id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2389 "Graphics buffer deletion problem for ""split"" after ""surface""" Elaine Meng Tom Goddard "{{{ The following bug report has been submitted: Platform: Darwin-18.7.0-x86_64-i386-64bit ChimeraX Version: 0.91 (2019-09-03) Description error using ""split"" after ""surface"" open 1zik surf split Log: Startup Messages --- warning | 'clip' is a prefix of an existing command 'clipper' > open startup.cxc > alias reset view orient; view initial > alias vmc view selAtoms|selMaps; cofr front > alias toggle sel ##display; hide sel models; show ~sel models; ~sel > alias stoggle sel ##display; hide sel & $1 models; show ~sel & $1 models; ~sel executed startup.cxc UCSF ChimeraX version: 0.91 (2019-09-03) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 6h6b format mmCIF fromDatabase pdb 6h6b title: Structure of alpha-synuclein fibrils [more info...] Chain information for 6h6b #1 --- Chain | Description A B C D E F G H I J | Alpha-synuclein > split Chain information for 6h6b A #1.1 --- Chain | Description A | No description available Chain information for 6h6b B #1.2 --- Chain | Description B | No description available Chain information for 6h6b C #1.3 --- Chain | Description C | No description available Chain information for 6h6b D #1.4 --- Chain | Description D | No description available Chain information for 6h6b E #1.5 --- Chain | Description E | No description available Chain information for 6h6b F #1.6 --- Chain | Description F | No description available Chain information for 6h6b G #1.7 --- Chain | Description G | No description available Chain information for 6h6b H #1.8 --- Chain | Description H | No description available Chain information for 6h6b I #1.9 --- Chain | Description I | No description available Chain information for 6h6b J #1.10 --- Chain | Description J | No description available Split 6h6b (#1) into 10 models > close > open 6h6b format mmCIF fromDatabase pdb 6h6b title: Structure of alpha-synuclein fibrils [more info...] Chain information for 6h6b #1 --- Chain | Description A B C D E F G H I J | Alpha-synuclein > surface > split Chain information for 6h6b A #1.1 --- Chain | Description A | No description available Chain information for 6h6b B #1.2 --- Chain | Description B | No description available Chain information for 6h6b C #1.3 --- Chain | Description C | No description available Chain information for 6h6b D #1.4 --- Chain | Description D | No description available Chain information for 6h6b E #1.5 --- Chain | Description E | No description available Chain information for 6h6b F #1.6 --- Chain | Description F | No description available Chain information for 6h6b G #1.7 --- Chain | Description G | No description available Chain information for 6h6b H #1.8 --- Chain | Description H | No description available Chain information for 6h6b I #1.9 --- Chain | Description I | No description available Chain information for 6h6b J #1.10 --- Chain | Description J | No description available Split 6h6b (#1) into 10 models Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""vcolor"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_placement"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_shift_and_scale"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""vcolor"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_placement"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_shift_and_scale"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""vcolor"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_placement"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_shift_and_scale"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""vcolor"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_placement"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_shift_and_scale"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""vcolor"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_placement"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_shift_and_scale"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""vcolor"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_placement"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_shift_and_scale"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""vcolor"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_placement"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_shift_and_scale"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""vcolor"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_placement"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_shift_and_scale"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""vcolor"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_placement"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_shift_and_scale"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""vcolor"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_placement"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_shift_and_scale"" was not deleted before core.graphics.Buffer destroyed > version UCSF ChimeraX version: 0.91 (2019-09-03) © 2016-2019 Regents of the University of California. All rights reserved. > close > open 1zik 1zik title: GCN4-leucine zipper core mutant ASN16LYS In the dimeric state [more info...] Chain information for 1zik #1 --- Chain | Description A B | general control protein GCN4 > surface > split Chain information for 1zik A #1.1 --- Chain | Description A | No description available Chain information for 1zik B #1.2 --- Chain | Description B | No description available Split 1zik (#1) into 2 models Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""vcolor"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_placement"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_shift_and_scale"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""vcolor"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_placement"" was not deleted before core.graphics.Buffer destroyed Exception ignored in: Traceback (most recent call last): File ""/Users/meng/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2460, in __del__ % self.shader_variable_name) chimerax.core.graphics.opengl.OpenGLError: OpenGL buffer ""instance_shift_and_scale"" was not deleted before core.graphics.Buffer destroyed OpenGL version: 4.1 INTEL-12.10.12 OpenGL renderer: Intel Iris Pro OpenGL Engine OpenGL vendor: Intel Inc. }}} " defect closed normal Graphics duplicate all ChimeraX