id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
2194	no 'self' in restore_snapshot	kelvin.lau@…	Eric Pettersen	"{{{
The following bug report has been submitted:
Platform:        Darwin-18.6.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-07-07)
Description
tried to open session

Log:
UCSF ChimeraX version: 0.91 (2019-07-07)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open ""/Users/kelvinlau/Desktop/ralf dock model.cxs"" format session

Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File
""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/session.py"", line 629, in restore  
obj = sm.restore_snapshot(self, data)  
File
""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/seqalign/alignment.py"", line 540, in restore_snapshot  
match_map.mod_handler = match_map.triggers.add_handler('modified',
self._mmap_mod_cb)  
NameError: name 'self' is not defined  
  
opened ChimeraX session  

> open /Users/kelvinlau/Desktop/HOP2.pdb

Summary of feedback from opening /Users/kelvinlau/Desktop/HOP2.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK Date 2018-11-29 Time 22:41:04 CET +0100 (1543527664.81 s)  
  
Ignored bad PDB record found on line 2  
REMARK PHENIX refinement  
  
Ignored bad PDB record found on line 4  
REMARK ****************** INPUT FILES AND LABELS
******************************  
  
Ignored bad PDB record found on line 5  
REMARK Reflections:  
  
Ignored bad PDB record found on line 6  
REMARK file name : 76_aimless32.mtz  
  
27 messages similar to the above omitted  
Cannot find LINK/SSBOND residue MAN (2099 )  
Cannot find LINK/SSBOND residue MAN (2221 )  
Cannot find LINK/SSBOND residue MAN (2229 )  
Cannot find LINK/SSBOND residue MAN (2220 )  
Cannot find LINK/SSBOND residue NAG (1109 )  
102 messages similar to the above omitted  
  
Chain information for HOP2.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open ""/Users/kelvinlau/Desktop/ralf dock model.cxs""

Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File
""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/session.py"", line 629, in restore  
obj = sm.restore_snapshot(self, data)  
File
""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/seqalign/alignment.py"", line 540, in restore_snapshot  
match_map.mod_handler = match_map.triggers.add_handler('modified',
self._mmap_mod_cb)  
NameError: name 'self' is not defined  
  
opened ChimeraX session  




OpenGL version: 4.1 INTEL-12.9.22
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.
File attachment: ralf dock model.cxs

}}}

[attachment:""ralf dock model.cxs""]
"	defect	closed	normal		Sessions		fixed						all	ChimeraX