id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 20852 ChimeraX bug report submission chimerax-bug-report@… "{{{ The following bug report has been submitted: Platform: Linux-7.0.0-28-generic-x86_64-with-glibc2.39 ChimeraX Version: 1.12 (2026-06-12 03:42:34 UTC) Description Replace this text with list of actions that caused this problem to occur Log: Startup Messages --- warning | GBM is not supported with the current configuration. Fallback to Vulkan rendering in Chromium. UCSF ChimeraX version: 1.12 (2026-06-12) © 2016-2026 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Juli/antibody/CD19_Human/Affinity_Maturation/simulation/combo/simulation/T440S/Heat- > Prod/Replicate1/cd19_mt-50ns.pdb Chain information for cd19_mt-50ns.pdb #1 --- Chain | Description ? | No description available Computing secondary structure > open > /Juli/antibody/CD19_Human/Affinity_Maturation/simulation/combo/simulation/T440S/Heat- > Prod/Replicate1/cd19_mt-100ns.pdb Chain information for cd19_mt-100ns.pdb #2 --- Chain | Description ? | No description available > open > /Juli/antibody/CD19_Human/Affinity_Maturation/simulation/combo/simulation/T440S/Heat- > Prod/Replicate1/cd19_mt-150ns.pdb Chain information for cd19_mt-150ns.pdb #3 --- Chain | Description ? | No description available > open > /Juli/antibody/CD19_Human/Affinity_Maturation/simulation/combo/simulation/T440S/Heat- > Prod/Replicate1/cd19_mt-200ns.pdb Chain information for cd19_mt-200ns.pdb #4 --- Chain | Description ? | No description available Computing secondary structure [Repeated 2 time(s)] > open > /Juli/antibody/CD19_Human/Affinity_Maturation/simulation/combo/simulation/T440S/Heat- > Prod/Replicate2/cd19_mt-50ns.pdb Chain information for cd19_mt-50ns.pdb #5 --- Chain | Description ? | No description available Computing secondary structure > open > /Juli/antibody/CD19_Human/Affinity_Maturation/simulation/combo/simulation/T440S/Heat- > Prod/Replicate2/cd19_mt-100ns.pdb Chain information for cd19_mt-100ns.pdb #6 --- Chain | Description ? | No description available Computing secondary structure > open > /Juli/antibody/CD19_Human/Affinity_Maturation/simulation/combo/simulation/T440S/Heat- > Prod/Replicate2/cd19_mt-150ns.pdb Chain information for cd19_mt-150ns.pdb #7 --- Chain | Description ? | No description available Computing secondary structure > open > /Juli/antibody/CD19_Human/Affinity_Maturation/simulation/combo/simulation/T440S/Heat- > Prod/Replicate2/cd19_mt-200ns.pdb Chain information for cd19_mt-200ns.pdb #8 --- Chain | Description ? | No description available Computing secondary structure > show surfaces > sequence chain #1/?#2/?#3/?#4/?#5/?#6/?#7/?#8/? Alignment identifier is 1 > lighting full > set bgColor white > lighting simple > lighting full > lighting soft > lighting full > save > /Juli/antibody/CD19_Human/Affinity_Maturation/simulation/combo/simulation/T440S/images/rep2_3_cd19_human.cxs > select #1/*:1 #2/*:1 #3/*:1 #4/*:1 #5/*:1 #6/*:1 #7/*:1 #8/*:1 48 atoms, 40 bonds, 8 residues, 8 models selected > select #1/*:1-225 #2/*:1-225 #3/*:1-225 #4/*:1-225 #5/*:1-225 #6/*:1-225 > #7/*:1-225 #8/*:1-225 27328 atoms, 27752 bonds, 1800 residues, 8 models selected 1 [ID: 1] region 8 chains [1-225] RMSD: 4.018 > select #1/*:1 #2/*:1 #3/*:1 #4/*:1 #5/*:1 #6/*:1 #7/*:1 #8/*:1 48 atoms, 40 bonds, 8 residues, 8 models selected > select #1/*:1-259 #2/*:1-259 #3/*:1-259 #4/*:1-259 #5/*:1-259 #6/*:1-259 > #7/*:1-259 #8/*:1-259 31512 atoms, 31984 bonds, 2072 residues, 8 models selected 1 [ID: 1] region 8 chains [1-259] RMSD: 4.019 > color (#!1-8 & sel) #4063bfff > color (#!1-8 & sel) #9aa4bfff > color (#!1-8 & sel) #5b6171ff [Repeated 3 time(s)] > transparency (#!1-8 & sel) 70 > color (#!1-8 & sel) #4063bfff > color (#!1-8 & sel) #99a4bfff > color (#!1-8 & sel) #747c91ff [Repeated 3 time(s)] > transparency (#!1-8 & sel) 80 > select #1/*:260 #2/*:260 #3/*:260 #4/*:260 #5/*:260 #6/*:260 #7/*:260 > #8/*:260 48 atoms, 40 bonds, 8 residues, 8 models selected > select #1/*:260-368 #2/*:260-368 #3/*:260-368 #4/*:260-368 #5/*:260-368 > #6/*:260-368 #7/*:260-368 #8/*:260-368 13000 atoms, 13152 bonds, 872 residues, 8 models selected 1 [ID: 1] region 8 chains [260-368] RMSD: 2.867 > color (#!1-8 & sel) #4094bfff > color (#!1-8 & sel) #238abfff > color (#!1-8 & sel) #134c69ff [Repeated 3 time(s)] > transparency (#!1-8 & sel) 70 > select #1/*:369 #2/*:369 #3/*:369 #4/*:369 #5/*:369 #6/*:369 #7/*:369 > #8/*:369 56 atoms, 48 bonds, 8 residues, 8 models selected > select #1/*:369-386 #2/*:369-386 #3/*:369-386 #4/*:369-386 #5/*:369-386 > #6/*:369-386 #7/*:369-386 #8/*:369-386 1640 atoms, 1640 bonds, 144 residues, 8 models selected 1 [ID: 1] region 8 chains [369-386] RMSD: 9.174 > color (#!1-8 & sel) #bf4081ff > color (#!1-8 & sel) #bf3d80ff > color (#!1-8 & sel) #842a58ff [Repeated 3 time(s)] > color (#!1-8 & sel) #8e2d5fff [Repeated 3 time(s)] > transparency (#!1-8 & sel) 80 > select #1/*:387 #2/*:387 #3/*:387 #4/*:387 #5/*:387 #6/*:387 #7/*:387 > #8/*:387 136 atoms, 128 bonds, 8 residues, 8 models selected > select #1/*:387-506 #2/*:387-506 #3/*:387-506 #4/*:387-506 #5/*:387-506 > #6/*:387-506 #7/*:387-506 #8/*:387-506 14072 atoms, 14224 bonds, 960 residues, 8 models selected 1 [ID: 1] region 8 chains [387-506] RMSD: 3.617 > color (#!1-8 & sel) #40bfb1ff > color (#!1-8 & sel) #2abfaeff > color (#!1-8 & sel) #16655cff [Repeated 3 time(s)] > transparency (#!1-8 & sel) 70 > select clear Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/core/updateloop.py"", line 150, in _redraw_timer_callback drew = self.draw_new_frame() ^^^^^^^^^^^^^^^^^^^^^ File ""/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/core/updateloop.py"", line 76, in draw_new_frame changed = view.check_for_drawing_change() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/graphics/view.py"", line 294, in check_for_drawing_change trig.activate_trigger('graphics update', self) File ""/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/core/triggerset.py"", line 388, in activate_trigger trigger = self._triggers[name] ~~~~~~~~~~~~~~^^^^^^ KeyError: None KeyError: None File ""/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/core/triggerset.py"", line 388, in activate_trigger trigger = self._triggers[name] ~~~~~~~~~~~~~~^^^^^^ See log for complete Python traceback. Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/core/updateloop.py"", line 150, in _redraw_timer_callback drew = self.draw_new_frame() ^^^^^^^^^^^^^^^^^^^^^ File ""/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/core/updateloop.py"", line 69, in draw_new_frame atomic.check_for_changes(session) File ""/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/atomic/changes.py"", line 31, in check_for_changes if not ct or not ct.changed: ^^^^^^^^^^ File ""/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/atomic/molobject.py"", line 2290, in changed f = c_function('change_tracker_changed', args = (ctypes.c_void_p,), ret = ctypes.c_bool) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/atomic/molc.py"", line 48, in c_function if args is not None and f.argtypes is None: ^ UnboundLocalError: cannot access local variable 'f' where it is not associated with a value UnboundLocalError: cannot access local variable 'f' where it is not associated with a value File ""/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/atomic/molc.py"", line 48, in c_function if args is not None and f.argtypes is None: ^ See log for complete Python traceback. Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/core/updateloop.py"", line 150, in _redraw_timer_callback drew = self.draw_new_frame() ^^^^^^^^^^^^^^^^^^^^^ File ""/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/core/updateloop.py"", line 60, in draw_new_frame view = session.main_view ^^^^^^^^^^^^^^^^^ AttributeError: 'Session' object has no attribute '_block_redraw_count' AttributeError: 'Session' object has no attribute '_block_redraw_count' File ""/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/core/updateloop.py"", line 60, in draw_new_frame view = session.main_view ^^^^^^^^^^^^^^^^^ See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 595.84 OpenGL renderer: NVIDIA GeForce RTX 5090/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.11.13 Locale: en_US.UTF-8 Qt version: PyQt6 6.10.2, Qt 6.10.0 Qt runtime version: 6.10.2 Qt platform: xcb XDG_SESSION_TYPE=x11 DESKTOP_SESSION=ubuntu XDG_SESSION_DESKTOP=ubuntu XDG_CURRENT_DESKTOP=ubuntu:GNOME DISPLAY=:1 Manufacturer: Micro-Star International Co., Ltd. Model: MS-7E06 OS: Ubuntu 24.04 Architecture: 64bit ELF Virtual Machine: none CPU: 32 Intel(R) Core(TM) i9-14900K Cache Size: 36864 KB Memory: total used free shared buff/cache available Mem: 125Gi 10Gi 30Gi 481Mi 85Gi 114Gi Swap: 8.0Gi 281Mi 7.7Gi Graphics: 01:00.0 VGA compatible controller [0300]: NVIDIA Corporation Device [10de:2b85] (rev a1) Subsystem: ASUSTeK Computer Inc. Device [1043:89ee] Kernel driver in use: nvidia Installed Packages: accessible-pygments: 0.0.5 aiohappyeyeballs: 2.6.2 aiohttp: 3.13.4 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.13.0 appdirs: 1.4.4 asttokens: 3.0.1 attrs: 26.1.0 babel: 2.18.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 4.4.3 bs4: 0.0.2 build: 1.3.0 certifi: 2026.5.20 cftime: 1.6.5 charset-normalizer: 3.4.7 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.2 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.67.1 ChimeraX-AtomicLibrary: 14.4 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4.1 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.4 ChimeraX-Cluster: 1.0 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.1 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.12 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.2.2 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.8.2 ChimeraX-Label: 1.5 ChimeraX-LightingGUI: 1.0 ChimeraX-LinuxSupport: 1.0.1 ChimeraX-ListInfo: 1.3.1 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.3 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchAlign: 1.2 ChimeraX-MatchMaker: 2.4.1 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.2.0 ChimeraX-MDcrds: 2.19 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.9 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.23 ChimeraX-ModelPanel: 1.6.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.4 ChimeraX-OpenFold: 1.0 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.13 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.6 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.8.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.12 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.18 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SNFG: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.4 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.50.8 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.6.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.4.1 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.14.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.2.4 debugpy: 1.8.21 decorator: 5.3.1 distro: 1.9.0 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.63.0 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.16.0 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.18 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 2.0.0 iniconfig: 2.3.0 ipykernel: 7.1.0 ipython: 9.9.0 ipython_pygments_lexers: 1.1.1 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.8.0 jupyter_core: 5.9.1 kiwisolver: 1.5.0 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.2 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.1 narwhals: 2.22.1 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 nvidia-nvjitlink-cu12: 12.9.86 OpenMM: 8.4.0 OpenMM-CUDA-12: 8.4.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.7 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.10.0 plotly: 6.8.0 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.5.2 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.13.4 pydantic-settings: 2.14.1 pydantic_core: 2.46.4 pydata-sphinx-theme: 0.18.0 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.5.1 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6: 6.10.2 PyQt6-Qt6: 6.10.2 PyQt6-WebEngine: 6.10.0 PyQt6-WebEngine-Qt6: 6.10.2 PyQt6_sip: 13.10.3 pytest: 9.0.3 pytest-cov: 7.1.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.2 python-multipart: 0.0.32 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 rpds-py: 2026.5.1 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.1.1 sortedcontainers: 2.4.0 soupsieve: 2.8.4 Sphinx: 9.0.4 sphinx-autodoc-typehints: 3.6.1 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.4.4 stack-data: 0.6.3 starlette: 1.3.0 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 3.2.1 threadpoolctl: 3.6.0 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.7 tqdm: 4.68.2 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 Unidecode: 1.4.0 urllib3: 2.7.0 uvicorn: 0.49.0 wcwidth: 0.8.1 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 yarl: 1.24.2 }}} " defect new normal Unassigned