id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2398 2D label fading broken papai@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Darwin-18.6.0-x86_64-i386-64bit ChimeraX Version: 0.91 (2019-09-03) Description I used the command: 2dlabels #3.1 visibility false frames 20 This command worked without the frames option. Log: UCSF ChimeraX version: 0.91 (2019-09-03) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Volumes/GABOR-YAN/oct-comp.cxs opened ChimeraX session > view list Named views: sep, side, spt, tog > 2dlabels text Nucleosome size 30 font helvetica bold true > ui mousemode rightMode ""move label"" > 2dlabels #3.1 xpos 0.173 ypos 0.913 > 2dlabels text ""SAGA histone-fold octamer"" size 30 font helvetica bold true > 2dlabels #3.2 xpos 0.547 ypos 0.905 > 2dlabels #3.1 visibility false frames 20 Traceback (most recent call last): File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/motion.py"", line 38, in __call__ self.func(self.session, f) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/label/label2d.py"", line 217, in frame_cb self.label.color[-1] = self.label.color.dtype.type(self.color1[-1] * (1 - fraction)) AttributeError: 'NoneType' object has no attribute 'dtype' Error processing trigger ""new frame"": AttributeError: 'NoneType' object has no attribute 'dtype' File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/label/label2d.py"", line 217, in frame_cb self.label.color[-1] = self.label.color.dtype.type(self.color1[-1] * (1 - fraction)) See log for complete Python traceback. Failed to send bug report. Error while sending follows: Traceback (most recent call last): File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/bug_reporter/bug_reporter_gui.py"", line 231, in submit errcode, errmsg, headers, body = post_multipart_formdata(BUG_HOST, BUG_SELECTOR, fields) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/webservices/post_form.py"", line 37, in post_multipart_formdata h.request('POST', url, body=body, headers={'Content-type': content_type}) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1244, in request self._send_request(method, url, body, headers, encode_chunked) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1290, in _send_request self.endheaders(body, encode_chunked=encode_chunked) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1239, in endheaders self._send_output(message_body, encode_chunked=encode_chunked) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1026, in _send_output self.send(msg) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 966, in send self.connect() File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 938, in connect (self.host,self.port), self.timeout, self.source_address) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/socket.py"", line 707, in create_connection for res in getaddrinfo(host, port, 0, SOCK_STREAM): File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/socket.py"", line 748, in getaddrinfo for res in _socket.getaddrinfo(host, port, family, type, proto, flags): socket.gaierror: [Errno 8] nodename nor servname provided, or not known Failed to send bug report. Error while sending follows: Traceback (most recent call last): File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/bug_reporter/bug_reporter_gui.py"", line 231, in submit errcode, errmsg, headers, body = post_multipart_formdata(BUG_HOST, BUG_SELECTOR, fields) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/webservices/post_form.py"", line 37, in post_multipart_formdata h.request('POST', url, body=body, headers={'Content-type': content_type}) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1244, in request self._send_request(method, url, body, headers, encode_chunked) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1290, in _send_request self.endheaders(body, encode_chunked=encode_chunked) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1239, in endheaders self._send_output(message_body, encode_chunked=encode_chunked) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1026, in _send_output self.send(msg) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 966, in send self.connect() File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 938, in connect (self.host,self.port), self.timeout, self.source_address) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/socket.py"", line 707, in create_connection for res in getaddrinfo(host, port, 0, SOCK_STREAM): File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/socket.py"", line 748, in getaddrinfo for res in _socket.getaddrinfo(host, port, family, type, proto, flags): socket.gaierror: [Errno 8] nodename nor servname provided, or not known > 2dlabels #3.1 visibility false frames 20 Traceback (most recent call last): File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/motion.py"", line 38, in __call__ self.func(self.session, f) File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/label/label2d.py"", line 217, in frame_cb self.label.color[-1] = self.label.color.dtype.type(self.color1[-1] * (1 - fraction)) AttributeError: 'NoneType' object has no attribute 'dtype' Error processing trigger ""new frame"": AttributeError: 'NoneType' object has no attribute 'dtype' File ""/Users/papai/software/Chimera/ChimeraX_Daily-040919.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/label/label2d.py"", line 217, in frame_cb self.label.color[-1] = self.label.color.dtype.type(self.color1[-1] * (1 - fraction)) See log for complete Python traceback. OpenGL version: 4.1 INTEL-12.9.22 OpenGL renderer: Intel Iris OpenGL Engine OpenGL vendor: Intel Inc. }}} " defect closed normal Graphics duplicate all ChimeraX