d5 start + 1 Thread 1: 0 libsystem_kernel.dylib 0x00007fff5848286a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5854156e _pthread_cond_wait + 722 2 libopenblasp-r0.3.7.dev.dylib 0x00000001088ccc0b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 2: 0 libsystem_kernel.dylib 0x00007fff5848286a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5854156e _pthread_cond_wait + 722 2 libopenblasp-r0.3.7.dev.dylib 0x00000001088ccc0b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 3: 0 libsystem_kernel.dylib 0x00007fff5848286a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5854156e _pthread_cond_wait + 722 2 libopenblasp-r0.3.7.dev.dylib 0x00000001088ccc0b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 4:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff5847f22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5847f76c mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff2c3f51ee __CFRunLoopServiceMachPort + 328 3 com.apple.CoreFoundation 0x00007fff2c3f475c __CFRunLoopRun + 1612 4 com.apple.CoreFoundation 0x00007fff2c3f3ebe CFRunLoopRunSpecific + 455 5 com.apple.AppKit 0x00007fff299f34c2 _NSEventThread + 175 6 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 7 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 8 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 5:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff5847f22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5847f76c mach_msg + 60 2 QtWebEngineCore 0x0000000117bc13ed 0x115a16000 + 35304429 3 QtWebEngineCore 0x0000000117bc12ef 0x115a16000 + 35304175 4 QtWebEngineCore 0x0000000117b7511d 0x115a16000 + 34992413 5 QtWebEngineCore 0x0000000117b9e145 0x115a16000 + 35160389 6 QtWebEngineCore 0x0000000117bf0a7c 0x115a16000 + 35498620 7 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 8 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 6:: DnsConfigService 0 libsystem_kernel.dylib 0x00007fff5848578e kevent + 10 1 QtWebEngineCore 0x0000000117e82a59 0x115a16000 + 38193753 2 QtWebEngineCore 0x0000000117e7fd6d 0x115a16000 + 38182253 3 QtWebEngineCore 0x0000000117c36d8c 0x115a16000 + 35786124 4 QtWebEngineCore 0x0000000117b9e145 0x115a16000 + 35160389 5 QtWebEngineCore 0x0000000117bf0a7c 0x115a16000 + 35498620 6 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 7 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 7:: TaskSchedulerServiceThread 0 libsystem_kernel.dylib 0x00007fff5848578e kevent + 10 1 QtWebEngineCore 0x0000000117e82a59 0x115a16000 + 38193753 2 QtWebEngineCore 0x0000000117e7fd6d 0x115a16000 + 38182253 3 QtWebEngineCore 0x0000000117c36d74 0x115a16000 + 35786100 4 QtWebEngineCore 0x0000000117b9e145 0x115a16000 + 35160389 5 QtWebEngineCore 0x0000000117bdfb34 0x115a16000 + 35429172 6 QtWebEngineCore 0x0000000117bf0a7c 0x115a16000 + 35498620 7 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 8 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 8:: TaskSchedulerForegroundWorker 0 libsystem_kernel.dylib 0x00007fff5847f22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5847f76c mach_msg + 60 2 QtWebEngineCore 0x0000000117bc13ed 0x115a16000 + 35304429 3 QtWebEngineCore 0x0000000117bc14e1 0x115a16000 + 35304673 4 QtWebEngineCore 0x0000000117bd8de8 0x115a16000 + 35401192 5 QtWebEngineCore 0x0000000117bd971b 0x115a16000 + 35403547 6 QtWebEngineCore 0x0000000117bd9384 0x115a16000 + 35402628 7 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 8 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 9:: TaskSchedulerForegroundBlockingWorker 0 libsystem_kernel.dylib 0x00007fff5847f22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5847f76c mach_msg + 60 2 QtWebEngineCore 0x0000000117bc13ed 0x115a16000 + 35304429 3 QtWebEngineCore 0x0000000117bc14e1 0x115a16000 + 35304673 4 QtWebEngineCore 0x0000000117bd8de8 0x115a16000 + 35401192 5 QtWebEngineCore 0x0000000117bd971b 0x115a16000 + 35403547 6 QtWebEngineCore 0x0000000117bd9384 0x115a16000 + 35402628 7 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 8 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 10:: TaskSchedulerBackgroundWorker 0 libsystem_kernel.dylib 0x00007fff5847f22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5847f76c mach_msg + 60 2 QtWebEngineCore 0x0000000117bc13ed 0x115a16000 + 35304429 3 QtWebEngineCore 0x0000000117bc14e1 0x115a16000 + 35304673 4 QtWebEngineCore 0x0000000117bd8de8 0x115a16000 + 35401192 5 QtWebEngineCore 0x0000000117bd971b 0x115a16000 + 35403547 6 QtWebEngineCore 0x0000000117bd92f4 0x115a16000 + 35402484 7 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 8 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 11:: TaskSchedulerBackgroundBlockingWorker 0 libsystem_kernel.dylib 0x00007fff5847f22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5847f76c mach_msg + 60 2 QtWebEngineCore 0x0000000117bc13ed 0x115a16000 + 35304429 3 QtWebEngineCore 0x0000000117bc14e1 0x115a16000 + 35304673 4 QtWebEngineCore 0x0000000117bd8de8 0x115a16000 + 35401192 5 QtWebEngineCore 0x0000000117bd971b 0x115a16000 + 35403547 6 QtWebEngineCore 0x0000000117bd92f4 0x115a16000 + 35402484 7 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 8 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 12:: Chrome_IOThread 0 libsystem_kernel.dylib 0x00007fff5848578e kevent + 10 1 QtWebEngineCore 0x0000000117e82a59 0x115a16000 + 38193753 2 QtWebEngineCore 0x0000000117e7fd6d 0x115a16000 + 38182253 3 QtWebEngineCore 0x0000000117c36d74 0x115a16000 + 35786100 4 QtWebEngineCore 0x0000000117b9e145 0x115a16000 + 35160389 5 QtWebEngineCore 0x00000001175045d4 0x115a16000 + 28239316 6 QtWebEngineCore 0x0000000117bf0a7c 0x115a16000 + 35498620 7 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 8 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 13:: TaskSchedulerSingleThreadSharedBackgroundBlocking0 0 libsystem_kernel.dylib 0x00007fff5847f22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5847f76c mach_msg + 60 2 QtWebEngineCore 0x0000000117bc13ed 0x115a16000 + 35304429 3 QtWebEngineCore 0x0000000117bc12ef 0x115a16000 + 35304175 4 QtWebEngineCore 0x0000000117bd8dda 0x115a16000 + 35401178 5 QtWebEngineCore 0x0000000117bd947f 0x115a16000 + 35402879 6 QtWebEngineCore 0x0000000117bd9324 0x115a16000 + 35402532 7 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 8 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 14:: CompositorTileWorker1/72451 0 libsystem_kernel.dylib 0x00007fff5848286a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5854156e _pthread_cond_wait + 722 2 QtWebEngineCore 0x0000000117c2f058 0x115a16000 + 35754072 3 QtWebEngineCore 0x0000000118bb7658 0x115a16000 + 52041304 4 QtWebEngineCore 0x0000000117bef754 0x115a16000 + 35493716 5 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 6 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 7 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 8 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 15:: AudioThread 0 libsystem_kernel.dylib 0x00007fff5847f22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5847f76c mach_msg + 60 2 QtWebEngineCore 0x0000000117bc13ed 0x115a16000 + 35304429 3 QtWebEngineCore 0x0000000117bc12ef 0x115a16000 + 35304175 4 QtWebEngineCore 0x0000000117b7511d 0x115a16000 + 34992413 5 QtWebEngineCore 0x0000000117b9e145 0x115a16000 + 35160389 6 QtWebEngineCore 0x0000000117bf0a7c 0x115a16000 + 35498620 7 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 8 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 16:: Chrome_InProcGpuThread 0 libsystem_kernel.dylib 0x00007fff5847f22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5847f76c mach_msg + 60 2 QtWebEngineCore 0x0000000117bc13ed 0x115a16000 + 35304429 3 QtWebEngineCore 0x0000000117b75112 0x115a16000 + 34992402 4 QtWebEngineCore 0x0000000117b9e145 0x115a16000 + 35160389 5 QtWebEngineCore 0x0000000117bf0a7c 0x115a16000 + 35498620 6 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 7 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 17:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff5848578e kevent + 10 1 QtWebEngineCore 0x0000000117e82a59 0x115a16000 + 38193753 2 QtWebEngineCore 0x0000000117e7fd6d 0x115a16000 + 38182253 3 QtWebEngineCore 0x0000000117c36d8c 0x115a16000 + 35786124 4 QtWebEngineCore 0x0000000117b9e145 0x115a16000 + 35160389 5 QtWebEngineCore 0x0000000117bf0a7c 0x115a16000 + 35498620 6 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 7 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 18:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff5847f22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5847f76c mach_msg + 60 2 QtWebEngineCore 0x0000000117bc13ed 0x115a16000 + 35304429 3 QtWebEngineCore 0x0000000117bc12ef 0x115a16000 + 35304175 4 QtWebEngineCore 0x0000000117b7511d 0x115a16000 + 34992413 5 QtWebEngineCore 0x0000000117b9e145 0x115a16000 + 35160389 6 QtWebEngineCore 0x0000000117bf0a7c 0x115a16000 + 35498620 7 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 8 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 19:: TaskSchedulerSingleThreadForegroundBlocking1 0 libsystem_kernel.dylib 0x00007fff5847f22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5847f76c mach_msg + 60 2 QtWebEngineCore 0x0000000117bc13ed 0x115a16000 + 35304429 3 QtWebEngineCore 0x0000000117bc12ef 0x115a16000 + 35304175 4 QtWebEngineCore 0x0000000117bd8dda 0x115a16000 + 35401178 5 QtWebEngineCore 0x0000000117bd971b 0x115a16000 + 35403547 6 QtWebEngineCore 0x0000000117bd93e4 0x115a16000 + 35402724 7 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 8 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 20:: QFileInfoGatherer 0 libsystem_kernel.dylib 0x00007fff5848286a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5854156e _pthread_cond_wait + 722 2 QtCore 0x0000000114c5ec9b 0x114c34000 + 175259 3 QtCore 0x0000000114c5ebfc QWaitCondition::wait(QMutex*, QDeadlineTimer) + 108 4 QtWidgets 0x000000011437e7a2 0x114143000 + 2340770 5 QtCore 0x0000000114c564a3 0x114c34000 + 140451 6 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 7 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 8 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 21:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff5847f22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5847f76c mach_msg + 60 2 QtWebEngineCore 0x0000000117bc13ed 0x115a16000 + 35304429 3 QtWebEngineCore 0x0000000117bc12ef 0x115a16000 + 35304175 4 QtWebEngineCore 0x0000000117b7511d 0x115a16000 + 34992413 5 QtWebEngineCore 0x0000000117b9e145 0x115a16000 + 35160389 6 QtWebEngineCore 0x0000000117bf0a7c 0x115a16000 + 35498620 7 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 8 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 22:: QFileInfoGatherer 0 libsystem_kernel.dylib 0x00007fff5848286a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5854156e _pthread_cond_wait + 722 2 QtCore 0x0000000114c5ec9b 0x114c34000 + 175259 3 QtCore 0x0000000114c5ebfc QWaitCondition::wait(QMutex*, QDeadlineTimer) + 108 4 QtWidgets 0x000000011437e7a2 0x114143000 + 2340770 5 QtCore 0x0000000114c564a3 0x114c34000 + 140451 6 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 7 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 8 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 23:: Dispatch queue: com.apple.opengl.cvmDoWork 0 libsystem_kernel.dylib 0x00007fff5847f22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5847f76c mach_msg + 60 2 libdispatch.dylib 0x00007fff583113e7 _dispatch_mach_send_and_wait_for_reply + 609 3 libdispatch.dylib 0x00007fff58311882 dispatch_mach_send_with_result_and_wait_for_reply + 50 4 libxpc.dylib 0x00007fff5857c647 xpc_connection_send_message_with_reply_sync + 178 5 libCoreVMClient.dylib 0x00007fff354a8541 cvms_element_build_and_get_internal + 229 6 libCoreVMClient.dylib 0x00007fff354a844d cvms_element_build_from_source + 185 7 libCVMSPluginSupport.dylib 0x00007fff354a0033 cvm_deferred_build_modular(void*) + 509 8 libdispatch.dylib 0x00007fff582fd63d _dispatch_client_callout + 8 9 libdispatch.dylib 0x00007fff583038e0 _dispatch_lane_serial_drain + 602 10 libdispatch.dylib 0x00007fff58304396 _dispatch_lane_invoke + 385 11 libdispatch.dylib 0x00007fff5830c6ed _dispatch_workloop_worker_thread + 598 12 libsystem_pthread.dylib 0x00007fff5853d611 _pthread_wqthread + 421 13 libsystem_pthread.dylib 0x00007fff5853d3fd start_wqthread + 13 Thread 24:: TaskSchedulerForegroundWorker 0 libsystem_kernel.dylib 0x00007fff5847f22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5847f76c mach_msg + 60 2 QtWebEngineCore 0x0000000117bc13ed 0x115a16000 + 35304429 3 QtWebEngineCore 0x0000000117bc14e1 0x115a16000 + 35304673 4 QtWebEngineCore 0x0000000117bd8de8 0x115a16000 + 35401192 5 QtWebEngineCore 0x0000000117bd947f 0x115a16000 + 35402879 6 QtWebEngineCore 0x0000000117bd9384 0x115a16000 + 35402628 7 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 8 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 25: 0 libsystem_pthread.dylib 0x00007fff5853d3f0 start_wqthread + 0 Thread 26:: TaskSchedulerForegroundBlockingWorker 0 libsystem_kernel.dylib 0x00007fff5847f22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5847f76c mach_msg + 60 2 QtWebEngineCore 0x0000000117bc13ed 0x115a16000 + 35304429 3 QtWebEngineCore 0x0000000117bc14e1 0x115a16000 + 35304673 4 QtWebEngineCore 0x0000000117bd8de8 0x115a16000 + 35401192 5 QtWebEngineCore 0x0000000117bd947f 0x115a16000 + 35402879 6 QtWebEngineCore 0x0000000117bd9384 0x115a16000 + 35402628 7 QtWebEngineCore 0x0000000117c307c7 0x115a16000 + 35760071 8 libsystem_pthread.dylib 0x00007fff5853e2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff58541249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5853d40d thread_start + 13 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x000000011211a5c0 rcx: 0x0000000107445a48 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x0000000107445a80 rsp: 0x0000000107445a48 r8: 0x0000000107445f48 r9: 0x508d5edb7415b792 r10: 0x000000011211a66c r11: 0x0000000000000287 r12: 0x0000000000000307 r13: 0x000000010640108b r14: 0x000000000000000b r15: 0x000000000000002d rip: 0x00007fff584852c6 rfl: 0x0000000000000286 cr2: 0x000000010721d124 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x106fcf000 - 0x106fcfffb +edu.ucsf.cgl.ChimeraX (0.91.0 - 0.91.0.0) 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/usr/lib/libgermantok.dylib 0x7fff55f03000 - 0x7fff55f08ff7 libheimdal-asn1.dylib (520.270.1) /usr/lib/libheimdal-asn1.dylib 0x7fff55f33000 - 0x7fff56023fff libiconv.2.dylib (51.200.6) /usr/lib/libiconv.2.dylib 0x7fff56024000 - 0x7fff56285ffb libicucore.A.dylib (62141.0.1) /usr/lib/libicucore.A.dylib 0x7fff562d2000 - 0x7fff562d3fff liblangid.dylib (128.15.1) /usr/lib/liblangid.dylib 0x7fff562d4000 - 0x7fff562ecff3 liblzma.5.dylib (10.200.3) /usr/lib/liblzma.5.dylib 0x7fff56304000 - 0x7fff563a8ff7 libmecab.1.0.0.dylib (779.24.1) /usr/lib/libmecab.1.0.0.dylib 0x7fff563a9000 - 0x7fff565adfff libmecabra.dylib (779.24.1) /usr/lib/libmecabra.dylib 0x7fff56785000 - 0x7fff56ad6ff7 libnetwork.dylib (1229.250.15) /usr/lib/libnetwork.dylib 0x7fff56b68000 - 0x7fff572edfdf libobjc.A.dylib (756.2) /usr/lib/libobjc.A.dylib 0x7fff572ee000 - 0x7fff572effff libodfde.dylib (24.50.1) /usr/lib/libodfde.dylib 0x7fff572ff000 - 0x7fff57303ffb libpam.2.dylib (22.200.1) /usr/lib/libpam.2.dylib 0x7fff57306000 - 0x7fff5733bfff libpcap.A.dylib (79.250.1) /usr/lib/libpcap.A.dylib 0x7fff57454000 - 0x7fff5746cffb libresolv.9.dylib (65.200.2) /usr/lib/libresolv.9.dylib 0x7fff5746e000 - 0x7fff574a9ff3 libsandbox.1.dylib (851.270.1) /usr/lib/libsandbox.1.dylib 0x7fff574aa000 - 0x7fff574bcff7 libsasl2.2.dylib (211) /usr/lib/libsasl2.2.dylib 0x7fff574bd000 - 0x7fff574beff7 libspindump.dylib (267.3) /usr/lib/libspindump.dylib 0x7fff574bf000 - 0x7fff5769cfff libsqlite3.dylib (274.26) /usr/lib/libsqlite3.dylib 0x7fff57760000 - 0x7fff5778ffff libssl.44.dylib (22.260.1) /usr/lib/libssl.44.dylib 0x7fff578b5000 - 0x7fff578b8ff7 libutil.dylib (51.200.4) /usr/lib/libutil.dylib 0x7fff578b9000 - 0x7fff578c6fff libxar.1.dylib (417.1) /usr/lib/libxar.1.dylib 0x7fff578cb000 - 0x7fff579adff3 libxml2.2.dylib (32.10) /usr/lib/libxml2.2.dylib 0x7fff579ae000 - 0x7fff579d6ff3 libxslt.1.dylib (16.5) /usr/lib/libxslt.1.dylib 0x7fff579d7000 - 0x7fff579e9ff7 libz.1.dylib (70.200.4) /usr/lib/libz.1.dylib 0x7fff581cd000 - 0x7fff581d1ff3 libcache.dylib (81) /usr/lib/system/libcache.dylib 0x7fff581d2000 - 0x7fff581dcff3 libcommonCrypto.dylib (60118.250.2) /usr/lib/system/libcommonCrypto.dylib 0x7fff581dd000 - 0x7fff581e4ff7 libcompiler_rt.dylib (63.4) /usr/lib/system/libcompiler_rt.dylib 0x7fff581e5000 - 0x7fff581eeff7 libcopyfile.dylib (146.250.1) /usr/lib/system/libcopyfile.dylib 0x7fff581ef000 - 0x7fff58273fc3 libcorecrypto.dylib (602.260.2) /usr/lib/system/libcorecrypto.dylib 0x7fff582fa000 - 0x7fff58333ff7 libdispatch.dylib (1008.270.1) /usr/lib/system/libdispatch.dylib 0x7fff58334000 - 0x7fff58360ff7 libdyld.dylib (655.1.1) /usr/lib/system/libdyld.dylib 0x7fff58361000 - 0x7fff58361ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib 0x7fff58362000 - 0x7fff5836eff3 libkxld.dylib (4903.270.47) /usr/lib/system/libkxld.dylib 0x7fff5836f000 - 0x7fff5836fff7 liblaunch.dylib (1336.261.2) /usr/lib/system/liblaunch.dylib 0x7fff58370000 - 0x7fff58375fff libmacho.dylib (927.0.3) /usr/lib/system/libmacho.dylib 0x7fff58376000 - 0x7fff58378ffb libquarantine.dylib (86.220.1) /usr/lib/system/libquarantine.dylib 0x7fff58379000 - 0x7fff5837aff7 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib 0x7fff5837b000 - 0x7fff58392ff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib 0x7fff58393000 - 0x7fff58393ff7 libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib 0x7fff58394000 - 0x7fff5841bfff libsystem_c.dylib (1272.250.1) /usr/lib/system/libsystem_c.dylib 0x7fff5841c000 - 0x7fff5841fffb libsystem_configuration.dylib (963.270.3) /usr/lib/system/libsystem_configuration.dylib 0x7fff58420000 - 0x7fff58423ff7 libsystem_coreservices.dylib (66) /usr/lib/system/libsystem_coreservices.dylib 0x7fff58424000 - 0x7fff5842afff libsystem_darwin.dylib (1272.250.1) /usr/lib/system/libsystem_darwin.dylib 0x7fff5842b000 - 0x7fff58431ff7 libsystem_dnssd.dylib (878.270.2) /usr/lib/system/libsystem_dnssd.dylib 0x7fff58432000 - 0x7fff5847dffb libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib 0x7fff5847e000 - 0x7fff584a6ff7 libsystem_kernel.dylib (4903.270.47) /usr/lib/system/libsystem_kernel.dylib 0x7fff584a7000 - 0x7fff584f2ff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib 0x7fff584f3000 - 0x7fff5851dfff libsystem_malloc.dylib (166.270.1) /usr/lib/system/libsystem_malloc.dylib 0x7fff5851e000 - 0x7fff58528ff7 libsystem_networkextension.dylib (767.250.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff58529000 - 0x7fff58530fff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib 0x7fff58531000 - 0x7fff5853afef libsystem_platform.dylib (177.270.1) /usr/lib/system/libsystem_platform.dylib 0x7fff5853b000 - 0x7fff58545ff7 libsystem_pthread.dylib (330.250.2) /usr/lib/system/libsystem_pthread.dylib 0x7fff58546000 - 0x7fff58549ff7 libsystem_sandbox.dylib (851.270.1) /usr/lib/system/libsystem_sandbox.dylib 0x7fff5854a000 - 0x7fff5854cff3 libsystem_secinit.dylib (30.260.2) /usr/lib/system/libsystem_secinit.dylib 0x7fff5854d000 - 0x7fff58554ff3 libsystem_symptoms.dylib (820.267.1) /usr/lib/system/libsystem_symptoms.dylib 0x7fff58555000 - 0x7fff5856afff libsystem_trace.dylib (906.260.1) /usr/lib/system/libsystem_trace.dylib 0x7fff5856c000 - 0x7fff58571ffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff58572000 - 0x7fff585a1fff libxpc.dylib (1336.261.2) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 7 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 41564 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=733.8M resident=0K(0%) swapped_out_or_unallocated=733.8M(100%) Writable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 384K 2 Activity Tracing 256K 1 CG backing stores 9532K 9 CG image 304K 34 CoreAnimation 512K 65 CoreGraphics 8K 1 CoreImage 132K 29 CoreUI image data 1652K 36 CoreUI image file 372K 7 Foundation 20K 2 Kernel Alloc Once 8K 1 MALLOC 563.7M 249 MALLOC guard page 32K 8 MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated) MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated) Memory Tag 242 12K 1 OpenGL GLSL 512K 6 PROTECTED_MEMORY 4K 1 STACK GUARD 104K 26 Stack 156.2M 27 Stack Guard 56.0M 1 VM_ALLOCATE 234.5M 210 VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated) __DATA 51.6M 512 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 241.4M 135 __TEXT 492.3M 488 __UNICODE 564K 1 mapped file 81.9M 72 shared memory 696K 19 =========== ======= ======= TOTAL 2.1G 1948 TOTAL, minus reserved VM space 1.9G 1948 Log: Startup Messages --- warnings | 'clip' is a prefix of an existing command 'clipper' 'rota' is a prefix of an existing command 'rotamers' UCSF ChimeraX version: 0.91 (2019-09-21) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/lynnettj/Documents/Grad School/Research/CryoEM/Modeling/plus3_displaced/Displaced_Global.mrc"" Opened Displaced_Global.mrc, grid size 256,256,256, pixel 1.06, shown at level 0.0116, step 1, values float32 OpenGL version: 4.1 INTEL-12.10.12 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655 OpenGL vendor: Intel Inc. }}} " defect closed normal Input/Output duplicate Tom Goddard all ChimeraX