id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
2391	Surface cap not colored	susan.lea@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-09-07)
Description
I'm trying to have a cut through of a molecular surface where the color is applied to the capping surface - this seemed to work for a while but now the cap is always grey - assuming I've managed to turn on/off some option - but cannot identify what it is

Log:
UCSF ChimeraX version: 0.91 (2019-09-07)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open ""/Users/smlea/Nexus365/Pathology Dunn School - SMLLAB -
Documents/Documents/MotAB/models_and_maps/gld-on-csp-by-outer-helices.pdb""
""/Users/smlea/Nexus365/Pathology Dunn School - SMLLAB -
Documents/Documents/MotAB/models_and_maps/5sv1_on_cspor-by-helices.pdb""
""/Users/smlea/Nexus365/Pathology Dunn School - SMLLAB -
Documents/Documents/MotAB/models_and_maps/bsub-on-cspor-by-outer-helices.pdb""
""/Users/smlea/Nexus365/Pathology Dunn School - SMLLAB -
Documents/Documents/MotAB/models_and_maps/cspor_motAB_may13_2plug_relabel.pdb""

  
  
  
  
Chain information for gld-on-csp-by-outer-helices.pdb #1.1  
---  
Chain | Description  
A | No description available  
B | No description available  
C D E F G | No description available  
  
Chain information for 5sv1_on_cspor-by-helices.pdb #1.2  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
  
Chain information for bsub-on-cspor-by-outer-helices.pdb #1.3  
---  
Chain | Description  
A B | No description available  
C F G | No description available  
D E | No description available  
  
Chain information for cspor_motAB_may13_2plug_relabel.pdb #1.4  
---  
Chain | Description  
A B | No description available  
C D E G | No description available  
F | No description available  
  

> hide atoms

> show cartoons

> set bgColor white

> color #1.1 silver

> camera ortho

Unknown command: GldL 6-29 & 39-57  

Unknown command: GldM 7-28  

> color #1/A grey

> color #1/B darkgrey

> color #1/C salmon

> color #1/E ""dark sea green""

> color #1/D steelblue

> color #1/F teal

> color #1/G burlywood

> color #1.1 silver

> surface enclose #1.1/C-G:6-29,39-57

> color #1.1/A:7-26 grey

> color #1.1/B:7-26 darkgrey

> color #1.1/C:6-29,39-57 salmon

> color #1.1/E:6-29,39-57 ""dark sea green""

> color #1.1/D:6-29,39-57 steelblue

> color #1.1/F:6-29,39-57 teal

> color #1.1/G:6-29,39-57 burlywood

> hide #!1.2 models

> hide #!1.3 models

> hide #!1.4 models

> toolshed show ""Side View""




OpenGL version: 4.1 ATI-1.68.22
OpenGL renderer: AMD Radeon Pro 560X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

}}}
"	defect	closed	normal		Surface		not a bug		Elaine Meng				all	ChimeraX