id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 19475 Crash in swap_buffers exposing status line during Mac wakeup chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-26.1-arm64-arm-64bit ChimeraX Version: 1.10.1 (2025-07-24 20:15:27 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Current thread 0x0000000207256080 (most recent call first): File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 248 in swap_buffers File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 561 in swap_buffers File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 166 in status File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 98 in _expose_event File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 122 in make_current File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 555 in make_current File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 584 in use_shared_context File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/sideview/tool.py"", line 143 in render File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/sideview/tool.py"", line 113 in _redraw File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 149 in invoke File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 248 in _activate File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 217 in activate File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 393 in activate_trigger File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 100 in draw_new_frame File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 169 in update_graphics_now File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/graphics.py"", line 153 in resizeEvent File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/graphics.py"", line 61 in event File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 368 in event_loop File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1057 in init File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1220 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, 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resident=0K(0%) swapped_out_or_unallocated=1.9G(100%)\nWritable regions: Total=2.7G written=121.0M(4%) resident=2163K(0%) swapped_out=118.9M(4%) unallocated=2.6G(96%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nAttributeGraph Data 1024K 1 \nCG image 480K 17 \nColorSync 160K 10 \nCoreAnimation 6960K 165 \nCoreGraphics 48K 3 \nCoreServices 624K 2 \nCoreUI image data 1408K 20 \nFoundation 32K 2 \nKernel Alloc Once 32K 1 \nMALLOC 2.0G 270 \nMALLOC guard page 3728K 4 \nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 832K 52 \nStack 207.8M 53 \nStack Guard 56.0M 1 \nVM_ALLOCATE 302.0M 296 \nVM_ALLOCATE (reserved) 192.0M 1 reserved VM address space (unallocated)\n__AUTH 5878K 653 \n__AUTH_CONST 89.8M 1042 \n__CTF 824 1 \n__DATA 41.5M 1143 \n__DATA_CONST 42.9M 1189 \n__DATA_DIRTY 8820K 902 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 622.2M 143 \n__OBJC_RO 78.3M 1 \n__OBJC_RW 2567K 1 \n__TEXT 1.3G 1187 \n__TEXT (graphics) 202.3M 25 \n__TPRO_CONST 128K 2 \ndyld private memory 1968K 17 \nmapped file 647.2M 84 \npage table in kernel 2163K 1 \nshared memory 3248K 30 \n=========== ======= ======= \nTOTAL 5.7G 7332 \nTOTAL, minus reserved VM space 5.6G 7332 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""d11f5e591488f735eebb3928d56dba91502b4cdc"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""67181b10c68c361a728c7cfa"", ""factorPackIds"" : [ ], ""deploymentId"" : 240000005 }, { ""rolloutId"" : ""654439cdafbf5b61207873a9"", ""factorPackIds"" : [ ], ""deploymentId"" : 240000004 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.10.1 (2025-07-24) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/L061961/Library/CloudStorage/OneDrive- > EliLillyandCompany/Documents/Projects/SLC15A4/Structures/SLC15A4+4576270/cryosparc_P412_J3810_004_volume_map.mrc Opened cryosparc_P412_J3810_004_volume_map.mrc as #1, grid size 360,360,360, pixel 0.73, shown at level 0.0172, step 2, values float32 > volume #1 step 1 > volume #1 level 0.07367 > open /Users/L061961/Library/CloudStorage/OneDrive- > EliLillyandCompany/Documents/Projects/SLC15A4/Structures/SLC15A4+4576270/SLC15A4_4576270_fit_J3810.pdb Chain information for SLC15A4_4576270_fit_J3810.pdb #2 --- Chain | Description A B | No description available Computing secondary structure > transparency 70 > open /Users/L061961/Library/CloudStorage/OneDrive- > EliLillyandCompany/Documents/Projects/SLC15A4/Structures/SLC15A4+4576270/cryosparc_P412_J3811_map_sharp.mrc Opened cryosparc_P412_J3811_map_sharp.mrc as #3, grid size 360,360,360, pixel 0.73, shown at level 4.17e-05, step 2, values float32 > volume #3 step 1 > volume #3 level 0.2786 > volume #3 level 0.2171 > transparency 70 > select /a 7629 atoms, 7726 bonds, 2 pseudobonds, 495 residues, 2 models selected > ui tool show ""Color Actions"" > color sel cornflower blue > select /b 7629 atoms, 7726 bonds, 2 pseudobonds, 495 residues, 2 models selected > color sel light blue > ui tool show ""Color Actions"" > color sel byhetero > select clear > color byhetero > set bgColor white > graphics silhouettes true > lighting soft > ui tool show ""Side View"" > select /b 7629 atoms, 7726 bonds, 2 pseudobonds, 495 residues, 2 models selected > ui tool show ""Measure Volume and Area"" > ui tool show ""Color Zone"" > color zone #1 near #2 distance 3 > select /b 7629 atoms, 7726 bonds, 2 pseudobonds, 495 residues, 2 models selected > color sel light blue > select /a 7629 atoms, 7726 bonds, 2 pseudobonds, 495 residues, 2 models selected > color sel cornflower blue > color zone #1 near #2 distance 3 > select clear > hide #!2 models > show #!2 models > hide #!2 models > hide #!1 models > show #!1 models Cell requested for row 0 is out of bounds for table with 4 rows! Resizing table model. > hide #1.1 models > show #1.1 models > hide #!1 models > show #!1 models > select /a 7629 atoms, 7726 bonds, 2 pseudobonds, 495 residues, 2 models selected > color zone #1 near #2 distance 3 > volume splitbyzone #1 Opened cryosparc_P412_J3810_004_volume_map.mrc 0 as #4.1, grid size 360,360,360, pixel 0.73, shown at level 0.0737, step 1, values float32 Opened cryosparc_P412_J3810_004_volume_map.mrc 1 as #4.2, grid size 360,360,360, pixel 0.73, shown at level 0.0737, step 1, values float32 Opened cryosparc_P412_J3810_004_volume_map.mrc 2 as #4.3, grid size 360,360,360, pixel 0.73, shown at level 0.0737, step 1, values float32 > select /b 7629 atoms, 7726 bonds, 2 pseudobonds, 495 residues, 2 models selected > color zone #1 near #2 distance 3 > volume splitbyzone #1 Opened cryosparc_P412_J3810_004_volume_map.mrc 0 as #5.1, grid size 360,360,360, pixel 0.73, shown at level 0.0737, step 1, values float32 Opened cryosparc_P412_J3810_004_volume_map.mrc 1 as #5.2, grid size 360,360,360, pixel 0.73, shown at level 0.0737, step 1, values float32 Opened cryosparc_P412_J3810_004_volume_map.mrc 2 as #5.3, grid size 360,360,360, pixel 0.73, shown at level 0.0737, step 1, values float32 > hide #!4.3 models > hide #!4.2 models > hide #!4.1 models > hide #!5 models > hide #!5.1 models > hide #!5.2 models > hide #!5.3 models > hide #!4 models > show #!5 models > show #!5.2 models > hide #!5.2 models > hide #!5 models > show #!4.1 models > hide #!4 models > hide #!4.1 models > show #!4.1 models > hide #!4 models > show #!4 models > hide #!4.1 models > show #!4.1 models > surface dust #4.1 size 7.3 > show #!4.2 models > show #!4.3 models > transparency 0 > surface dust #4.1 size 7.3 > surface dust #4.2 size 7.3 > surface dust #4.3 size 7.3 > volume #4.3 level 0.04352 > volume #4.2 level 0.0429 > volume #5.1 level 0.07724 > volume #5.1 level 0.06892 > hide #!5.1 models > volume #5.1 level 0.07288 > hide #!5.1 models > hide #!4.1 models > show #!4.1 models > close #5 > volume #4.1 level 0.05149 > volume #4.2 level 0.04659 > show #!1 models > hide #!1 models > show #!2 models > volume #4.3 level 0.03613 > volume #4.2 level 0.03859 > volume #4.3 level 0.03798 > volume #4.2 level 0.04413 > volume #4.3 level 0.04413 > hide #!2 models > volume #4.3 level 0.0589 > volume #4.2 level 0.05275 > volume #4.3 level 0.05398 > save /Users/L061961/Library/CloudStorage/OneDrive- > EliLillyandCompany/Documents/Projects/SLC15A4/Structures/SLC15A4+4576270/chimera/overall.cxs > save /Users/L061961/Library/CloudStorage/OneDrive- > EliLillyandCompany/Documents/Projects/SLC15A4/Structures/SLC15A4+4576270/chimera/side_overall.png > width 1303 height 1114 supersample 3 transparentBackground true > show #!4.1 models > save /Users/L061961/Library/CloudStorage/OneDrive- > EliLillyandCompany/Documents/Projects/SLC15A4/Structures/SLC15A4+4576270/chimera/side_overall_cholestrol.png > width 1303 height 1114 supersample 3 transparentBackground true > show #!1 models > transparency 70 > show #!2 models > select add #2 15258 atoms, 15452 bonds, 4 pseudobonds, 990 residues, 2 models selected > color sel byhetero > select subtract #2 Nothing selected > ui tool show ""Side View"" > select ::name=""LIG"" 122 atoms, 128 bonds, 2 residues, 1 model selected > select clear > select add #2 15258 atoms, 15452 bonds, 4 pseudobonds, 990 residues, 2 models selected > select subtract #2 Nothing selected > select /b 7629 atoms, 7726 bonds, 2 pseudobonds, 495 residues, 2 models selected > color sel light blue > select /a 7629 atoms, 7726 bonds, 2 pseudobonds, 495 residues, 2 models selected > color sel royal blue > color sel cornflower blue > select ::name=""LIG"" 122 atoms, 128 bonds, 2 residues, 1 model selected > color sel gold > color zone #1 near #2 distance 3 > hide #!4 models > hide #!4.1 models > hide #!4.2 models > hide #!4.3 models > hide #!2 models > hide #!1.1 models > show #1.1 models > volume splitbyzone #1 Opened cryosparc_P412_J3810_004_volume_map.mrc 0 as #5.1, grid size 360,360,360, pixel 0.73, shown at level 0.0737, step 1, values float32 Opened cryosparc_P412_J3810_004_volume_map.mrc 1 as #5.2, grid size 360,360,360, pixel 0.73, shown at level 0.0737, step 1, values float32 Opened cryosparc_P412_J3810_004_volume_map.mrc 2 as #5.3, grid size 360,360,360, pixel 0.73, shown at level 0.0737, step 1, values float32 Opened cryosparc_P412_J3810_004_volume_map.mrc 3 as #5.4, grid size 360,360,360, pixel 0.73, shown at level 0.0737, step 1, values float32 > close #4 > hide #!5 models > show #!5 models > hide #!5.1 models > hide #!5.2 models > hide #!5.3 models > hide #!5.4 models > show #!5.3 models > show #!5.2 models > hide #!5.2 models > show #!5.2 models > hide #!5.2 models > show #!5.4 models > hide #!5.4 models > show #!2 models > transparency 70 > color sel byhetero > show #!1 models > color sel byhetero > hide #!1 models > hide #1.1 models > select clear > color byhetero > show #!1 models > hide #!1 models > show #!5.4 models > delete element.H Missing or invalid ""atoms"" argument: invalid atoms specifier > delete element .H Missing or invalid ""atoms"" argument: invalid atoms specifier > delete .H Missing or invalid ""atoms"" argument: invalid atoms specifier > save /Users/L061961/Library/CloudStorage/OneDrive- > EliLillyandCompany/Documents/Projects/SLC15A4/Structures/SLC15A4+4576270/chimera/overall.cxs > volume #5.4 level 0.03121 > volume #5.4 level 0.05152 > volume #5.3 level 0.05031 > volume #5.3 level 0.05706 > open /Users/L061961/Library/CloudStorage/OneDrive- > EliLillyandCompany/Documents/Projects/SLC15A4/Structures/SLC15A4+4576270/noH_4576270.pdb Chain information for noH_4576270.pdb #4 --- Chain | Description A B | No description available Computing secondary structure > hide #!4 target m > close #4 > open /Users/L061961/Library/CloudStorage/OneDrive- > EliLillyandCompany/Documents/Projects/SLC15A4/Structures/SLC15A4+4576270/noH_4576270_2.pdb Chain information for noH_4576270_2.pdb #4 --- Chain | Description A B | No description available Computing secondary structure > hide #!5.3 models > show #!5.3 models > hide #!2 models > show #!2 models > hide #!5.3 models > show #!5.3 models > hide #!4 models > close #4 > select H 7702 atoms, 990 residues, 1 model selected > delete sel > hide #!5 models > show #!5 models > hide #!2 models > show #!2 models > select ::name=""LIG"" 66 atoms, 72 bonds, 2 residues, 1 model selected > log metadata #2 No models had metadata > log chains #2 Chain information for SLC15A4_4576270_fit_J3810.pdb #2 --- Chain | Description A B | No description available > view #2 clip false > view clip false > copy sel Unknown command: copy sel > copy select Unknown command: copy select > combine #2 close false > rename #4 4576270_ligand.pdb > hide #2.1 models > hide #!2 models > hide #!4 models > show #!4 models > select #4 7556 atoms, 7750 bonds, 4 pseudobonds, 990 residues, 2 models selected > cartoon hide (#!4 & sel) > hide (#!4 & sel) target a > select ::name=""LIG"" 132 atoms, 144 bonds, 4 residues, 2 models selected > show (#!4 & sel) target ab > select clear > save /Users/L061961/Library/CloudStorage/OneDrive- > EliLillyandCompany/Documents/Projects/SLC15A4/Structures/SLC15A4+4576270/chimera/ligand.cxs > select ::name=""LIG"" 132 atoms, 144 bonds, 4 residues, 2 models selected > ui tool show ""Color Actions"" > color sel goldenrod > color sel byhetero > color zone #1 near #4 distance 3 > color sel byhetero > color zone #5.3 near #4 distance 3.48 > color sel goldenrod > color zone #5.3 near #4 distance 3.48 > transparency 70 > color sel byhetero > select clear > save /Users/L061961/Library/CloudStorage/OneDrive- > EliLillyandCompany/Documents/Projects/SLC15A4/Structures/SLC15A4+4576270/chimera/4576270_front.png > width 1304 height 1114 supersample 3 transparentBackground true > turn y 90 > save /Users/L061961/Library/CloudStorage/OneDrive- > EliLillyandCompany/Documents/Projects/SLC15A4/Structures/SLC15A4+4576270/chimera/4576270_y90.png > width 1304 height 1114 supersample 3 transparentBackground true > turn y -90 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.10.1 (2025-07-24) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 90.5 OpenGL renderer: Apple M4 OpenGL vendor: Apple Python: 3.11.4 Locale: en_US.UTF-8 Qt version: PyQt6 6.8.1, Qt 6.8.2 Qt runtime version: 6.8.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: Mac16,12 Model Number: MW133LL/A Chip: Apple M4 Total Number of Cores: 10 (4 performance and 6 efficiency) Memory: 16 GB System Firmware Version: 13822.41.1 OS Loader Version: 13822.41.1 Software: System Software Overview: System Version: macOS 26.1 (25B78) Kernel Version: Darwin 25.1.0 Time since boot: 13 days, 5 hours, 52 minutes Graphics/Displays: Apple M4: Chipset Model: Apple M4 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 4 Displays: C34H89x: Resolution: 3440 x 1440 (UWQHD - Ultra-Wide Quad HD) UI Looks like: 3440 x 1440 @ 50.00Hz Main Display: Yes Mirror: Off Online: Yes Rotation: Supported LG SDQHD: Resolution: 2048 x 2304 UI Looks like: 2048 x 2304 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 babel: 2.17.0 beautifulsoup4: 4.13.3 blockdiag: 3.0.0 blosc2: 3.6.1 build: 1.2.2.post1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.2 ChimeraX-AddCharge: 1.5.19 ChimeraX-AddH: 2.2.7 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.20.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Aniso: 1.1.4 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60.7 ChimeraX-AtomicLibrary: 14.1.19 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.5.1 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.10.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.1 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.6.2 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.10.1 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.19 ChimeraX-ModelPanel: 1.5.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14.1 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.10 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.3 ChimeraX-ProfileGrids: 1.1.3 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.3 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.7 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.1 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.45.2 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.2 coverage: 7.10.0 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.12 debugpy: 1.8.15 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.0 filelock: 3.18.0 fonttools: 4.59.0 funcparserlib: 2.0.0a0 glfw: 2.9.0 grako: 3.16.5 h5py: 3.14.0 html2text: 2024.2.26 idna: 3.10 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.1.0 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.7 jedi: 0.19.1 Jinja2: 3.1.6 jupyter_client: 8.6.3 jupyter_core: 5.8.1 jupyterlab_widgets: 3.0.15 kiwisolver: 1.4.8 line_profiler: 4.2.0 lxml: 5.3.1 lz4: 4.3.2 MarkupSafe: 3.0.2 matplotlib: 3.10.1 matplotlib-inline: 0.1.7 msgpack: 1.1.0 ndindex: 1.10.0 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.11.0 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 24.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.4.0 pip: 25.0.1 pkginfo: 1.11.1 platformdirs: 4.3.8 pluggy: 1.6.0 prompt_toolkit: 3.0.51 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.5 pynrrd: 1.0.0 PyOpenGL: 3.1.9 PyOpenGL-accelerate: 3.1.9 pyopenxr: 1.1.4501 pyparsing: 3.2.3 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.8.1 PyQt6-Qt6: 6.8.2 PyQt6-WebEngine-commercial: 6.8.0 PyQt6-WebEngine-Qt6: 6.8.2 PyQt6_sip: 13.10.0 pytest: 8.4.1 pytest-cov: 6.2.1 python-dateutil: 2.9.0.post0 pytz: 2025.2 pyzmq: 27.0.0 qtconsole: 5.5.2 QtPy: 2.4.3 qtshim: 1.1 RandomWords: 0.4.0 requests: 2.32.3 roman-numerals-py: 3.1.0 scipy: 1.14.0 setuptools: 78.1.0 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.7 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.1.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.7.1 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.4 tornado: 6.5.1 traitlets: 5.14.3 typing_extensions: 4.14.1 tzdata: 2025.2 urllib3: 2.5.0 wcwidth: 0.2.13 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.14 }}} " defect closed normal Graphics duplicate all ChimeraX